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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Colorado State University Microscopes for Open Access Imaging Core Facility Resource Report Resource Website 1+ mentions |
Colorado State University Microscopes for Open Access Imaging Core Facility (RRID:SCR_025891) | MOAI | service resource, access service resource, core facility | Light and fluorescence microscopy core facility with Zeiss, Nikon, 3I, Leica and Olympus Microscopes. Distributed light microscopy core facility consisting of inverted and upright confocal microscopes (laser scanning and spinning disk) some with superresolution, atomic force microscopy, total internal fluorescence reflection (TIRF), high throughput multicolor imaging of fixed tissue sections or cells on slides, and live cell imaging in most modalities. | Light and fluorescence microscopy, inverted and upright confocal microscopes, laser scanning and spinning disk, imaging |
is listed by: ABRF CoreMarketplace has parent organization: Colorado State University; Colorado; USA |
ABRF_2958 | https://coremarketplace.org/?FacilityID=2958&citation=1 | SCR_025891 | , Microscopes for Open Access Imaging (MOAI), Microscopes for Open Access Imaging, Colorado State University Microscopes for Open Access Imaging, Colorado State University Microscopes for Open Access Imaging (MOAI) | 2026-08-14 09:29:08 | 1 | |||||||
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SEER*Stat Resource Report Resource Website 100+ mentions |
SEER*Stat (RRID:SCR_025808) | software application, software resource | Statistical software for analysis of SEER and other cancer-related databases.Used to view individual cancer records and to produce statistics for studying impact of cancer on population. | Statistics, analysis of SEER data, cancer records, |
is listed by: SEER Datasets and Software is related to: Surveillance Epidemiology and End Results works with: ProjPrev |
Restricted | https://seer.cancer.gov/seerstat/download/ | SCR_025808 | 2026-08-14 09:29:07 | 146 | |||||||||
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University of Michigan Rogel Cancer Center Experimental Irradiation Core Facility Resource Report Resource Website 1+ mentions |
University of Michigan Rogel Cancer Center Experimental Irradiation Core Facility (RRID:SCR_025766) | service resource, access service resource, core facility | Core provides irradiation services for investigators, including those whose primary interests are not in radiation biology, but who need this tool in support of other efforts, such immunosuppression of animals prior to stem cell transplantation through total body irradiation. Facility is equipped to perform moderate dose rate gamma irradiation (0.1-4 Gy/min) of cell cultures, tissue specimens or animals as well as low dose rate irradiation (0.05-0.3 Gy/hr) of cell cultures. | irradiation services, body irradiation, gamma irradiation, cell cultures, tissue specimens, animals, irradiation |
is listed by: ABRF CoreMarketplace has parent organization: University of Michigan; Ann Arbor; USA |
Open | ABRF_2928 | https://coremarketplace.org/?FacilityID=2928&citation=1 | SCR_025766 | University of Michigan Rogel Cancer Center Experimental Irradiation Shared Resource | 2026-08-14 09:29:19 | 1 | |||||||
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GSEApy Resource Report Resource Website 100+ mentions |
GSEApy (RRID:SCR_025803) | software toolkit, source code, software resource | Software Python package for performing gene set enrichment analysis. Used for characterizing gene expression changes by analysis of large single-cell datasets. | gene set enrichment analysis, characterizing gene expression changes, large single-cell datasets, | NIDA 5U01DA04439902 | PMID:36426870 | Free, Available for download, Freely available | https://github.com/zqfang/GSEApy | SCR_025803 | Gene Set Enrichment Analysis python | 2026-08-14 09:29:44 | 185 | |||||||
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Bruker OPUS Resource Report Resource Website 10+ mentions |
Bruker OPUS (RRID:SCR_025806) | software application, software resource | Software developed by Bruker for analysis and processing of spectroscopic data. Used for measurement, processing and evaluation of IR, NIR and Raman spectra. | Bruker, spectroscopic data, measurement, processing, evaluation, IR, NIR, Raman, spectra | Restricted | https://www.bruker.com/en/products-and-solutions/infrared-and-raman/opus-spectroscopy-software/downloads.html | SCR_025806 | OPUS 8.2, OPUS | 2026-08-14 09:29:19 | 30 | |||||||||
