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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Calcium ActiVity Explorer project Resource Report Resource Website |
Calcium ActiVity Explorer project (RRID:SCR_021419) | CAVE | portal, project portal, data or information resource | Project related to calcium imaging.Provide open source tool for combined analysis of head mounted calcium imaging and behavior. Used to analyze imaging data from head mounted microscopes simultaneously with behavioral data. | Head mounted calcium imaging, calcium imaging and behavior, calcium imaging, analyze imaging data, head mounted microscopes, behavioral data, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium ActiVity Explorer |
DOI:10.3389/fnins.2018.00958 | Free, Freely available | SCR_021419 | Calcium ActiVity Explorer | 2026-08-04 09:44:48 | 0 | |||||||
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ToxTrac project Resource Report Resource Website |
ToxTrac project (RRID:SCR_021424) | portal, project portal, data or information resource | Project related to high speed tracking of animals.Provides software tool for tracking organisms.Can handle one or several animals in one or several environments.Used for fish, insects, rodents, etc. | Tracking organisms, tracking fish, tracking insects, tracking rodents, behavior measurement, freely moving, OpenBehavior |
is listed by: OpenBehavior is related to: ToxTrac |
DOI:10.1111/2041-210x.12874 | Free, Freely available | SCR_021424 | ToxTrac | 2026-08-04 09:44:48 | 0 | ||||||||
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BrainGlobe project Resource Report Resource Website 1+ mentions |
BrainGlobe project (RRID:SCR_021481) | portal, project portal, data or information resource | Project is related to working with atlas data from multiple species on common platform.Provides collection of Python tools for working with atlas data from multiple species on common platform and for morphological analyses in systems neuroscience. | Atlas data from multiple species, atlas data on common platform, morphological analyses, systems neuroscience, OpenBehavior | is listed by: OpenBehavior | Free, Freely available | SCR_021481 | BrainGlobe | 2026-08-04 09:44:50 | 1 | |||||||||
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Toolboxes for Spike and LFP Analysis project Resource Report Resource Website |
Toolboxes for Spike and LFP Analysis project (RRID:SCR_021478) | portal, project portal, data or information resource | Portal includes compared several toolboxes for spike and LFP analysis, connectivity analysis, dimensionality reduction, and generalized linear modeling. Discussion about major features of software available for Python and MATLAB including Brainstorm, Chronux, Elephant, FieldTrip, gramm, Spike Viewer, and SPIKY. They include succinct tables for assessing system and program requirements, quality of documentation and support, and data types accepted by each toolbox. | List of compared toolboxes for spike and LFP analysis, connectivity analysis, dimensionality reduction, generalized linear modeling, assessing system and program requirements, quality of documentation and support, data types accepted, OpenBehavior | is listed by: OpenBehavior | DOI:10.3389/fninf.2019.00057 | Free, Freely available | SCR_021478 | Toolboxes for Spike and LFP Analysis | 2026-08-04 09:44:50 | 0 | ||||||||
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Scintillate project Resource Report Resource Website |
Scintillate project (RRID:SCR_021479) | portal, project portal, data or information resource | Project related to time series calcium imaging evaluation and pre-processing. Included open source graphical viewer for time series calcium imaging evaluation and pre-processing is provided by Swedish University scientists . | Image acquisition, time series calcium imaging evaluation, calcium imaging, |
is listed by: OpenBehavior is related to: Scintillate |
DOI:10.1016/j.jneumeth.2016.08.010 | Free, Freely available | SCR_021479 | Scintillate | 2026-08-04 09:44:49 | 0 | ||||||||
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Wave Surfer project Resource Report Resource Website |
Wave Surfer project (RRID:SCR_021476) | portal, project portal, data or information resource | Project related to neurophysiology data acquisition and analysis.Included open source software application for neurophysiology data acquisition and analysis is provided by Howard Hughes Medical Institute Janelia Research Campus scientists. Program is based in MatLab, and evolved from earlier open source software package called Ephus. | Neurophysiology data acquisition, neurophysiology data analysis, neurophysiology data, MATLAB, OpenBehavior |
is listed by: OpenBehavior is related to: Wave Surfer |
Free, Freely available | SCR_021476 | Wave Surfer | 2026-08-04 09:44:49 | 0 | |||||||||
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Automated Classification of Self-grooming in Mice project Resource Report Resource Website 1+ mentions |
Automated Classification of Self-grooming in Mice project (RRID:SCR_021597) | portal, project portal, data or information resource | Portal provides protocol that implements JAABA, open source machine learning based behavior detection system; motr, open-source mouse trajectory tracking software; and bonsai, open source system capable of streaming and recording video. Together they use these tools to process videos of mice performing grooming behaviors in variety of behavioral setups. | grooming behavior, behavior detection protocol, JAABA behavior detection system, motr mouse trajectory tracking software, bonsai streaming and recording video, OpenBehavior | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2017.05.026 | Free, Freely available | SCR_021597 | Automated Classification of Self-grooming in Mice | 2026-08-04 09:44:51 | 1 | ||||||||
