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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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KataegisPortal Resource Report Resource Website 1+ mentions |
KataegisPortal (RRID:SCR_025621) | software toolkit, source code, software resource | Software R package to detect and visualize Kataegis events from single nucleotide variants. | Kataegis events, detect and visualize Kataegis events, single nucleotide variants, | Free, Available for download, Freely available | SCR_025621 | 2026-08-14 09:29:05 | 2 | |||||||||||
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Indiana University Bloomington Laboratory Animal Resources Core Facility Resource Report Resource Website 1+ mentions |
Indiana University Bloomington Laboratory Animal Resources Core Facility (RRID:SCR_025589) | LAR | service resource, access service resource, core facility | LAR provides housing, food, water, bedding, enrichment and medical care for animals housed in LAR animal facilities to be used for research. | ABRF, housing, food, water, bedding, enrichment, medical care, laboratory animals, |
is listed by: ABRF CoreMarketplace has parent organization: Indiana University Bloomington; Indiana; USA |
Restricted | ABRF_2892 | https://indianactsi.org/servicecores/core/89/, https://coremarketplace.org/?FacilityID=2892&citation=1 | SCR_025589 | Indiana University Bloomington Laboratory Animal Resources, , Laboratory Animal Resources (LAR) | 2026-08-14 09:29:04 | 1 | ||||||
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Peter MacCallum Cancer Centre Genotyping Core Facility Resource Report Resource Website 1+ mentions |
Peter MacCallum Cancer Centre Genotyping Core Facility (RRID:SCR_025622) | service resource, access service resource, core facility | Provides mouse genotyping service, from extraction of genomic DNA from tissue to reporting of genotypes. Offers Mycoplasma testing of any cell line and authentication of human cell lines. | Mycoplasma testing, mouse genotyping service, extraction of genomic DNA, reporting of genotypes, |
is listed by: ABRF CoreMarketplace has parent organization: Peter MacCallum Cancer Institute |
Open | ABRF_2903 | https://coremarketplace.org/?FacilityID=2903&citation=1 | SCR_025622 | 2026-08-14 09:29:41 | 4 | ||||||||
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ggbiplot Resource Report Resource Website 10+ mentions |
ggbiplot (RRID:SCR_025581) | software toolkit, source code, software resource | Software R package to provide ggplot2 implementation of biplot, simultaneous plot of scores for observations and vectors for variables for principal component-like analyses. | ggplot2 implementation of biplot, vectors for variables, variables for principal component-like analyses, simultaneous plot of scores, scores for observations, | is related to: ggplot2 | Free, Available for download, Freely available | https://github.com/vqv/ggbiplot | SCR_025581 | 2026-08-14 09:29:16 | 11 | |||||||||
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CannSeek Database of Cannabis sativa SNPs Resource Report Resource Website 1+ mentions |
CannSeek Database of Cannabis sativa SNPs (RRID:SCR_025579) | database, data or information resource | Database of Cannabis sativa Single Nucleotide Polymorphisms discovered from NGS sequences and BioSamples available in NCBI. Sequence reads were called against cs10, Purple kush, and Finola reference assemblies using GATK and Parabricks pipelines. | Cannabis sativa Single Nucleotide Polymorphisms data, NGS sequences, BioSamples, NCBI, sequence reads, | is related to: NCBI BioSample | Free, Freely available | SCR_025579 | 2026-08-14 09:29:40 | 2 | ||||||||||
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2s-LCA Resource Report Resource Website 1+ mentions |
2s-LCA (RRID:SCR_025613) | software application, software resource | Software for multi-omic data integration. Used to jointly decompose multiple biologically related experimental data sets with biological and technological relationships that can be structured into the decomposition. | multi-omic data integration, two-stage linked component analysis, jointly decompose biologically related experimental data sets, decomposition, | PMID:35358296 | https://github.com/CHuanSite/SJD | SCR_025613 | two-stage Linked Component Analysis | 2026-08-14 09:29:04 | 1 | |||||||||
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GRNBoost2 Resource Report Resource Website 10+ mentions |
GRNBoost2 (RRID:SCR_025614) | software application, software resource | Algorithm for regulatory network inference using gradient boosting, based on GENIE3 architecture. Used for inference of gene regulatory networks. | GRN, Gene Regulatory Network, inference of gene regulatory networks, | PMID:30445495 | Free, Freely available | https://arboreto.readthedocs.io/en/latest/, https://github.com/aertslab/GRNBoost | SCR_025614 | GRNBoost, Gene Regulatory Network Boost | 2026-08-14 09:29:41 | 11 | ||||||||