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University of Freiburg Cryo-Electron Microscopy Core Facility Resource Report Resource Website 1+ mentions |
University of Freiburg Cryo-Electron Microscopy Core Facility (RRID:SCR_025860) | service resource, access service resource, core facility | Core offers services related to cryo electron microscopy. Services include grid preparation, screening and data collection, as well as user training. | ABRF, cryo electron microscopy, grid preparation, screening, data collection, training |
is listed by: ABRF CoreMarketplace has parent organization: University of Freiburg; Baden-Wurttemberg; Germany |
Open | ABRF_2942 | https://coremarketplace.org/?FacilityID=2942&citation=1 | SCR_025860 | , University of Freiburg Cryo-Electron Microscopy Facility (CEF) Freiburg, Cryo-Electron Microscopy Facility (CEF) Freiburg, CryoEM Facility, University of Freiburg CryoEM Facility | 2026-08-14 09:29:08 | 2 | |||||||
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Max Planck Institute of Biochemistry Protein Production and Structural Validation Core Facility Resource Report Resource Website 1+ mentions |
Max Planck Institute of Biochemistry Protein Production and Structural Validation Core Facility (RRID:SCR_025741) | MPIB-PPCF | service resource, access service resource, core facility | Facility for protein production. Provides services for protein expression and purification, assists with projects in designing strategies for high level expression of soluble proteins, provides vectors and strains. Offers clonning the gene of interest into expression vectors, rapid screening for optimal combinations of vectors, strains and expression conditions and producing protein of interest in E. coli, Pichia pastoris, mammalian and insect cells. Produces biomass at 1L to 10L scale using multiple bioreactor system for high cell density fermentation of bacteria and yeast cells and reusable bioreactor for cell culture. Proteins are then purified using standard techniques and chromatography systems. Quality control is routinely assessing protein identity, purity, stability and folding using set of different biochemical and biophysical methods. | protein production, protein expression, protein purification, expression vectors, E. coli, Pichia pastoris, mammalian cells, insect cells, bioreactor, |
is listed by: ABRF CoreMarketplace has parent organization: Max Planck Institute of Biochemistry; Martinsried; Germany |
Restricted | ABRF_5776 | https://coremarketplace.org/RRID:SCR_025741/?citation=1 | SCR_025741 | Max Planck Institute of Biochemistry Protein Production and Structural Validation Facility, Protein Production Facility, Max Planck Institute of Biochemistry Protein Production Facility, Protein Production and Structural Validation Facility | 2026-08-14 09:29:18 | 8 | ||||||
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Max Planck Institute of Biochemistry Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Max Planck Institute of Biochemistry Bioinformatics Core Facility (RRID:SCR_025742) | MPIB-BIO | service resource, access service resource, core facility | Facility for bioinformatics. Offers to assist wet-lab researchers in our institute for their bioinformatics data analysis. | bioinformatics data analysis, | has parent organization: Max Planck Institute of Biochemistry; Martinsried; Germany | Restricted | SCR_025742 | Bioinformatics Core Facility, Max Planck Institute of Biochemistry Bioinformatics Core Facility | 2026-08-14 09:29:06 | 4 | ||||||||
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Max Planck Institute of Biochemistry Biochemistry Core Facility Resource Report Resource Website 1+ mentions |
Max Planck Institute of Biochemistry Biochemistry Core Facility (RRID:SCR_025743) | MPIB-BCB | service resource, access service resource, core facility | Facility for bioorganic chemistry and biophysics. Offers services for studying protein structure and folding, protein-protein or protein-ligand interactions and protein complex formation, synthesis, purification and characterization of organic compounds, automated solid phase synthesis of peptides. | bioorganic chemistry, biophysics, protein structure, protein folding, protein-protein interactions, protein-ligand interactions, protein complex formation, organic compounds, peptides | has parent organization: Max Planck Institute of Biochemistry; Martinsried; Germany | Restricted | SCR_025743 | Max Planck Institute of Biochemistry Biochemistry Core Facility, Biochemistry Core Facility | 2026-08-14 09:29:43 | 7 | ||||||||