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Calcium Imaging data Analysis project Resource Report Resource Website 1+ mentions |
Calcium Imaging data Analysis project (RRID:SCR_021477) | CaImAn | portal, project portal, data or information resource | Project related to calcium imaging.Provides software library, CaImAn, for one and two-photon Calcium Imaging data Analysis. | calcium imaging analysis, movie handling, motion correction, source extraction, spike deconvolution, result visualization, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium Imaging data Analysis |
DOI:10.7554/elife.38173 | Free, Freely available | SCR_021477 | Calcium Imaging data Analysis | 2026-08-04 09:44:49 | 1 | |||||||
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BonVision project Resource Report Resource Website |
BonVision project (RRID:SCR_021491) | portal, project portal, data or information resource | Project related to creating and controlling visual environments.Provided open source software package for creating and controlling visual environments was developed by University College London scientists. | Creating visual environments, controlling visual environments, Bonsai, 2D environment, 3D environments, OpenBehavior |
is listed by: OpenBehavior is related to: BonVision has parent organization: University College London; London; United Kingdom |
DOI:10.1101/2020.03.09.983775 | Free, Freely available | SCR_021491 | BonVision | 2026-08-04 09:44:50 | 0 | ||||||||
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Open Source Whisking Video Database portal Resource Report Resource Website |
Open Source Whisking Video Database portal (RRID:SCR_021404) | portal, project portal, data or information resource | Portal provides shared database of videos featuring juvenile and adult male rats and adult male mice exploring stationary objects.This dataset includes wide variety of experimental conditions including genetic, pharmacological, and sensory deprivation interventions to explore how active sensing behavior is modulated by different factors. Database of high speed videos of whisking behavior in freely moving rodents.Open source high speed infrared videography database to study principles of active sensing in freely navigating rodents. | High speed videos, whisking behavior, freely moving rodents, infrared videography database, active sensing, OpenBehavior |
is listed by: OpenBehavior is related to: Open Source Whisking Video Database |
DOI:10.1093/gigascience/giy134 | Free, Freely available | SCR_021404 | 2026-08-04 09:44:48 | 0 | |||||||||
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DeepFly3D Resource Report Resource Website |
DeepFly3D (RRID:SCR_021402) | data processing software, software application, software resource, image analysis software | Software tool as PyTorch and PyQT5 implementation of 2D-3D tethered Drosophila pose estimation. Image annotation tool used for pose estimation and appendage tracking. Provides interface for pose estimation and to permit further correction of 2D pose estimates, which are automatically converted to 3D pose. | Image annotation, pose tracking, pose estimation, motor circuit, behavioral measure, accurate 3D pose estimation, OpenBehavior |
is listed by: OpenBehavior is related to: DeepFly3D project |
DOI:10.7554/elife.48571 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/deepfly3d/ | SCR_021402 | 2026-08-04 09:44:48 | 0 | ||||||||
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MedParse Resource Report Resource Website |
MedParse (RRID:SCR_021528) | data processing software, software application, software resource | Software tool to read MedPC data into Python and Matlab. MedPC code for saving precise times of behavioral events and MatLab and Python functions to convert MedPC data into time event codes. | Read MedPC data, Python, Matlab, behavioral events, time event codes, OpenBehavior |
is listed by: OpenBehavior is related to: MedParse project |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/medparse/ | SCR_021528 | 2026-08-04 09:44:51 | 0 | |||||||||
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EZcalcium Resource Report Resource Website 1+ mentions |
EZcalcium (RRID:SCR_022354) | data processing software, software application, software resource, data analysis software | Software package for MATLAB that makes motion correction, segmentation, signal extraction and dimension reduction, analysis, and visualization of calcium imaging data easy to implement. Open source toolbox for analysis of calcium imaging data. | OpenBehavior, neural signal analysis, neural recording, optical imaging, analyze calcium imaging data |
is listed by: OpenBehavior has parent organization: David Geffen School of Medicine at UCLA; California; USA |
DOI:10.3389/fncir.2020.00025 | Free, Available for download, Freely available | https://github.com/porteralab/EZcalcium | SCR_022354 | 2026-08-04 09:45:00 | 1 | ||||||||
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GuPPy Resource Report Resource Website 10+ mentions |
GuPPy (RRID:SCR_022353) | data processing software, software application, software resource, data analysis software | Software Python toolbox that makes fiber photometry data analysis intuitive and light on programming.Used to measure neural activity of freely behaving animals. | OpenBehavior, photometry analysis, neural activity measure, freely behaving animals |
is listed by: OpenBehavior has parent organization: Northwestern University Feinberg School of Medicine; Illinois; USA |
