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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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CHECKHET Resource Report Resource Website |
CHECKHET (RRID:SCR_009147) | CHECKHET | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application to detect genetically abnormal subjects in a case-control sample based on genotypes at multiple marker loci. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, unix | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154267 | SCR_009147 | 2026-08-04 09:42:19 | 0 | ||||||||
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CEPH2CRI Resource Report Resource Website |
CEPH2CRI (RRID:SCR_009143) | CEPH2CRI | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application to convert output from CEPH DBMS to CRIMAP format. | gene, genetic, genomic, pascal, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154262 | SCR_009143 | 2026-08-04 09:42:18 | 0 | ||||||||
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CC-QLS Resource Report Resource Website 1+ mentions |
CC-QLS (RRID:SCR_009140) | CC-QLS | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, unix | is listed by: Genetic Analysis Software | nlx_154259 | SCR_009140 | Case-Control Quasi-Likelihood Score test | 2026-08-04 09:42:18 | 1 | ||||||||
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CCRAVAT Resource Report Resource Website |
CCRAVAT (RRID:SCR_009141) | CCRAVAT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2026. Software application for enabling the analysis of rare variants in large-scale case control and quantitative trait association studies. CCRaVAT (Case-Control Rare Variant Analysis Tool) and QuTie (Quantitative Trait) are software packages that enable efficient large-scale analysis of rare variants across specific regions or genome-wide. These programs implement a rare variant super-locus or collapsing method that investigates the accumulation of rare variant alleles in either a case-control or quantitative trait study design. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154260 | SCR_009141 | Case-Control RAre Variant Analysis Tool QUTIE | 2026-08-04 09:42:19 | 0 | |||||||
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GWAPOWER Resource Report Resource Website 1+ mentions |
GWAPOWER (RRID:SCR_009216) | software application, software resource | A R package for assessing the power of genome-wide association studies using commercially available genotyping chips. The package encapsulates extensive simulation results generated by our program HAPGEN. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154369, nlx_154586, SCR_000847 | SCR_009216 | R/GWAPOWER, Genome-Wide Association POWER | 2026-08-04 09:42:19 | 8 | |||||||||
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GSMA Resource Report Resource Website 1+ mentions |
GSMA (RRID:SCR_009214) | GSMA | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 7,2025. Software application that is a rank-based meta-analysis method for analyzing results from genome-wide linkage searches. A software package is now available. The gsma software calculates the summed rank for any number of studies and bins, then obtains p-values for the Summed Rank and the Ordered Rank statistics, by simulation. Weighted and unweighted analyses are performed. A test data set is included. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, solaris, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154367 | http://mmg.umds.ac.uk/GSMA | SCR_009214 | Genome Search Meta Analysis | 2026-08-04 09:42:20 | 4 | ||||||
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FINETTI Resource Report Resource Website 100+ mentions |
FINETTI (RRID:SCR_009179) | FINETTI | software application, software resource | Software application that tests for deviation from Hardy-Weinberg equilibrium and tests for association in case controls studies; Plot genotype frequencies graphically using a de Finetti diagram. (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, (web implementation: perl, c, php), web-based, ms-dos, ms-windows, (32), linux, (for stand-alone version) | is listed by: Genetic Analysis Software | nlx_154316 | SCR_009179 | de FINETTI generator | 2026-08-04 09:42:19 | 283 | ||||||||
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FBAT Resource Report Resource Website 50+ mentions |
FBAT (RRID:SCR_009178) | FBAT | software application, software resource | Software application that allows the user to test for association/linkage between disease phenotypes and haplotypes by utilizing family-based controls. The method extends the approach for testing described in Rabinowitz and Laird (2000) to handle multiple tightly linked markers. It is robust to population admixture, yet efficient in the sense that it utilizes data from families where phase cannot be completely resolved in all individuals by using weights, which are estimated from the sample. However, the method remains robust to population stratification and population admixture. The method can handle any type of phenotype, including multiple phenotypes and missing parents, marker data, and/or phase, and provides both bi-allelic and multi-allelic tests. PowerFBAT is a tool for power simulation of association analysis using FBAT with binary outcomes. XWXW is an extension to the Haseman-Elston method for non-parametric linkage test with quantitative traits. XDT is a software that performs classical TDT, SDT and Rabinowitz TDT for nuclear families (not supported anymore). (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, solaris, linux, ms-windows, mac, macos x, darwin | is listed by: Genetic Analysis Software | nlx_154315 | SCR_009178 | (haplotype) Family Based Association Test PBAT | 2026-08-04 09:42:18 | 77 | ||||||||
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GLUE Resource Report Resource Website 10+ mentions |
GLUE (RRID:SCR_009211) | GLUE | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. A web interface to several commonly used statistical genetics programs, including Linkage, Genehunter, Merlin, Unphased, and Transmit. It simplifies their use through graphical selection of program options, automation of multiple analyses, and viewing of graphical output. GLUE is available to HGMP account holders; registration is free to all academic users., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, perl, any web browser, bio.tools |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: bio.tools |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154360, biotools:GLUE | https://bio.tools/GLUE | http://portal.litbio.org/Registered/Webapp/glue/ | SCR_009211 | Genetic Linkage User Environment | 2026-08-04 09:42:20 | 46 | |||||
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Turkish Human Mutation Database Resource Report Resource Website |
