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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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TransHLA Resource Report Resource Website 1+ mentions |
TransHLA (RRID:SCR_026171) | data processing software, software application, data analysis software, software resource, source code | Software tool to discern whether peptide will be recognized by HLA as epitope. Capable of directly identifying peptides as epitopes without the need for inputting HLA alleles. Hybrid transformer model for peptide-HLA epitope detection. | directly identifying peptides as epitopes, peptide, HLA, epitope, hybrid transformer model for peptide-HLA epitope detection, hybrid transformer model, peptide-HLA epitope detection, | Free, Available for download, Freely available | SCR_026171 | 2026-08-14 09:29:12 | 1 | |||||||||||
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National Cancer Institute Advanced Microscopy Applications Unit Core Facility Resource Report Resource Website 1+ mentions |
National Cancer Institute Advanced Microscopy Applications Unit Core Facility (RRID:SCR_026170) | ADMiRA | service resource, access service resource, core facility | Core answers research questions in any scientific, medical or industrial discipline through capture, processing, image analysis, training and sample preparation services for microscopy. Provides technical and scientific support in advanced microscopy and image processing and analysis. | ABRF, services, advanced microscopy, image processing and analysis, | is listed by: ABRF CoreMarketplace | Open | ABRF_2982 | https://coremarketplace.org/?FacilityID=2982&citation=1 | SCR_026170 | , UNAM, Advanced Microscopy Applications Unit (ADMiRA), Instituto Nacional de Cancerolog�a Advanced Microscopy Applications Unit (ADMiRA), RAI | 2026-08-14 09:29:23 | 1 | ||||||
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bees Resource Report Resource Website 1+ mentions |
bees (RRID:SCR_026102) | data processing software, software application, data analysis software, software resource, source code | Software R code for analysis of social evolution in bees. Social complexity trait database and code. R scripts for analysis of bees evolution. | Social complexity trait, social evolution in bees, social evolution, bees, social evolution analysis, bees evolution, | Free, Available for download, Freely available | SCR_026102 | 2026-08-14 09:29:22 | 1 | |||||||||||
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ChromoPainter Resource Report Resource Website 1+ mentions |
ChromoPainter (RRID:SCR_026062) | data processing software, software application, data analysis software, software resource | Software tool to discover haplotypes in sequenced data. Colors each individual as hybrid of all other sequences. The "coancestry matrix" exposes ancestral associations among individuals. ChromoPainter algorithm uses Hidden Markov Model and outputs range of features, such as expected number of recombination events and sample haplotypes. | discover haplotypes in sequenced data, discover haplotypes, sequenced data, | DOI:10.1371/journal.pgen.1002453 | Free, Available for download, Freely available | http://www.paintmychromosomes.com/ | SCR_026062 | 2026-08-14 09:29:22 | 7 | |||||||||
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CancerSEA Resource Report Resource Website 100+ mentions |
CancerSEA (RRID:SCR_026155) | database, data or information resource | Database that aims to comprehensively explore distinct functional states of cancer cells at the single-cell level. Provides functional state-associated PCG/lncRNA repertoires across all cancers, in specific cancers, and in individual cancer single-cell datasets. Provides interface for comprehensively searching, browsing, visualizing and downloading functional state activity profiles of cancer single cells and corresponding PCGs/lncRNAs expression profiles. | cancer single cells, PCGs/lncRNAs expression profiles, distinct functional states of cancer cells, single-cell level, searching, browsing, visualizing and downloading, functional state activity profiles, | National High Technology Research and Development Program of China ; National Natural Science Foundation of China |
PMID:30329142 | Free, Freely available | SCR_026155 | Cancer Single-cell State Atlas | 2026-08-14 09:29:45 | 202 | ||||||||
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Van Andel Institute Brain Bank Resource Report Resource Website 1+ mentions |
Van Andel Institute Brain Bank (RRID:SCR_026035) | storage service resource, service resource, material storage repository, biobank | Brain bank that houses donated brains from people with neurodegenerative diseases and neurologically normal age-matched controls. VAI Brain Bank drives insight and discovery by providing scientists the samples needed to investigate the intricate underpinnings of Parkinson’s, dementias, and other neurodegenerative diseases. | Biobank, donated brains, neurodegenerative diseases, |
is related to: Van Andel Institute MiND Blood Biorepository has parent organization: Van Andel Institute |
neurodegenerative diseases, Parkinson, dementia | SCR_026035 | 2026-08-14 09:29:21 | 3 | ||||||||||
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PlasGO Resource Report Resource Website 1+ mentions |
PlasGO (RRID:SCR_025983) | software toolkit, software resource, source code, software library | Software Python library (Linux or Ubuntu only) for predicting cluster level Gene Ontology terms of plasmid encoded proteins. | GO term prediction, plasmid protein function, protein language model, BERT | City University of Hong Kong ; Hong Kong Innovation and Technology Commission |
