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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Peter MacCallum Cancer Centre Advanced Histology and Microscopy Core Facility Resource Report Resource Website 1+ mentions |
Peter MacCallum Cancer Centre Advanced Histology and Microscopy Core Facility (RRID:SCR_025432) | CAHM | service resource, access service resource, core facility | Provides tools and expertise in bio image analysis, histology, and microscopy. Facility allows for the preparation, visualization, and quantification of biological samples at the cellular and sub cellular levels. Researchers can choose to utilize our instruments independently or collaborate with our skilled staff through our fee-for-service options. | bio image analysis, histology, microscopy, histology, | is listed by: ABRF CoreMarketplace | ABRF_2819 | https://coremarketplace.org/?FacilityID=2819&citation=1 | SCR_025432 | , Centre for Advanced Histology and Microscopy, Peter MacCallum Cancer Centre Advanced Histology and Microscopy | 2026-08-14 09:29:01 | 5 | |||||||
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University of Edinburgh Genomics Core Facility Resource Report Resource Website 1+ mentions |
University of Edinburgh Genomics Core Facility (RRID:SCR_025433) | service resource, access service resource, core facility | Core provides secure receipt, processing, archiving and analysis of biological samples. Offers support for clinical research from sample collection to genetic analysis, working to the principles of Good Clinical Practice for Laboratories. Facility provides access to genomic technologies and services including next-generation sequencing (Illumina), third-generation sequencing (PacBio and Oxford Nanopore), bespoke bioinformatics analysis, and genomics and bioinformatics training. | Genomics, Sequencing, Microarrays, Digital PCR, DNA & RNA extractions; Illumina, Element, PacBio, ONT |
is listed by: ABRF CoreMarketplace has parent organization: University of Edinburgh; Scotland; United Kingdom |
Open | ABRF_5723 | https://coremarketplace.org/?FacilityID=5723&citation=1 | SCR_025433 | Edinburgh Genomics Core Facility | 2026-08-14 09:29:37 | 3 | |||||||
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Puncta Analyzer Resource Report Resource Website 1+ mentions |
Puncta Analyzer (RRID:SCR_025425) | image analysis software, data processing software, software application, software resource, source code | Software tool for detecting and quantifying punctate co-localization in multi-channel images. | detecting, quantifying, punctate co-localization, multi-channel images, | is a plug in for: ImageJ | Free, Available for download, Freely available | SCR_025425 | Puncta Analyzer v2 | 2026-08-14 09:29:01 | 1 | |||||||||
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C3Poa Resource Report Resource Website 1+ mentions |
C3Poa (RRID:SCR_025484) | C3Poa | data processing software, software application, data analysis software, software resource, source code | Software to detect DNA splint sequence raw reads. Computational pipeline for calling consensi on R2C2 nanopore data. | Concatemeric Consensus Caller, Partial Order alignments, detect DNA splint sequence raw reads, calling consensi on R2C2 nanopore data, | NHGRI 1T32HG008345 | PMID:30201725 | Free, Available for download, Freely available, | SCR_025484 | Concatemeric Consensus Caller with Partial Order alignments. | 2026-08-14 09:29:38 | 5 | |||||||
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The Great Genoytper Resource Report Resource Website 1+ mentions |
The Great Genoytper (RRID:SCR_025487) | data processing software, software application, software resource | Software workflow begins by preprocessing short-read samples of raw data to create counting colored De Bruijn graph. Graph based method for population genotyping of small and structural variants. Population genotyping workflow. | Population genotyping, genotyping of small and structural variants, preprocessing short-read samples, raw data, create counting colored De Bruijn graph, | DOI:10.1101/2024.07.04.24309921 | Free, Available for download, Freely available, | SCR_025487 | 2026-08-14 09:29:02 | 1 | ||||||||||
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University of Colorado School of Medicine Electron Microscopy Core Facility Resource Report Resource Website 1+ mentions |
