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https://cran.r-project.org/web/packages/glmmTMB/index.html

Software R package for fitting generalized linear mixed models and extensions, built on Template Model Builder.

Proper citation: glmmTMB (RRID:SCR_025512) Copy   

•   Source: SciCrunch Registry

https://med.virginia.edu/research-histology-core/

Core provides standard and customized research specific histology services including routine formalin fixation and paraffin embedding, and sectioning, automated Hematoxylin and Eosin staining as well as selection of manually prepared special stains and preparation of frozen section.

Proper citation: University of Virginia School of Medicine Research Histology Core Facility (RRID:SCR_025470) Copy   

•   Source: SciCrunch Registry

https://med.virginia.edu/biomolecular-magnetic-resonance-facility/

Facility has NMR spectrometers used to execute experiments typically used for structure elucidation and dynamics characterization of both small and large (ie. protein) molecules in solution. All spectrometers are connected to the internet. Data can be readily transferred for remote processing and the campus has a site license for Mestrenova NMR data processing and visualization software. Assistance is available for all who wish to use NMR spectroscopy. Advice on all aspects of solution NMR spectroscopy is available from the facility manager.

Proper citation: University of Virginia School of Medicine Biomolecular Magnetic Resonance Core Facility (RRID:SCR_025469) Copy   

•   Source: SciCrunch Registry

https://www.vetmed.auburn.edu/research/flow-cytometry-laboratory/

Flow Cytometry Laboratory at Auburn University College of Veterinary Medicine provides operator-managed and assisted support for flow cytometry analyses and high-speed cell sorting.

Proper citation: Auburn University Flow Cytometry and High-Speed Cell Sorting Laboratory Core Facility (RRID:SCR_025507) Copy   

•   Source: SciCrunch Registry

https://www.usa.philips.com/healthcare/product/HC1082462/sleepware-g3-sleep-diagnostic-software

Software platform and database to manage studies from our in-lab PSG, Alice 6, and portable sleep testing devices, Alice NightOne and Alice PDx.

Proper citation: Sleepware G3 (RRID:SCR_025509) Copy   

•   Source: SciCrunch Registry

https://www.uab.edu/cores/ircp/cryo-em

Core supports the application of cryo-EM in making new scientific discoveries. Provides access and training in the use of cutting edge cryo-EM technology and techniques for the characterization of biological samples from the cellular to the atomic scale.

Proper citation: University of Alabama at Birmingham Cryo-Electron Microscopy Core Facility (RRID:SCR_025450) Copy   

•   Source: SciCrunch Registry

https://gco.iarc.fr/en

Interactive web-based platform presenting global cancer statistics to inform cancer control and cancer research. Focuses on the visualization of cancer indicators using data from IARC’s Cancer Surveillance Branch (CSU), including GLOBOCAN;Cancer Incidence in Five Continents (CI5); International Incidence of Childhood Cancer (IICC); and several cancer survival benchmarking projects (SurvCan and SURVMARK).

Proper citation: Global Cancer Observatory (RRID:SCR_025451) Copy   

•   Source: SciCrunch Registry

https://github.com/PhysiMeSS/PhysiMeSS

PhysiCell add-on which allows users to simulate ECM components as agents. PhysiCell addon for extracellular matrix modelling.

Proper citation: PhysiMeSS (RRID:SCR_025455) Copy   

•   Source: SciCrunch Registry

https://spsp.ch/

Secure One-health online platform that enables near real-time sharing under controlled access of pathogen sequencing data and their associated clinical/epidemiological metadata. Data exchange platform for bacterial, viral and fungal genomics and associated metadata.

Proper citation: Swiss Pathogen Surveillance Platform (RRID:SCR_025456) Copy   

•   Source: SciCrunch Registry

https://www.data.casearth.cn/

Portal built for the release and sharing of data resources of "Big Earth Data Science Engineering Program (CASEarth)" launched by the Chinese Academy of Sciences. A global raster data of land cover and land use. This data can be used for mapping and spatial modeling in Geographic Information Systems (GIS) or other computer programs. This website is not accessible from the USA.