DOI:10.1101/2024.07.03.602011 | Free, Available for download, Freely available | SCR_025983 | 2026-08-14 09:29:21 | 1 | |||||||||
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Hispanic Community Health Study/Study of Latinos Resource Report Resource Website 10+ mentions |
Hispanic Community Health Study/Study of Latinos (RRID:SCR_026030) | data or information resource, portal, organization portal | Multi-center epidemiologic study in Hispanic/Latino populations to assess role of acculturation in prevalence and development of disease, and to identify factors playing protective or harmful role in health of Hispanics/Latinos. | Hispanic, Latino, populations, assess role, acculturation in prevalence and development of disease, identify factors, | Free, Freely available | https://sites.cscc.unc.edu/hchs/ | SCR_026030 | 2026-08-14 09:29:21 | 31 | ||||||||||
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spatialGE Resource Report Resource Website 1+ mentions |
spatialGE (RRID:SCR_025979) | data processing software, software application, data analysis software, source code, software resource | Software R package for spatial analysis of spatial transcriptomics data. Used for visualization and analysis of spatially-resolved gene expression. | spatial analysis, spatial transcriptomics data, spatially-resolved gene expression, | Free, Available for download, Freely available | SCR_025979 | spatialGE in R, R package | 2026-08-14 09:29:44 | 2 | ||||||||||
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CellBender Resource Report Resource Website 100+ mentions |
CellBender (RRID:SCR_025990) | software toolkit, source code, software resource | Software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing data. Deep generative model for noise removal in droplet-based single-cell RNA sequencing. | Deep generative model, noise removal, eliminating technical artifacts, high-throughput single-cell RNA sequencing data, | PMID:37550580 | https://cellbender.readthedocs.io/en/latest/ | SCR_025990 | 2026-08-14 09:29:44 | 247 | ||||||||||
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VarSome Resource Report Resource Website 100+ mentions |
VarSome (RRID:SCR_026165) | data access protocol, software resource, data or information resource, web service | Web service to search for variants, CNVs, genes, transcripts, publications, diseases. Annotation tool and search engine for human genomic variants, and platform enabling sharing of knowledge on specific variants. Enables users to look up variants in their genomic context, collects data from multiple databases in central location and most importantly, aims to enable community to freely and easily share knowledge on human variation. | Human genomic variant search engine, genomic variant, search engine, search, variants, CNVs, genes, transcripts, publications, diseases | PMID:30376034 | Free, Freely available | SCR_026165 | 2026-08-14 09:29:23 | 335 | ||||||||||
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Taiwan Birth Reporting System Database Resource Report Resource Website 1+ mentions |
Taiwan Birth Reporting System Database (RRID:SCR_026047) | database, data or information resource | Provides comprehensive national registry that systematically records all live births in Taiwan. It captures essential data on maternal and infant health, including maternal demographics, prenatal care, gestational age, birth weight, delivery method, and congenital anomalies. Established to facilitate public health monitoring and research, the TBRS enables studies on birth trends and outcomes, such as preterm birth and low birth weight, and provides a valuable resource for investigating the impacts of maternal health, environmental factors, and healthcare access on neonatal outcomes.TBRS database is instrumental in informing maternal and child health policies in Taiwan. | national registry, systematical recordings, live births, Taiwan | Free, Freely available | SCR_026047 | TBRS database | 2026-08-14 09:29:45 | 2 | ||||||||||
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SPATA2 Resource Report Resource Website 10+ mentions |
SPATA2 (RRID:SCR_026167) | software toolkit, source code, software resource | Software package provides framework of functions and shiny-applications to work with spatial expression data. Used for spatial transcriptomics analysis. | Spatial trascriptomics analysis, spatial expression data, spatial transcriptomics, | German Cancer Consortium ; German Research Foundation ; iGerman Ministry of Education and Research ; European Innovation Council ; Joachim Herz Foundation |
DOI:10.1038/s41467-024-50904-x | Free, Available for download, Freely available | https://github.com/theMILOlab/SPATA2 | SCR_026167 | 2026-08-14 09:29:12 | 29 | ||||||||
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Taiwan National Health Insurance Database Resource Report Resource Website 10+ mentions |
Taiwan National Health Insurance Database (RRID:SCR_026048) | database, data or information resource | Provides comprehensive dataset based on National Health Insurance program, which has covered over 99% of Taiwan's population since its launch in 1995. Database includes anonymized data on outpatient and inpatient visits, prescriptions, surgeries, diagnostics, and other medical information, ensuring individual privacy protection. NHI database is extensively utilized in fields such as public health, epidemiology, drug safety, and chronic disease monitoring, providing critical insights for research on major health conditions like cancer and cardiovascular diseases. Researchers use the NHIRD for long-term follow-up studies, treatment outcome analyses, and identifying disease risk factors, making it a valuable resource for healthcare policy and medical decision-making. | National Health Insurance, Taiwan, inpatient visits, prescriptions, surgeries, diagnostics, medical information, ensuring individual privacy protection, | Free, Freely available | SCR_026048 | TNHI database | 2026-08-14 09:29:21 | 40 | ||||||||||