University of Colorado School of Medicine Electron Microscopy Core Facility (RRID:SCR_025521) | service resource, access service resource, core facility | Service facility which provides instrumentation and image analysis on recharge basis. Offers full specimen preparation and imaging services. Specimen preparation for electron microscopy studies including negative staining, plastic embedding, ultramicrotome and immunogold. | Specimen preparation, electron microscopy, instrumentation, image analysis, imaging services, negative staining, plastic embedding, ultramicrotome, immunogold |
is listed by: ABRF CoreMarketplace has parent organization: University of Colorado School of Medicine; Colorado; USA |
Open | ABRF_2830 | https://coremarketplace.org/?FacilityID=2830&citation=1 | SCR_025521 | , Electron Microscopy Core Facility, University of Colorado Anschutz Medical Campus Electron Microscopy Core Facility | 2026-08-14 09:29:02 | 1 | |||||||
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Skera Resource Report Resource Website 1+ mentions |
Skera (RRID:SCR_025482) | data processing software, software application, data analysis software, software resource, source code | Software Pacbio analysis tool. Deconcat PacBio reads. | Deconcat PacBio reads, PacBio, PacBio reads, Pacbio analysis, | Free, Available for download, Freely available, | https://github.com/PacificBiosciences/skera?tab=readme-ov-file | SCR_025482 | 2026-08-14 09:29:01 | 4 | ||||||||||
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SCOM Resource Report Resource Website 1+ mentions Rating or validation data |
SCOM (RRID:SCR_023738) | software application, simulation software, software resource | Software application to Pan-cancer characterization of ncRNA synergistic competition. Used to predict ncRNA synergistic competition network from gene expression data and predicted ncRNA-related ceRNA networks. | Pan-cancer characterization, ncRNA synergistic competition, predict ncRNA synergistic competition network, gene expression data, ncRNA-related ceRNA networks, | Free, Available for download, Freely available | SCR_023738 | Synergistic COMpetition | 2026-08-14 09:28:41 | 1 | ||||||||||
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MatrixEQTL Resource Report Resource Website 50+ mentions |
MatrixEQTL (RRID:SCR_025513) | data processing software, software application, data analysis software, software resource | Software tool for ultra fast eQTL analysis via large matrix operations. | expression Quantitative Trait Loci, fast eQTL analysis, large matrix operations, | NIMH R01 MH090936; NIEHS R01 ES015241; US Environmental Protection Agency ; NCI R01 CA138255; NSF ; Gillings Innovation Laboratory in Statistical Genomics |
PMID:22492648 | Free, Freely available, | SCR_025513 | Matrix Expression Quantitative Trait Loci | 2026-08-14 09:29:15 | 75 | ||||||||
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Cellsnp-lite Resource Report Resource Website 1+ mentions |
Cellsnp-lite (RRID:SCR_025515) | software application, software resource, source code | Software C/C++ tool for efficient genotyping bi-allelic SNPs on single cells. You can use cellsnp-lite after read alignment to obtain the snp x cell pileup UMI or read count matrices for each alleles of given or detected SNPs. | C, C++, genotyping bi-allelic SNPs on single cells, after read alignment, | University of Hong Kong | PMID:33963851 | Free, Available for download, Freely available, | SCR_025515 | 2026-08-14 09:29:38 | 4 | |||||||||
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Cytek SpectroFlo Resource Report Resource Website 50+ mentions |
Cytek SpectroFlo (RRID:SCR_025494) | data processing software, software application, software resource, data acquisition software | Flow Cytometry acquisition software. | Cytek, flow cytometry, data acquision, | works with: CyTekBio: Aurora Spectral Analyzer | Restricted | SCR_025494 | SpectroFlo | 2026-08-14 09:29:38 | 60 | |||||||||
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MetaboSERV Resource Report Resource Website 1+ mentions |
