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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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glmmTMB Resource Report Resource Website 10+ mentions |
glmmTMB (RRID:SCR_025512) | software toolkit, source code, software resource | Software R package for fitting generalized linear mixed models and extensions, built on Template Model Builder. | Template Model Builder, fitting generalized linear mixed models and extensions, generalized linear mixed models, | Free, Available for download, Freely available, | https://github.com/glmmTMB/glmmTMB, https://journal.r-project.org/archive/2017/RJ-2017-066/index.html | SCR_025512 | generalized linear mixed models using Template Model Builder | 2026-08-14 09:29:38 | 19 | |||||||||
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University of Virginia School of Medicine Research Histology Core Facility Resource Report Resource Website 10+ mentions |
University of Virginia School of Medicine Research Histology Core Facility (RRID:SCR_025470) | service resource, access service resource, core facility | Core provides standard and customized research specific histology services including routine formalin fixation and paraffin embedding, and sectioning, automated Hematoxylin and Eosin staining as well as selection of manually prepared special stains and preparation of frozen section. | frozen section preparation, histology services, formalin fixation, paraffin embedding, sectioning, Hematoxylin and Eosin staining, |
is listed by: ABRF CoreMarketplace has parent organization: University of Virginia School of Medicine; Virginia; USA |
ABRF_2823 | https://coremarketplace.org/?FacilityID=2823&citation=1 | SCR_025470 | , Research Histology Core, UVA School of Medicine Research Histology Core | 2026-08-14 09:29:01 | 16 | ||||||||
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University of Virginia School of Medicine Biomolecular Magnetic Resonance Core Facility Resource Report Resource Website 1+ mentions |
University of Virginia School of Medicine Biomolecular Magnetic Resonance Core Facility (RRID:SCR_025469) | service resource, access service resource, core facility | Facility has NMR spectrometers used to execute experiments typically used for structure elucidation and dynamics characterization of both small and large (ie. protein) molecules in solution. All spectrometers are connected to the internet. Data can be readily transferred for remote processing and the campus has a site license for Mestrenova NMR data processing and visualization software. Assistance is available for all who wish to use NMR spectroscopy. Advice on all aspects of solution NMR spectroscopy is available from the facility manager. | Biomolecular magnetic resonance, magnetic resonance, |
is listed by: ABRF CoreMarketplace has parent organization: University of Virginia School of Medicine; Virginia; USA |
Restricted | ABRF_2822 | https://coremarketplace.org/?FacilityID=2822&citation=1 | SCR_025469 | , Biomolecular Magnetic Resonance Facility, UVA School of Medicine Biomolecular Magnetic Resonance Facility | 2026-08-14 09:29:14 | 2 | |||||||
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Auburn University Flow Cytometry and High-Speed Cell Sorting Laboratory Core Facility Resource Report Resource Website 1+ mentions |
Auburn University Flow Cytometry and High-Speed Cell Sorting Laboratory Core Facility (RRID:SCR_025507) | service resource, access service resource, core facility | Flow Cytometry Laboratory at Auburn University College of Veterinary Medicine provides operator-managed and assisted support for flow cytometry analyses and high-speed cell sorting. | cell sorting, flow cytometry, flow cytometry analysis, |
is listed by: ABRF CoreMarketplace has parent organization: Auburn University; Alabama; USA |
ABRF_2864 | https://coremarketplace.org/?FacilityID=2864&citation=1 | SCR_025507 | Auburn University Flow Cytometry and High-Speed Cell Sorting Laboratory | 2026-08-14 09:29:38 | 1 | ||||||||
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Sleepware G3 Resource Report Resource Website 1+ mentions |
Sleepware G3 (RRID:SCR_025509) | database, data processing software, software application, data or information resource, software resource | Software platform and database to manage studies from our in-lab PSG, Alice 6, and portable sleep testing devices, Alice NightOne and Alice PDx. | manage sleep studies data, portable sleep device data, sleep data collection, | works with: Philips: Alice 6 LDx Diagnostic sleep system | sleep apnea | Restricted | https://images.philips.com/is/content/PhilipsConsumer/Campaigns/HC20140401_DG/Documents/how-to-adicionar-una-base-station-al-g3-alice-6.pdf | SCR_025509 | 2026-08-14 09:29:15 | 1 | ||||||||