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MatchIt Resource Report Resource Website 500+ mentions |
MatchIt (RRID:SCR_025618) | software toolkit, source code, software resource | Software R package to select matched samples of original treated and control groups with similar covariate distributions. Can be used to match exactly on covariates, to match on propensity scores, or perform variety of other matching procedures. Nonparametric preprocessing for parametric causal inference. | Nonparametric preprocessing, parametric causal inference, match on propensity scores, match exactly on covariates, | Free, Available for download, Freely available, | https://github.com/kosukeimai/MatchIt | SCR_025618 | 2026-08-14 09:29:41 | 580 | ||||||||||
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IOBR Resource Report Resource Website 10+ mentions |
IOBR (RRID:SCR_025619) | data processing software, software application, data analysis software, software resource | Software R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. Used for comprehensively interpreting multi-omics data. | interpreting multi-omics data, perform comprehensive analysis, | National Natural Science Foundation of China ; Guangzhou Planned Project of Science and Technology |
PMID:34276676 | Free, Available for download, Freely available, | SCR_025619 | Immuno-Oncology Biological Research | 2026-08-14 09:29:17 | 44 | ||||||||
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Cloud-SPAN Resource Report Resource Website 1+ mentions |
Cloud-SPAN (RRID:SCR_025594) | software application, software resource | Cloud-based high performance computing for specialised analyses on environmental omics. | specialised analyses, environmental omics, | Free, Freely available, | SCR_025594 | Cloud SPecialised ANalyses | 2026-08-14 09:29:40 | 1 | ||||||||||
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Purdue University Life Science Microscopy Core Facility Resource Report Resource Website 1+ mentions |
Purdue University Life Science Microscopy Core Facility (RRID:SCR_025595) | LSMF | service resource, access service resource, core facility | Electron microscopy core with both service and individual use options. | ABRF, electron microscopy, | has parent organization: Purdue University; West Lafayette; Indiana | ABRF_2895 | https://indianactsi.org/servicecores/core/36/, https://coremarketplace.org/?FacilityID=2895&citation=1 | SCR_025595 | , Purdue University Life Science Microscopy Facility, Life Science Microscopy Facility (LSMF) | 2026-08-14 09:29:16 | 1 | |||||||
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miloR Resource Report Resource Website 10+ mentions |
miloR (RRID:SCR_025630) | software toolkit, source code, software resource | Software R package implementation of Milo for testing for differential abundance in k-nearest neighbor graphs. Milo can identify perturbations that are obscured by discretizing cells into clusters. Used for differential abundance analysis on KNN graph from single-cell datasets. | testing for differential abundance, k-nearest neighbor graphs, identify perturbations, differential abundance analysis, KNN graph, single-cell datasets, | PMID:34594043 | Free, Available for download, Freely available, | https://bioconductor.org/packages/miloR/, https://github.com/MarioniLab/milo_analysis_2020 | SCR_025630 | 2026-08-14 09:29:17 | 28 | |||||||||
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Indiana University School of Medicine Laboratory Animal Resource Center Core Facility Resource Report Resource Website 50+ mentions |
Indiana University School of Medicine Laboratory Animal Resource Center Core Facility (RRID:SCR_025590) | LARC | service resource, access service resource, core facility | Core provides basic husbandry, training, supplies, and specialized service support for medical research at IU School of Medicine. | ABRF, husbandry, training, supplies, animal service support, |
is listed by: ABRF CoreMarketplace has parent organization: Indiana University School of Medicine; Indiana; USA |
Restricted | ABRF_2893 | https://indianactsi.org/servicecores/core/98/, https://coremarketplace.org/?FacilityID=2893&citation=1 | SCR_025590 | Indiana University School of Medicine Laboratory Animal Resource Center (LARC) | 2026-08-14 09:29:40 | 60 | ||||||
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hTFtarget Resource Report Resource Website 50+ mentions |
hTFtarget (RRID:SCR_025626) | database, software resource, data or information resource, source code | Comprehensive database for regulations of Human Transcription Factors and their targets. Provides tools for visualization, interpretation, and analysis of pathway knowledge. | Human transcription factor database, human transcription factor, pathway knowledge, | National Natural Science Foundation of China ; National Key R&D Program of China ; China Postdoctoral Science Foundation |