MetaboSERV (RRID:SCR_025496) | storage service resource, service resource, data repository, computational service resource | Browser based platform for selecting, exchanging, and visualizing metabolomics data with controlled data access. Used to facilitate collaborative metabolomics research and to enable researchers to make their experimental data findable, accessible, interoperable, and re-usable as defined by the FAIR principles. | FAIR, FAIR data, metabolomics data, controlled data access, | German Federal Ministry of Education and Research (BMBF) 01ZX1912A; German Federal Ministry of Education and Research (BMBF) 01ZX1912C; German Federal Ministry of Education and Research (BMBF) 01ZX1912D |
Restricted | https://gitlab.gwdg.de/metaboserv2 (source code); https://metaboserv.ckdn.app (centralized instance) | SCR_025496 | 2026-08-14 09:29:15 | 1 | |||||||||
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EventIDE Resource Report Resource Website 1+ mentions |
EventIDE (RRID:SCR_025412) | software application, software resource | Software for designing and running advanced behavioral experiments and neuroscientific studies. | Okazo lab, neuroscience, neuroscietific studies, visibility test, designing experiments, running experiments, behavioral experiments, | Restricted | SCR_025412 | 2026-08-14 09:29:36 | 1 | |||||||||||
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Indiana University School of Medicine Medical Genomics Core Facility Resource Report Resource Website 1+ mentions |
Indiana University School of Medicine Medical Genomics Core Facility (RRID:SCR_025533) | service resource, access service resource, core facility | Provides high-throughput genomics services including: genomic DNA sequencing, transcriptome RNA sequencing, miRNA sequencing, methylome or targeted methylation sequencing, protein DNA/RNA interaction (ChIP-seq, ATAC-seq and CLIP-seq), 10x single cell or single nuclei sequencing, and SNP genotyping. | ABRF, genomics services, genomic DNA sequencing, transcriptome RNA sequencing, miRNA sequencing, methylome or targeted methylation sequencing, protein DNA/RNA interaction, |
is listed by: ABRF CoreMarketplace has parent organization: Indiana University School of Medicine; Indiana; USA |
ABRF_2840 | https://indianactsi.org/servicecores/core/10/, https://coremarketplace.org/?FacilityID=2840&citation=1 | SCR_025533 | Indiana University School of Medicine Center for Medical Genomics | 2026-08-14 09:29:03 | 1 | ||||||||
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Seattle Children's Research Institute Genomics and Spatial Biology Collaborative Laboratory Core Facility Resource Report Resource Website 1+ mentions |
Seattle Children's Research Institute Genomics and Spatial Biology Collaborative Laboratory Core Facility (RRID:SCR_025490) | service resource, access service resource, core facility | Provides technology and service capabilities in long and short read sequencing, spatial transcriptomics, and single cell assays. | long and short read sequencing, spatial transcriptomics, single cell assays, | SCR_025490 | , Genomics and Spatial Biology Collaborative Laboratory (CoLab), Seattle Children's Research Institute Genomics and Spatial Biology Collaborative Laboratory | 2026-08-14 09:29:02 | 1 | |||||||||||
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pre-rob Resource Report Resource Website 1+ mentions |
pre-rob (RRID:SCR_025493) | software application, software resource, source code | Neural networks for RoB assessment in preclinical publications. BERT-model based automated tool that assesses bias of preclinical research studies. | ASWG, RoB tool, neural networks for RoB assessment in preclinical publications, | PMID:34709718 | Free, Available for download, Freely available, | SCR_025493 | 2026-08-14 09:29:02 | 1 | ||||||||||
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Indiana University School of Medicine Biospecimen Collection and Banking Core Facility Resource Report Resource Website 1+ mentions |
Indiana University School of Medicine Biospecimen Collection and Banking Core Facility (RRID:SCR_025529) | service resource, access service resource, core facility | Core offers services related to biospecimen and data collection in support of cancer research. Provides collection of well-annotated samples from patients with malignancy and normal controls to support studies exploring the biologic basis of cancer, move basic findings to clinic, and probe the biology underlying clinical and population phenomena. | ABRF, biospecimen collection, data collection, cancer research, |