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University of Alabama at Birmingham Cryo-Electron Microscopy Core Facility Resource Report Resource Website 1+ mentions |
University of Alabama at Birmingham Cryo-Electron Microscopy Core Facility (RRID:SCR_025450) | CEMF | service resource, access service resource, core facility | Core supports the application of cryo-EM in making new scientific discoveries. Provides access and training in the use of cutting edge cryo-EM technology and techniques for the characterization of biological samples from the cellular to the atomic scale. | Cryo-Electron Microscopy, cryo-EM, characterization of biological samples, cellular scale, atomic scale, |
is listed by: ABRF CoreMarketplace has parent organization: University of Alabama at Birmingham; Alabama; USA |
ABRF_2821 | https://coremarketplace.org/?FacilityID=2821&citation=1 | SCR_025450 | , UAB Cryo-EM Facility, Cryo-Electron Microscopy Facility (CEMF), University of Alabama at Birmingham Cryo-Electron Microscopy Facility | 2026-08-14 09:29:14 | 9 | |||||||
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Global Cancer Observatory Resource Report Resource Website 10+ mentions |
Global Cancer Observatory (RRID:SCR_025451) | GCO | data or information resource, portal, organization portal | Interactive web-based platform presenting global cancer statistics to inform cancer control and cancer research. Focuses on the visualization of cancer indicators using data from IARC’s Cancer Surveillance Branch (CSU), including GLOBOCAN;Cancer Incidence in Five Continents (CI5); International Incidence of Childhood Cancer (IICC); and several cancer survival benchmarking projects (SurvCan and SURVMARK). | World Health Organization, global cancer data, global cancer statistics, cancer data, | SCR_025451 | 2026-08-14 09:29:01 | 24 | |||||||||||
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PhysiMeSS Resource Report Resource Website 1+ mentions |
PhysiMeSS (RRID:SCR_025455) | source code, software application, simulation software, software resource | PhysiCell add-on which allows users to simulate ECM components as agents. PhysiCell addon for extracellular matrix modelling. | Agent-based simulation, extracellular matrix, fibers, extracellular matrix modelling, simulate ECM components, | DOI:10.1101/2023.10.27.564365 | Free, Available for download, Freely available, | SCR_025455 | PhysiCell Microenvironment Structure Simulation | 2026-08-14 09:29:37 | 1 | |||||||||
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Swiss Pathogen Surveillance Platform Resource Report Resource Website 1+ mentions |
Swiss Pathogen Surveillance Platform (RRID:SCR_025456) | SPSP | organism-related portal, topical portal, data or information resource, portal | Secure One-health online platform that enables near real-time sharing under controlled access of pathogen sequencing data and their associated clinical/epidemiological metadata. Data exchange platform for bacterial, viral and fungal genomics and associated metadata. | Data exchange platform, pathogen, pathogen data hub, surveillance, pathogen sequencing data, pathogen sequencing data sharing, clinical metadata, epidemiological metadata, | Swiss National Science Foundation ; Bangerter Rhyner Foundation ; ELIXIR CONVERGE ; University of Zurich |
PMID:37171846 | Restricted | SCR_025456 | Swiss Pathogen Data Platform | 2026-08-14 09:29:14 | 2 | |||||||
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Chinese CASEarth Data Sharing and Service Portal Resource Report Resource Website 1+ mentions |
Chinese CASEarth Data Sharing and Service Portal (RRID:SCR_025660) | storage service resource, service resource, data repository | Portal built for the release and sharing of data resources of "Big Earth Data Science Engineering Program (CASEarth)" launched by the Chinese Academy of Sciences. A global raster data of land cover and land use. This data can be used for mapping and spatial modeling in Geographic Information Systems (GIS) or other computer programs. This website is not accessible from the USA. | Geoscience, topology, data sharing | Restricted. Please note, this website is not accessible from the US. | SCR_025660 | 2026-08-14 09:29:17 | 2 | |||||||||||
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National Cancer Institute Genomics and Pharmacology Core Facility Resource Report Resource Website 10+ mentions |