Turkish Human Mutation Database (RRID:SCR_008246) | database, data or information resource | The Molecular Biology and Genetics Department at Bogazii University is one of the major reference laboratories in Turkey, specialized in molecular analysis of common genetic disorders. Over the years, the rapid accumulation of mutation data in connection with detailed clinical and laboratory information, has led to the idea of establishing a national database for storing, analysing and presenting it in a more efficient and systematic way. For this purpose, an interdisciplinary project was initiated in 1995. b-Thalassemia and Hemophilia-B Databases were selected as preliminary models, for they offer alternative design and implementation strategies due to different clinical and genetic characteristics. b-Thalassemia is an autosomal recessive disorder, characterized by microcytosis and hemolytic anemia, which is the result of reduced b-Globin chain synthesis. In Turkey, the disease is represented with a gene frequency of 2 and reflected by a wide spectrum of clinical manifestations with the presence of more than 40 different mutation. Currently, there is no database available for thalassemia mutations. Hemophilia B is an X-linked recessive disorder caused by heterogenous mutations, resulting in a marked deficit of coagulation factor IX (FIX); an essential component of the clotting mechanism. A hemophilia B database was first published in 1990 as a list of point mutations and short additions and deletions with 115 mutations comprising 216 entries Gene-, System-, or Disease- Specific Databases | gene-, genetic, anemia, autosomal, b-globin, biology, b-thalassemia, clinical, clotting, coagulation, disorder, hemolytic, hemophilia-b, heterogenous, laboratory, mechanism, microcytosis, model, molecular, mutation, or disease- specific databases, synthesis, system- | nif-0000-21404 | http://www.medinfo.hacettepe.edu.tr/hmuttr/ | SCR_008246 | Human Mutation Database | 2026-08-04 09:42:04 | 0 | |||||||||
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Brain and Body Genetic Resource Exchange Resource Report Resource Website 1+ mentions |
Brain and Body Genetic Resource Exchange (RRID:SCR_008959) | BB-GRE | database, data or information resource | A database and associated tools for investigating the genetic basis of neurodisability. It combines phenotype information from patients with neurodevelopmental and behavioral problems with clinical genetic data, and displays this information on the human genome map. Basic access to genetic information (deletions, duplications) relating to participants with neurodevelopmental disorders is provided without an account; access to the full dataset requires an account. The genetic information that is available to view comprises potentially pathogenic copy number variation across the genome, detected by array comparative genome hybridization (aCGH) using a customized 44K oligonucleotide array. | developmental disorder, copy number, neurodevelopmental disorder, child, phenotype, genotype-phenotype, brain, genetic, gene, genotype, behavior, clinical, genome, neurodevelopment, behavioral disorder, genetic variant, development | has parent organization: King's College London; London; United Kingdom | Schizophrenia, Mental retardation, Attention deficit hyperactivity disorder, Developmental language delay, Dyslexia, Sleep disorder, Epilepsy, Dysmorphism, Neurodisability, Autism | Acknowledgement required | nlx_151987 | http://bbgre-dev.iop.kcl.ac.uk/info/about-us | SCR_008959 | BBGRE.org, Brain & Body Genetic Resource Exchange, BB-GRE database | 2026-08-04 09:42:16 | 1 | |||||
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coloc Resource Report Resource Website 50+ mentions |
coloc (RRID:SCR_026041) | software resource, software toolkit, source code | Software package to perform genetic colocalisation analysis of two potentially related phenotypes, to ask whether they share common genetic causal variant(s) in a given region.Colocalisation Tests of Two Genetic Traits. | Colocalisation tests, two genetic traits, genetic colocalisation analysis, genetic, colocalisation, two potentially related phenotypes, share common genetic causal variant, | Free, Available for download, Freely available, | https://CRAN.R-project.org/package=coloc | SCR_026041 | , coloc v5.2.3 | 2026-08-04 09:45:54 | 57 | |||||||||
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Columbia University Zuckerman Institute Molecular Tools Core Facility Resource Report Resource Website 1+ mentions |
Columbia University Zuckerman Institute Molecular Tools Core Facility (RRID:SCR_026201) | access service resource, core facility, service resource | Full service viral vector production core that provides investigators access to vector technology for preclinical studies and other basic research applications. Staff will provide expert consultation services for advanced study design, safe use of viral vector technologies and viral construction services for multiple viral vector types. | Virology, antibodies, genetic, access tool, viral vector production, viral construction services, multiple viral vector types, | Open | SCR_026201 | The Zuckerman Institute Molecular Tools Core, , Antibodies and Genetic Access Tools, Zuckerman Institute: Molecular Tools - Virology | 2026-08-04 09:45:56 | 1 | ||||||||||
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Cell Model Passports Resource Report Resource Website 1+ mentions |
Cell Model Passports (RRID:SCR_027682) | database, data or information resource, catalog | Hub for clinical, genetic and functional datasets of preclinical cancer models.Provides details of cell model relationships, patient and clinical information, as well as access to associated genetic and functional datasets. Passports database contains curated details and standardized annotation for cell models, including cancer organoid cultures. Users can navigate database via tissue, cancer-type, genetic feature and data availability to select model. REST-API provides programmatic data access and exploration. | clinical, genetic, functional, datasets, preclinical cancer models, | has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom | Wellcome Trust ; Wellcome Sanger Institute |
PMID:30260411 | Free, Freely available | SCR_027682 | 2026-08-04 09:46:16 | 2 | ||||||||
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PacGenomics Resource Report Resource Website |
PacGenomics (RRID:SCR_027700) | commercial organization, service resource | Company provides medical laboratory services, specializing in genetic and genomic testing. | genetic, genomic, testing services, | SCR_027700 | 2026-08-04 09:46:16 | 0 |
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