Proper citation: Chinese CASEarth Data Sharing and Service Portal (RRID:SCR_025660) Copy   

•   Source: SciCrunch Registry

https://discover.nci.nih.gov/

Provides pharmacogenomics resource for study of cancer. Multiple tools are available, currently including the CellMiner family with CellMiner, CellMinerCDB (cross data-base), CellMinerCDB: Small Cell Lung Cancer (SCLC), CellMinerCDB: National Center for Advancing Translational Sciences (NCATS) andCellMinerCDB: Sarcoma. These sites include multiple cancerous cell lines sets and data types. In addition there is CIMMiner for cluster image maps and MIMminer, with several scholarly molecular interaction maps.

Proper citation: National Cancer Institute Genomics and Pharmacology Core Facility (RRID:SCR_025664) Copy   

•   Source: SciCrunch Registry

https://polymerscreen.yale.edu

Open access web app that allows users to search for optimal condition for extraction of membrane proteins into membrane active polymers which allows for retention of native membrane environment around target protein.

Proper citation: MAP Database Guide for Membrane Protein Solubilization (RRID:SCR_025656) Copy   

•   Source: SciCrunch Registry

http://www.geodata.cn/

A raster layer of global vegetation types, in Chinese. Please note the website is not functional from the US.

Proper citation: Chinese National Earth System Science Data Center (RRID:SCR_025658) Copy   

•   Source: SciCrunch Registry

https://www.gscloud.cn/

Web app for global DEM data with spatial resolution of about 30m. This data can be used for mapping and spatial modelling in GIS or other computer programs.

Proper citation: Chinese Geospatial Data Cloud (RRID:SCR_025659) Copy   

•   Source: SciCrunch Registry

https://www.boris.unito.it/

Multiplatform standalone program that allows user-specific coding environment to be set for computer-based review of previously recorded videos or live observations. Allows project-based ethogram to be defined that can then be shared with collaborators, or can be imported or modified. Event logging software for video/audio coding and live observations. BORIS is a free and open-source software available for GNU/Linux, Windows and MacOS.

Proper citation: Behavioral Observation Research Interactive Software (RRID:SCR_025700) Copy   

•   Source: SciCrunch Registry

https://github.com/JenHungWang/ECTI_Atopic_Dermatitis/blob/master/README.md

Software repository presents objective, quantifiable method for assessing severity of atopic dermatitis.

Proper citation: ECTI_Atopic_Dermatitis (RRID:SCR_025706) Copy   

•   Source: SciCrunch Registry

https://portal.brain-map.org/genetic-tools/genetic-tools-atlas

Searchable catalog of enhancer-adeno-associated viruses (AAVs) that have been developed and tested at the Allen Institute for Brain Science. We present a suite of enhancer AAVs that can provide access to specific cell types when delivered to the whole brain. Multiple epigenomic and transcriptomic datasets were interrogated to reveal candidate enhancers that are selectively accessible in particular cell populations. Enhancer AAVs were constructed and screened for desirable expression and a sizeable subset of enhancer AAVs were subjected to further characterization by single cell transcriptomics and/or brain-wide expression imaging in mouse. In the GTA, we present a large toolkit for selective gene expression in cell types of interest. Genetic Tools Atlas is part of the growing Brain Knowledge Platform.

Proper citation: Genetic Tools Atlas (RRID:SCR_025643) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=ssMutPA

Software R tool designed for single-sample mutation-based pathway analysis by integrating somatic mutation data with protein-protein interaction (PPI) networks.

Proper citation: Single-sample Mutation-based Pathway Analysis (RRID:SCR_025644) Copy   

•   Source: SciCrunch Registry

https://www.morphosource.org/

Publicly accessible 3D data repository where subject experts, educators, and general public can find, view, interact with, and download 3D and 2D media representing physical objects important to the world’s natural history, cultural heritage, and scientific collections. Media data are contributed by a community that includes museums, institutions, researchers, scholars, and other subject experts who use MorphoSource to archive data, share findings, and increase scholarly impact. Contributed media represent both biological objects such as fossils and representatives of living species, as well as artifacts and objects created by humans that are critical to our shared cultural heritage.

Proper citation: MorphoSource (RRID:SCR_025654) Copy   

•   Source: SciCrunch Registry

https://discover.nci.nih.gov/cellminer/

Database and query tool designed for cancer research community to facilitate integration and study of molecular and pharmacological data for the NCI-60 cancerous cell lines. The NCI-60, panel of 60 diverse human cancer cell lines used by the Developmental Therapeutics Program of the U.S. National Cancer Institute to screen over 100,000 chemical compounds and natural products since 1990.

Proper citation: CellMiner (RRID:SCR_025648) Copy   

•   Source: SciCrunch Registry