National Cancer Institute Genomics and Pharmacology Core Facility (RRID:SCR_025664) | service resource, access service resource, core facility | Provides pharmacogenomics resource for study of cancer. Multiple tools are available, currently including the CellMiner family with CellMiner, CellMinerCDB (cross data-base), CellMinerCDB: Small Cell Lung Cancer (SCLC), CellMinerCDB: National Center for Advancing Translational Sciences (NCATS) andCellMinerCDB: Sarcoma. These sites include multiple cancerous cell lines sets and data types. In addition there is CIMMiner for cluster image maps and MIMminer, with several scholarly molecular interaction maps. | pharmacogenomics, study of cancer, cancerous cell lines sets and data types, cluster image maps, molecular interaction maps, |
uses: CellMiner uses: CellMinerCDB is listed by: ABRF CoreMarketplace has parent organization: National Cancer Institute |
PMID:8994024 | ABRF_2908 | https://coremarketplace.org/?FacilityID=2908&citation=1 | SCR_025664 | Genomics and Pharmacology Facility | 2026-08-14 09:29:05 | 42 | |||||||
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MAP Database Guide for Membrane Protein Solubilization Resource Report Resource Website 1+ mentions |
MAP Database Guide for Membrane Protein Solubilization (RRID:SCR_025656) | database, data or information resource | Open access web app that allows users to search for optimal condition for extraction of membrane proteins into membrane active polymers which allows for retention of native membrane environment around target protein. | optimal condition for extraction of membrane proteins, membrane active polymers, retention of native membrane environment, target protein, | has parent organization: Yale University; Connecticut; USA | NIGMS RM1GM149406; NIGMS R01GM141192; NIGMS R35GM147095; Michael J. Fox Foundation |
PMID:38405833 | Free, Freely available | SCR_025656 | Membrane Active Polymers Database Guide for Membrane Protein Solubilization | 2026-08-14 09:29:42 | 1 | |||||||
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Chinese National Earth System Science Data Center Resource Report Resource Website 100+ mentions |
Chinese National Earth System Science Data Center (RRID:SCR_025658) | database, data or information resource | A raster layer of global vegetation types, in Chinese. Please note the website is not functional from the US. | This website does not appear to be functional from the US. | SCR_025658 | 2026-08-14 09:29:05 | 246 | ||||||||||||
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Chinese Geospatial Data Cloud Resource Report Resource Website 100+ mentions |
Chinese Geospatial Data Cloud (RRID:SCR_025659) | database, data or information resource | Web app for global DEM data with spatial resolution of about 30m. This data can be used for mapping and spatial modelling in GIS or other computer programs. | geoscience, topology, global DEM data, spatial resolution, data for mapping and spatial modelling, | Free, Freely available | SCR_025659 | 2026-08-14 09:29:42 | 440 | |||||||||||
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Behavioral Observation Research Interactive Software Resource Report Resource Website 10+ mentions |
Behavioral Observation Research Interactive Software (RRID:SCR_025700) | BORIS | source code, software application, standalone software, software resource | Multiplatform standalone program that allows user-specific coding environment to be set for computer-based review of previously recorded videos or live observations. Allows project-based ethogram to be defined that can then be shared with collaborators, or can be imported or modified. Event logging software for video/audio coding and live observations. BORIS is a free and open-source software available for GNU/Linux, Windows and MacOS. | Event logging software, recorded videos, live observations, video coding, audio coding, behavioural sciences, | DOI:10.1111/2041-210X.12584 | Free, Available for download, Freely available | https://github.com/olivierfriard/BORIS | SCR_025700 | 2026-08-14 09:29:18 | 38 | ||||||||
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ECTI_Atopic_Dermatitis Resource Report Resource Website 1+ mentions |
ECTI_Atopic_Dermatitis (RRID:SCR_025706) | data processing software, software application, software resource, data visualization software, 3d visualization software | Software repository presents objective, quantifiable method for assessing severity of atopic dermatitis. | atopic dermatitis, corneocyte surface topography, deep learning, object detection, kernel density estimation, | Free, Available for download, Freely available | SCR_025706 | Effective Corneocyte Topographical Index_Atopic_Dermatitis | 2026-08-14 09:29:43 | 1 | ||||||||||