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CopywriteR Resource Report Resource Website 10+ mentions |
CopywriteR (RRID:SCR_025864) | data processing software, software application, data analysis software, source code, software resource | Software R package for DNA copy number detection from off-target sequence data. Used to extract DNA copy number information from targeted sequencing by utiizing off-target reads. | DNA copy number detection, DNA copy number, targeted sequencing, off-target reads, | Free, Available for download, Freely available | https://bioconductor.org/packages/CopywriteR/ | SCR_025864 | 2026-08-14 09:29:20 | 29 | ||||||||||
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Arriba Resource Report Resource Website 10+ mentions |
Arriba (RRID:SCR_025854) | data processing software, software application, data analysis software, source code, software resource | Software tool for gene fusion detection from RNA-Seq data. Fusion detection algorithm specifically designed to meet demanding requirements of HTS-assisted precision oncology. Capable of detecting aberrant transcripts that are not called by most fusion detection methods but may be clinically relevant. This includes tumor suppressor genes that are occasionally inactivated by rearrangements within the gene or by translocations to introns or intergenic regions. | gene fusion detection, RNA-Seq data, detecting aberrant transcripts, | Heidelberg Center for Personalized Oncology ; Dietmar Hopp Foundation ; Ontario Institute for Cancer Research ; Government of Ontario |
PMID:33441414 | Free, Available for download, Freely available | SCR_025854 | 2026-08-14 09:29:08 | 34 | |||||||||
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InSituType Resource Report Resource Website 1+ mentions |
InSituType (RRID:SCR_025976) | software toolkit, source code, software resource | Software R package for performing cell typing in SMI and other single cell data. | performing cell typing, SMI, single cell data, | DOI:10.1101/2022.10.19.512902 | Free, Available for download, Freely available, | SCR_025976 | 2026-08-14 09:29:20 | 6 | ||||||||||
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Max Planck Institute of Biochemistry Cryo-EM Core Facility Resource Report Resource Website 10+ mentions |
Max Planck Institute of Biochemistry Cryo-EM Core Facility (RRID:SCR_025744) | MPIB_CEMF | service resource, access service resource, core facility | Facility for cryo-electron microscopy. Provides microscope access, training as well as scientific and technical support for MPIB-internal users wishing to perform cryo-EM experiments, from sample preparation to data processing. | cryo-electron microscopy, sample preparation, data processing | has parent organization: Max Planck Institute of Biochemistry; Martinsried; Germany | Restricted | SCR_025744 | Max Planck Institute of Biochemistry Cryo-EM Facility, Cryo-EM Facility | 2026-08-14 09:29:18 | 12 | ||||||||
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Max Planck Institute of Biochemistry Mass Spectrometry Core Facility Resource Report Resource Website 10+ mentions |
Max Planck Institute of Biochemistry Mass Spectrometry Core Facility (RRID:SCR_025745) | MPIB-MS | service resource, access service resource, core facility | Mass spectrometry core facility. Facility uses chromatography systems, mass spectrometers and workflows for in-depth analysis of biomolecules. | Mass spectrometry, chromatography systems, mass spectrometers, biomolecules, analysis, | has parent organization: Max Planck Institute of Biochemistry; Martinsried; Germany | Restricted | SCR_025745 | Mass Spectrometry Facility, Max Planck Institute of Biochemistry Mass Spectrometry Facility | 2026-08-14 09:29:07 | 19 | ||||||||
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Max Planck Institute of Biochemistry NGS Core Facility Resource Report Resource Website 10+ mentions |