DOI:10.1038/s41598-021-03626-9 | https://github.com/LernerLab/GuPPy | SCR_022353 | Guided Photometry Analysis in Python | 2026-08-04 09:45:00 | 15 | ||||||||
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Pain Assessment at Withdrawal Speeds Resource Report Resource Website |
Pain Assessment at Withdrawal Speeds (RRID:SCR_022350) | PAWS | data processing software, software application, software resource, data analysis software | Statistical software platform for automated scoring of pain in mice.Software R package takes paw trajectory data in response to stimulus and provides automated scoring of pain. | OpenBehavior, behavior measurement, freely moving mice, behavioral data analysis, scoring of reflexive paw withdrawal | is listed by: OpenBehavior | DOI:10.7554/eLife.57258 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/paws/ | SCR_022350 | 2026-08-04 09:44:59 | 0 | |||||||
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Mouse Action Recognition System Resource Report Resource Website 1+ mentions |
Mouse Action Recognition System (RRID:SCR_022347) | MARS | data processing software, software application, software resource, data analysis software | Software Python pipeline for automated detection, pose estimation, and behavior classification in socially interacting mice.Used for pose estimation and behavior quantification in pairs of freely behaving mice. | OpenBehavior, behavior measurement, video analysis, real time recording and analysis, pose estimation and behavior quantification, freely behaving mice |
is listed by: OpenBehavior is related to: MARS Developer has parent organization: Northwestern University; Illinois; USA |
DOI:10.7554/eLife.63720 | Free, Available for download, Freely available | https://github.com/neuroethology/MARS | SCR_022347 | 2026-08-04 09:44:59 | 7 | |||||||
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PavCA project Resource Report Resource Website |
PavCA project (RRID:SCR_022508) | PavCA | topical portal, portal, data or information resource | Project related to tracking behavior. Used to identify subgroups of individuals that differentially attribute incentive value to food cue. Includes apparatus for studying Pavlovian conditioned approach behavior. Customized rat PavCA chambers are constructed based on modular devices purchased from Med-Associates. Code used to operate equipment and collect data was written using Med-Associates’ MEDSTATE programming language. This program is then loaded into Med-PC V operating program, also created by Med-Associates. | Behavior, behavior analysis, Pavlovian conditioning, apparatus, Pavlovian conditioned approach, Instrument, OpenBehavior |
is listed by: OpenBehavior has parent organization: University at Buffalo; New York; USA |
Free, Freely available | SCR_022508 | Pavlovian Conditioned Approach, PavCA | 2026-08-04 09:45:02 | 0 | ||||||||
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SIPEC Resource Report Resource Website |
SIPEC (RRID:SCR_022364) | SIPEC | data processing software, software application, software resource, data analysis software | Software pipeline for video analysis. Deep learning Swiss knife for behavioral data analysis.Performs segmentation, identification, pose-estimation and classification of complex behaviour. Used for analysis of behavior of multiple animals in complex environments. | OpenBehavior, video analysis, behavioral data analysis |
is listed by: OpenBehavior has parent organization: ETH Zurich; Zurich; Switzerland |
DOI:10.1038/s42256-022-00477-5 | Free, Available for download, Freely available | https://github.com/SIPEC-Animal-Data-Analysis/SIPEC | SCR_022364 | SIPEC project | 2026-08-04 09:45:04 | 0 | ||||||
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Timed pressure control hardware and software for delivery of air mediated distensions in animal models Resource Report Resource Website 1+ mentions |
Timed pressure control hardware and software for delivery of air mediated distensions in animal models (RRID:SCR_022363) | instrument resource, portal, data or information resource, project portal | System uses Arduino microcontroller to control relay module that operates solenoid valve which all sit in 3D printed housing. Solenoid works in conjunction with flowmeter regulator to allow for controlled flow of pressurized air into target. Timing of distensions is controlled via either custom Python based UI, or by triggered TTL pulse.Timed pressure control hardware and software used for delivery of air mediated distensions in animal models. | OpenBehavior, Instrument, behavior apparatus, delivery of air mediated distensions, animal models | is listed by: OpenBehavior | DOI:10.1016/J.OHX.2022.E00271 | Free, Freely available | https://osf.io/rs5p4 | SCR_022363 | Timed pressure control hardware and software for delivery of air mediated distensions in animal models project | 2026-08-04 09:45:00 | 1 | |||||||
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OpenPose Resource Report Resource Website 1+ mentions |
OpenPose (RRID:SCR_022362) | data processing software, software application, software resource, data analysis software | Software tool as multi subject keypoint detection library for real time pose estimation.Used to track behavior of monkeys in natural environments, without disrupting their typical pattern of behavior. Deep learning software system for body, face, hands, and foot estimation in monkeys. | OpenBehavior, tracking limb orientation, behavior measurement, freely moving, realtime recording and analysis, video analysis | is listed by: OpenBehavior | DOI:10.1101/2021.01.28.428726 | Free, Available for download, Freely available | https://github.com/CMU-Perceptual-Computing-Lab/openpose | SCR_022362 | 2026-08-04 09:45:00 | 9 |
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