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Genetic Tools Atlas Resource Report Resource Website 1+ mentions |
Genetic Tools Atlas (RRID:SCR_025643) | GTA | database, data or information resource, catalog, atlas | Searchable catalog of enhancer-adeno-associated viruses (AAVs) that have been developed and tested at the Allen Institute for Brain Science. We present a suite of enhancer AAVs that can provide access to specific cell types when delivered to the whole brain. Multiple epigenomic and transcriptomic datasets were interrogated to reveal candidate enhancers that are selectively accessible in particular cell populations. Enhancer AAVs were constructed and screened for desirable expression and a sizeable subset of enhancer AAVs were subjected to further characterization by single cell transcriptomics and/or brain-wide expression imaging in mouse. In the GTA, we present a large toolkit for selective gene expression in cell types of interest. Genetic Tools Atlas is part of the growing Brain Knowledge Platform. | enhancer-adeno-associated viruses, enhancer AAVs, mouse transgenes, epifluorescence imaging, serial two-photon tomography, sc/snRNA-seq, genetic tools, |
is related to: Neuroglancer is related to: Addgene has parent organization: Allen Institute |
Paul G. Allen Foundation n/a; NIMH 1UF1 MH128339; NIMH 1UG3 MH120095; NIMH 1RF1 MH114126; NIMH 1RF1 MH121274 |
Free, Freely available | https://knowledge.brain-map.org/data/7CVKSF7QGAKIQ8LM5LC/summary, https://knowledge.brain-map.org/data/7CVKSF7QGAKIQ8LM5LC/specimens | SCR_025643 | Allen Genetic Tools Atlas | 2026-08-14 09:29:42 | 9 | ||||||
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Single-sample Mutation-based Pathway Analysis Resource Report Resource Website 1+ mentions |
Single-sample Mutation-based Pathway Analysis (RRID:SCR_025644) | ssMutPA | software application, data analytics software, software resource | Software R tool designed for single-sample mutation-based pathway analysis by integrating somatic mutation data with protein-protein interaction (PPI) networks. | ggplot2, ggridges, grDevices, igraph, kernlab, maftools, Matrix, NbClust, parallel, pheatmap, RColorBrewer, stats, survival, utils, knitr, qpdf, rmarkdown | Free, Available for download, Freely available, | SCR_025644 | Single-sample Mutation-based Pathway Analysis (ssMutPA) | 2026-08-14 09:29:17 | 1 | |||||||||
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MorphoSource Resource Report Resource Website 100+ mentions |
MorphoSource (RRID:SCR_025654) | database, data or information resource | Publicly accessible 3D data repository where subject experts, educators, and general public can find, view, interact with, and download 3D and 2D media representing physical objects important to the world’s natural history, cultural heritage, and scientific collections. Media data are contributed by a community that includes museums, institutions, researchers, scholars, and other subject experts who use MorphoSource to archive data, share findings, and increase scholarly impact. Contributed media represent both biological objects such as fossils and representatives of living species, as well as artifacts and objects created by humans that are critical to our shared cultural heritage. | 3D media, 2D media, physical objects, natural history, cultural heritage, scientific collections, shared cultural heritage, | NSF ; Duke University |
Free, Freely available, | r3d100012224 | https://github.com/MorphoSource, https://doi.org/10.17616/R35Q0K | SCR_025654 | 2026-08-14 09:29:17 | 104 | ||||||||
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CellMiner Resource Report Resource Website 100+ mentions |
CellMiner (RRID:SCR_025648) | database, data or information resource | Database and query tool designed for cancer research community to facilitate integration and study of molecular and pharmacological data for the NCI-60 cancerous cell lines. The NCI-60, panel of 60 diverse human cancer cell lines used by the Developmental Therapeutics Program of the U.S. National Cancer Institute to screen over 100,000 chemical compounds and natural products since 1990. | cancer research, integration and study of molecular and pharmacological data, NCI-60 cancerous cell lines, |
is used by: National Cancer Institute Genomics and Pharmacology Core Facility has parent organization: National Cancer Institute |
PMID:17339364 | Free, Freely available | SCR_025648 | Cell Miner, CellMiner | 2026-08-14 09:29:05 | 208 |
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