PMID:32858223 | Free, Freely available | http://bioinfo.life.hust.edu.cn/hTFtarget | SCR_025626 | 2026-08-14 09:29:41 | 93 | ||||||||
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USC-SIPI Image Database Resource Report Resource Website 10+ mentions |
USC-SIPI Image Database (RRID:SCR_025683) | database, data or information resource | Collection of digitized images.Maintained primarily to support research in image processing, image analysis, and machine vision. | digitized images, | has parent organization: University of Southern California; Los Angeles; USA | Free, Freely available | SCR_025683 | 2026-08-14 09:29:43 | 21 | ||||||||||
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Encyclopedia of RNA Interactomes Resource Report Resource Website 100+ mentions |
Encyclopedia of RNA Interactomes (RRID:SCR_025686) | database, data or information resource | Openly licensed platform to work with RNA-RNA and protein-RNA interactions with software and pipelines to deeply mining thousands of high-throughput sequencing data of RNA-RNA interactome, CLIP-seq and degradome sequencing. | platform to work with RNA-RNA and protein-RNA interactions, high-throughput sequencing data, RNA-RNA interactome, CLIP-seq, degradome sequencing, | Free, Freely available | SCR_025686 | starBase, ENCORI | 2026-08-14 09:29:06 | 389 | ||||||||||
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Ratan-lab (SUMO) Resource Report Resource Website 10+ mentions |
Ratan-lab (SUMO) (RRID:SCR_025687) | SUMO | source code, software resource | Software for multiomic nonnegative matrix factorization. | multiomic nonnegative matrix factorization, matrix factorization | DOI:10.1016/j.crmeth.2021.100152 | Free, Available for download, Freely available, | SCR_025687 | 2026-08-14 09:29:43 | 42 | |||||||||
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cfDNA UniFlow Resource Report Resource Website 1+ mentions |
cfDNA UniFlow (RRID:SCR_025600) | workflow software, data processing software, software application, data analysis software, software resource | Workflow for preprocessing cfDNA samples. Unified, standardized, and ready-to-use workflow for processing whole genome sequencing cfDNA samples from liquid biopsies. Includes steps for pre-processing raw cfDNA samples, quality control and reporting. Additionally, several optional utility functions like GC bias correction and estimation of copy number state are included. Provides specialized methods for extracting coverage derived signals and visualizations comparing cases and controls. | whole genome sequencing cfDNA samples, cell-free DNA data, liquid biopsies, | Berlin Institute of Health at Charite Universitaetsmedizin Berlin | DOI:10.1101/2024.06.01.24308210 | Free, Available for download, Freely available, | SCR_025600 | 2026-08-14 09:29:41 | 1 | |||||||||
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ReSpect for Phytochemicals Resource Report Resource Website 10+ mentions |
ReSpect for Phytochemicals (RRID:SCR_025688) | database, data or information resource | Collection of literature and in-house MSn spectra data for research on plant metabolomics. | Collection of literature, MSn spectra data, plant metabolomics, | has parent organization: RIKEN | RIKEN Plant Science Center ; Japan Science and Technology Agency ; Japan Advanced Plant Science Research Network ; Fuji Foundation for Protein Research |
PMID:22867903 | Restricted | SCR_025688 | RIKEN tandem mass spectral database | 2026-08-14 09:29:18 | 13 | |||||||
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University of California Irvine Center for Neural Circuit Mapping Viral Core Facility Resource Report Resource Website 1+ mentions |
University of California Irvine Center for Neural Circuit Mapping Viral Core Facility (RRID:SCR_025573) | service resource, access service resource, core facility | Viral production facility aims at development and production of viral vectors for in-vivo and in-vitro experimentation purposes. Equipment coupled with our expertise allows use to ensure high quality products. Provides all related sequence data, vector maps, plasmids and ready-to-use viruses once your orders are completed. | ABRF, viral vectors production, viral vectors development, viral vectors, |
is listed by: ABRF CoreMarketplace has parent organization: University of California at Irvine; California; USA |
Open | ABRF_2887 | https://coremarketplace.org/?FacilityID=2887&citation=1 | SCR_025573 | University of California Irvine Center for Neural Circuit Mapping Viral Core, Center for Neural Circuit Mapping Viral Core | 2026-08-14 09:29:16 | 2 |
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