Max Planck Institute of Biochemistry NGS Core Facility (RRID:SCR_025746) | MPIB-NGS | service resource, access service resource, core facility | Facility for high-throughput sequencing. Provides Next-Generation Sequencing services, supports library preparation and quality control for various applications including RNA-Seq: rRNA depletion-total RNA, mRNAseq; DNA-Seq: ChIP-Seq, Cut andTag seq, Hi-Cseq, Micro-Cseq, WGS; Single Cell: scRNAseq, scATACseq, snRNAseq, seRNAseq. | Next-Generation Sequencing services, high-throughput sequencing, library preparation, quality control | has parent organization: Max Planck Institute of Biochemistry; Martinsried; Germany | Restricted | SCR_025746 | NGS Core Facility, Max Planck Institute of Biochemistry NGS Core Facility | 2026-08-14 09:29:43 | 14 | ||||||||
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Augusta University Georgia Cancer Center Flow and Mass Cytometry Core Facility Resource Report Resource Website 10+ mentions |
Augusta University Georgia Cancer Center Flow and Mass Cytometry Core Facility (RRID:SCR_025747) | service resource, access service resource, core facility | Core provides access to flow and mass cytometers, support equipment, and associated software and services. Our instrumentation affords the ability to perform almost every published flow and mass cytometry protocol. | flow cytometry, mass cytometers, |
is listed by: ABRF CoreMarketplace has parent organization: Augusta University; Georgia; USA |
ABRF_2927 | https://coremarketplace.org/?FacilityID=2927&citation=1 | SCR_025747 | Georgia Cancer Center Flow and Mass Cytometry Core | 2026-08-14 09:29:18 | 15 | ||||||||
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PythonVideoAnnotator Resource Report Resource Website 1+ mentions |
PythonVideoAnnotator (RRID:SCR_025868) | software application, software resource | Software graphical application written in Python, to analyze videos and create notes for events in the video. Used to identify animals’ behaviors based on information extracted from video. | graphical application, analyze videos, create notes, identify animals’ behaviors, | Free, Freely available | SCR_025868 | 2026-08-14 09:29:44 | 1 | |||||||||||
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Peter MacCallum Cancer Centre Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Peter MacCallum Cancer Centre Bioinformatics Core Facility (RRID:SCR_025901) | service resource, access service resource, core facility | Provides services for data analysis, pipeline management, and artificial intelligence research and operations. Data types analysed by the core include whole-genome and whole-exome sequencing, targeted re-sequencing, radiological images, RNA-sequencing, single-cell RNA sequencing, ChIP-sequencing, NanoString and various types of microarray data. Core also develops and maintains software infrastructure required for bioinformatics processing, including pipelines and cloud provision systems. | ABRF, whole-genome, whole-exome sequencing, targeted re-sequencing, radiological images, RNA-sequencing, single-cell RNA sequencing, ChIP-sequencing, NanoString, microarray data, |
is listed by: ABRF CoreMarketplace has parent organization: Peter MacCallum Cancer Institute |
ABRF_2955 | https://coremarketplace.org/?FacilityID=2955&citation=1 | SCR_025901 | Peter MacCallum Cancer Center Bioinformatics Core Facility | 2026-08-14 09:29:09 | 4 | ||||||||
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SubtiWiki Resource Report Resource Website 1+ mentions |
SubtiWiki (RRID:SCR_025748) | database, data or information resource | Comprehensive database about Gram-positive model bacterium Bacillus subtilis. Provides curated information about its genes and proteins, as well as intricate protein–protein interactions, regulatory elements, expression data and metabolic pathways. | bacterium Bacillus subtilis, curated information, genes and proteins, intricate protein–protein interactions, regulatory elements, expression data, metabolic pathways. | PMID:34664671 | Free, Freely available | SCR_025748 | 2026-08-14 09:29:07 | 7 | ||||||||||
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EnrichDO Resource Report Resource Website 1+ mentions |
EnrichDO (RRID:SCR_025840) | EnrichDO | algorithm resource, software resource | Software R package as global weighted model for disease ontology enrichment analysis. Used for annotating and enrichment analysis with disease ontology. | disease ontology enrichment, disease ontology annotation, disease ontology, | Free, Available for download, Freely available | https://github.com/liangcheng-hrbmu/EnrichDO/ | SCR_025840 | 2026-08-14 09:29:08 | 1 |
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