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TRUST4 Resource Report Resource Website 10+ mentions |
TRUST4 (RRID:SCR_026162) | data processing software, software application, data analysis software, software resource, source code, sequence analysis software | Software tool to analyze TCR and BCR sequences using unselected RNA sequencing data, profiled from fluid and solid tissues, including tumors. Performs de novo assembly on V, J, C genes including the hypervariable complementarity-determining region 3 and reports consensus contigs of BCR/TCR sequences. TRUST4 then realigns the contigs to IMGT reference gene sequences to identify the corresponding gene and CDR3 details. TRUST4 supports both single-end and paired-end bulk or single-cell sequencing data with any read length. | analyze TCR and BCR sequences, de novo assembly, unselected RNA sequencing data, fluid and solid tissues, tumors, | NCI U01CA226196; NCI U24CA224316 |
PMID:33986545 | Free, Available for download, Freely available | SCR_026162 | 2026-08-14 09:29:12 | 12 | |||||||||
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SMR Resource Report Resource Website 50+ mentions |
SMR (RRID:SCR_026042) | SMR | data processing software, software application, data analysis software, software resource | Software tool to test for pleiotropic association between expression level of gene and complex trait of interest using summary-level data from GWAS and expression quantitative trait loci eQTL studies. Used to prioritize genes underlying GWAS hits for follow up functional studies. | pleiotropic association, expression level of gene, complex trait, prioritize genes underlying GWAS hits, follow up functional studies, | SCR_026042 | , Summary-data-based Mendelian Randomization, SMR v1.3.1 | 2026-08-14 09:29:10 | 51 | ||||||||||
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Destiny Resource Report Resource Website 1+ mentions |
Destiny (RRID:SCR_026163) | software toolkit, source code, software resource | Software R package for single cell and other data analysis using diffusion maps. Package for diffusion maps, with additional features for large-scale and single cell data. | single cell, data analysis, diffusion maps, | Free, Available for download, Freely available | SCR_026163 | 2026-08-14 09:29:46 | 5 | |||||||||||
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Johns Hopkins Reference Histology Core Facility Resource Report Resource Website 1+ mentions |
Johns Hopkins Reference Histology Core Facility (RRID:SCR_025986) | service resource, access service resource, core facility | Provides histology services for Autopsy, Cytology, Renal Pathology and Medical Archives Office within Department of Pathology. In conjunction with Pathology Send Out and Archives divisions, provides histology for clinical trial requests, scientific study or interest involving pathology materials. Services include: Complete routine paraffin histology services, including processing and sectioning; Special stains, including but not limited to carbohydrates, connective tissue, fats, lipids, microorganisms, nuclear elements, pigments, silver techniques; Immunopathology slide preparation techniques;DNA slide preparations; Frozen tissue sections; Oversized tissue processing and sectioning ;Histopathology teaching sets; Customized procedures.Services are provided for both human and animal tissue samples. | ABRF, histology services, Autopsy, Cytology, Renal Pathology, Medical Archives, human and animal tissue samples, |
is listed by: ABRF CoreMarketplace has parent organization: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA |
Open | ABRF_2968 | https://coremarketplace.org/?FacilityID=2968&citation=1 | SCR_025986 | Johns Hopkins Reference Histology | 2026-08-14 09:29:44 | 1 | |||||||
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Phynteny Resource Report Resource Website 1+ mentions |
Phynteny (RRID:SCR_026015) | data processing software, software application, data analysis software, source code, software resource | Software synteny-based tool for annotation of bacteriophage genes. Used to predict function of phage hypothetical proteins using LSTM model trained with Phage Synteny. | bacteriophage genes, annotation of bacteriophage genes, predict function, phage hypothetical proteins, | Free, Available for download, Freely available, | SCR_026015 | 2026-08-14 09:29:21 | 2 | |||||||||||
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ChemPartner Resource Report Resource Website 1+ mentions |
ChemPartner (RRID:SCR_026139) | service resource, commercial organization | Life sciences contract research organization. Provides integrated life science services for drug discovery with expertise in chemistry, biology and pharmacology, DMPK, and exploratory toxicology as well as biologics discovery. | life science services, drug discovery, expertise, chemistry, biology, pharmacology, DMPK, exploratory toxicology, biologics discovery, | SCR_026139 | 2026-08-14 09:29:11 | 5 |
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