is listed by: ABRF CoreMarketplace has parent organization: Indiana University School of Medicine; Indiana; USA |
ABRF_2850 | https://indianactsi.org/servicecores/core/44/, https://coremarketplace.org/?FacilityID=2850&citation=1 | SCR_025529 | , Biospecimen Collection and Banking Core (BC2), Indiana University School of Medicine Biospecimen Collection and Banking Core | 2026-08-14 09:29:15 | 1 | ||||||||
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BEADL:BEhavioral tAsk Description Language Resource Report Resource Website 1+ mentions |
BEADL:BEhavioral tAsk Description Language (RRID:SCR_025464) | BEADL | standard specification, data or information resource, narrative resource | Universal framework for describing behavioral tasks. Language to abstract and standardize behavioral task descriptions on two layers. Graphical layer specifies elements to describe behavioral tasks as state machine in formal flow diagram and how task controlling system interacts with subject. This graphical layer has been designed to be easy to understand while retaining all aspects of behavioral task. The second layer is corresponding, XML-based description of task. This layer forms rigid, yet extensible foundation of BEADL and hides hardware implementation related details form graphical representation.BEADL-specific extension for Neurodata Without Borders data standard defines how behavioral outcomes of task are stored in NWB including corresponding BEADL task description. | Language to abstract and standardize behavioral task descriptions, two layers, graphical layer specifies elements, describe behavioral tasks as state machine, formal flow diagram, behavioral task | is related to: Neurodata Without Borders | NIMH RF1MH120034; NeuroNex NSF |
Free, Freely available, | SCR_025464 | BEhavioral tAsk Description Language | 2026-08-14 09:29:14 | 1 | |||||||
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NWB Inspector Resource Report Resource Website 1+ mentions |
NWB Inspector (RRID:SCR_025465) | software application, software resource | Software Python-based package designed to asses quality of Neurodata Without Borders files and based on compliance with Best Practice. Meant as companion to PyNWB validator, which checks for strict schema compliance. Attempts to apply some commonsense rules and heuristics to find data components of file that pass validation, but are probably incorrect, or suboptimal, or deviate from best practices. In other words, while PyNWB validator focuses on compliance of structure of file with the schema, the inspector focuses on compliance of actual data with best practices. Meant as data review aid. It does not catch all best practice violations, and any warnings it does produce should be checked by knowledgeable reviewer. | data review aid, asses quality of Neurodata Without Borders files, compliance with Best Practice, companion to PyNWB validator, compliance of actual data with best practices, |
is related to: Neurodata Without Borders is related to: PyNWB |
Free, Freely available | SCR_025465 | 2026-08-14 09:29:01 | 1 | ||||||||||
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University of Virginia School of Medicine Genetically Engineered Murine Model Core Facility Resource Report Resource Website 1+ mentions |
University of Virginia School of Medicine Genetically Engineered Murine Model Core Facility (RRID:SCR_025473) | GEMM | service resource, access service resource, core facility | Core provides services to produce and preserve genetically engineered mouse strains for animal model research.Supports animal model research endeavors, to advance genetic and reproductive technologies for model creation and preservation, and to serve as resource for design, development and derivation of customized mouse strains. | customized mouse strains, produce and preserve genetically engineered mouse strains, genetically engineered mouse strains, mouse strains, |
is listed by: ABRF CoreMarketplace has parent organization: University of Virginia School of Medicine; Virginia; USA |
Open | ABRF_2826 | https://coremarketplace.org/?FacilityID=2826&citation=1 | SCR_025473 | , UVA School of Medicine Genetically Engineered Murine Model (GEMM) Core, UVA School of Medicine Genetically Engineered Murine Model Core | 2026-08-14 09:29:01 | 4 |
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