Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://github.com/MeichunCai/KataegisPortal
Software R package to detect and visualize Kataegis events from single nucleotide variants.
Proper citation: KataegisPortal (RRID:SCR_025621) Copy
LAR provides housing, food, water, bedding, enrichment and medical care for animals housed in LAR animal facilities to be used for research.
Proper citation: Indiana University Bloomington Laboratory Animal Resources Core Facility (RRID:SCR_025589) Copy
https://www.petermac.org/research/research-technologies/genotyping-core
Provides mouse genotyping service, from extraction of genomic DNA from tissue to reporting of genotypes. Offers Mycoplasma testing of any cell line and authentication of human cell lines.
Proper citation: Peter MacCallum Cancer Centre Genotyping Core Facility (RRID:SCR_025622) Copy
https://cran.r-project.org/web/packages/ggbiplot/readme/README.html
Software R package to provide ggplot2 implementation of biplot, simultaneous plot of scores for observations and vectors for variables for principal component-like analyses.
Proper citation: ggbiplot (RRID:SCR_025581) Copy
https://snp.icgrc.info/cannseek
Database of Cannabis sativa Single Nucleotide Polymorphisms discovered from NGS sequences and BioSamples available in NCBI. Sequence reads were called against cs10, Purple kush, and Finola reference assemblies using GATK and Parabricks pipelines.
Proper citation: CannSeek Database of Cannabis sativa SNPs (RRID:SCR_025579) Copy
https://academic.oup.com/biostatistics/article/23/4/1200/6561796
Software for multi-omic data integration. Used to jointly decompose multiple biologically related experimental data sets with biological and technological relationships that can be structured into the decomposition.
Proper citation: 2s-LCA (RRID:SCR_025613) Copy
https://academic.oup.com/bioinformatics/article/35/12/2159/5184284
Algorithm for regulatory network inference using gradient boosting, based on GENIE3 architecture. Used for inference of gene regulatory networks.
Proper citation: GRNBoost2 (RRID:SCR_025614) Copy
https://CRAN.R-project.org/package=MatchIt
Software R package to select matched samples of original treated and control groups with similar covariate distributions. Can be used to match exactly on covariates, to match on propensity scores, or perform variety of other matching procedures. Nonparametric preprocessing for parametric causal inference.
Proper citation: MatchIt (RRID:SCR_025618) Copy
Software R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. Used for comprehensively interpreting multi-omics data.
Proper citation: IOBR (RRID:SCR_025619) Copy
Cloud-based high performance computing for specialised analyses on environmental omics.
Proper citation: Cloud-SPAN (RRID:SCR_025594) Copy
https://ag.purdue.edu/department/arge/facilities-and-research/microscopy/index.html
Electron microscopy core with both service and individual use options.
Proper citation: Purdue University Life Science Microscopy Core Facility (RRID:SCR_025595) Copy
https://github.com/MarioniLab/miloR
Software R package implementation of Milo for testing for differential abundance in k-nearest neighbor graphs. Milo can identify perturbations that are obscured by discretizing cells into clusters. Used for differential abundance analysis on KNN graph from single-cell datasets.
Proper citation: miloR (RRID:SCR_025630) Copy
https://mednet.iu.edu/LARC/SitePages/Home.aspx
Core provides basic husbandry, training, supplies, and specialized service support for medical research at IU School of Medicine.
Proper citation: Indiana University School of Medicine Laboratory Animal Resource Center Core Facility (RRID:SCR_025590) Copy
https://appyters.maayanlab.cloud/#/hTFtarget_Harmonizome_ETL
Comprehensive database for regulations of Human Transcription Factors and their targets. Provides tools for visualization, interpretation, and analysis of pathway knowledge.
Proper citation: hTFtarget (RRID:SCR_025626) Copy
https://sipi.usc.edu/database/
Collection of digitized images.Maintained primarily to support research in image processing, image analysis, and machine vision.
Proper citation: USC-SIPI Image Database (RRID:SCR_025683) Copy
Openly licensed platform to work with RNA-RNA and protein-RNA interactions with software and pipelines to deeply mining thousands of high-throughput sequencing data of RNA-RNA interactome, CLIP-seq and degradome sequencing.
Proper citation: Encyclopedia of RNA Interactomes (RRID:SCR_025686) Copy
https://github.com/ratan-lab/sumo
Software for multiomic nonnegative matrix factorization.
Proper citation: Ratan-lab (SUMO) (RRID:SCR_025687) Copy
https://github.com/kircherlab/cfDNA-UniFlow
Workflow for preprocessing cfDNA samples. Unified, standardized, and ready-to-use workflow for processing whole genome sequencing cfDNA samples from liquid biopsies. Includes steps for pre-processing raw cfDNA samples, quality control and reporting. Additionally, several optional utility functions like GC bias correction and estimation of copy number state are included. Provides specialized methods for extracting coverage derived signals and visualizations comparing cases and controls.
Proper citation: cfDNA UniFlow (RRID:SCR_025600) Copy
Collection of literature and in-house MSn spectra data for research on plant metabolomics.
Proper citation: ReSpect for Phytochemicals (RRID:SCR_025688) Copy
https://cncm.som.uci.edu/viral-core/
Viral production facility aims at development and production of viral vectors for in-vivo and in-vitro experimentation purposes. Equipment coupled with our expertise allows use to ensure high quality products. Provides all related sequence data, vector maps, plasmids and ready-to-use viruses once your orders are completed.
Proper citation: University of California Irvine Center for Neural Circuit Mapping Viral Core Facility (RRID:SCR_025573) Copy
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
You can save any searches you perform for quick access to later from here.
We recognized your search term and included synonyms and inferred terms along side your term to help get the data you are looking for.
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the sources that were queried against in your search that you can investigate further.
Here are the categories present within RRID that you can filter your data on
Here are the subcategories present within this category that you can filter your data on
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
