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http://purl.bioontology.org/ontology/BT

A top-domain ontology that provides definitions for the foundational entities of biomedicine as a basic vocabulary to unambiguously describe facts in this domain. It can furthermore serve as top-level model for creating new ontologies for more specific domains or as aid for aligning or improving existing ones.

Proper citation: BioTop Ontology (RRID:SCR_010039) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ELIG

A set of 1,437 eligibility features that were organized into a feature hierarchy using 80 breast cancer trials.

Proper citation: Eligibility Feature Hierarchy (RRID:SCR_010314) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/EMO

Ontology to describe the active components of the enzyme''s reactions (cofactors, amino acid residues and cognate ligands) and their roles in the reaction. EMO builds upon this by formalizing key concepts, and the relationships between them, necessary to define enzymes and their functions. This describes not only the general features of an enzyme, including the EC number (catalytic activity), 3D structure and cellular locations, but also allows for the detailed annotation of the mechanism. This mechanistic detail can be either at a gross level (overall reaction only), or the more detailed granularity of the steps and components required to effect the overall chemical transformation.

Proper citation: Enzyme Mechanism Ontology (RRID:SCR_010315) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/PIERO

An enzyme ontology that deals with partial reactions (transformations)

Proper citation: Enzyme Reaction Ontology for partial chemical perspectives (RRID:SCR_010316) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/EPILONT

Ontology about the epilepsy domain and epileptic seizures. Based on the diagnosis proposed by the International League Against Epilepsy (ILAE).

Proper citation: Epilepsy Ontology (RRID:SCR_010317) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/LHN

An ontology for Loggerhead sea turtle (Caretta caretta) nesting behavior, based on the published ethogram of Hailman and Elowson. A demonstration of ontology construction as a general technique for coding ethograms and other descriptions of behavior into machine understandable forms.

Proper citation: Loggerhead Nesting Ontology (RRID:SCR_010318) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/BIOMODELS

OWL Representation of the models in the BioModels repository.

Proper citation: BioModels Ontology (RRID:SCR_010125) Copy   

•   Source: SciCrunch Registry

http://bioportal.bioontology.org/ontologies/ASDPTO

Ontology that encapsulates the Autism Spectrum Disorder behavioral phenotype, informed by the standard ASD assessment instruments and the currently known characteristics of this disorder.

Proper citation: Autism Spectrum Disorder Phenotype Ontology (RRID:SCR_010006) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ICPC

Ontology of the international classification of primary care (ICPC). Denmark: World Organisation of Family Doctors, 1993.

Proper citation: International Classification of Primary Care (RRID:SCR_010262) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ICD9CM

Ontology of the international standard diagnostic classification for all general epidemiological, many health management purposes and clinical use.

Proper citation: International Classification of Diseases Version 9 - Clinical Modification (RRID:SCR_010104) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/FBbi

A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.

Proper citation: Biological Imaging Methods Ontology (RRID:SCR_010235) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ICF

A classification of health and health-related domains. These domains are classified from body, individual and societal perspectives by means of two lists: a list of body functions and structure, and a list of domains of activity and participation. Since an individual''s functioning and disability occurs in a context, the ICF also includes a list of environmental factors.

Proper citation: International Classification of Functioning Disability and Health (RRID:SCR_010239) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/CANONT

Upper-level ontology for cancer.

Proper citation: Upper-Level Cancer Ontology (RRID:SCR_010443) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/GEXO

An application ontology for the domain of gene expression. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations.

Proper citation: Gene Expression Ontology (RRID:SCR_010326) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/WSIO

Ontology that enables automated interaction with more complex Web services that are typical for example within life sciences. WSIO is however independent of the application domain and relevant for both SOAP and REST Web services, and for batch execution engines in general. If the interaction scenario with a Web service is nontrivial (and incorporates session handling), annotation with WSIO concepts will enable automatic generation of client programs, scripts, or interactive applications with a graphical user interface. WSIO also enables automation of different ways of data transfer and data un-/compression or en-/decoding. They strongly discourage providers from developing complex interaction and data-transfer/compression scenarios, however when needed, WSIO may enable smooth automated interaction with them. Future versions will support more interaction scenarios. WSIO aims to serve also as a means to standardise the complex interaction scenarios primarily within both SOAP and REST Web services, and secondarily to apply also to batch execution infrastructure in general.

Proper citation: Web-Service Interaction Ontology (RRID:SCR_010448) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/GFO

A top-level ontology integrating objects and processes.

Proper citation: General Formal Ontology (RRID:SCR_010328) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/CO-WHEAT

Ontology that defines traits of the International Wheat Information System (IWIS) database and wheat descriptor.

Proper citation: Wheat Trait Ontology (RRID:SCR_010449) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/GFO-BIO

A biological core ontology built on the General Formal Ontology.

Proper citation: General Formal Ontology for Biology (RRID:SCR_010329) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/XEO

Ontology to help plant scientists in documenting and sharing metadata describing the abiotic environment.

Proper citation: XEML Environment Ontology (RRID:SCR_010450) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/GCO

Ontology to define the abstract division of the total genetic information of an organism by its physical separation into different components, thereby providing a high level reference point to which more specific descriptions of the characteristics of these components can be linked.

Proper citation: Genome Component Ontology (RRID:SCR_010330) Copy   

•   Source: SciCrunch Registry