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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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MutationTaster Resource Report Resource Website 1000+ mentions |
MutationTaster (RRID:SCR_010777) | MutationTaster | analysis service resource, service resource, data analysis service, production service resource | Evaluates disease-causing potential of sequence alterations. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is listed by: SoftCite |
PMID:20676075 | Acknowledgement requested | biotools:mutation_taster, OMICS_00153 | https://bio.tools/mutation_taster | SCR_010777 | 2026-08-14 09:26:21 | 4781 | ||||||
|
Genomic HyperBrowser Resource Report Resource Website 10+ mentions |
Genomic HyperBrowser (RRID:SCR_010909) | Genomic HyperBrowser | analysis service resource, service resource, data analysis service, production service resource | A generic web-based system, providing statistical methodology and computing power to handle a variety of biological inquires on genomic datasets. | genomic, genomic track, gene regulation, disease association, epigenetic modification, genome |
is listed by: OMICtools has parent organization: University of Oslo; Oslo; Norway |
PMID:23632163 PMID:21182759 |
OMICS_00638 | SCR_010909 | The Genomic HyperBrowser | 2026-08-14 09:26:21 | 20 | |||||||
|
UCSC Cancer Genomics Browser Resource Report Resource Website 500+ mentions |
UCSC Cancer Genomics Browser (RRID:SCR_011796) | Cancer Genomics Browser | data or information resource, service resource, database | A suite of web-based tools to visualize, integrate and analyze cancer genomics and its associated clinical data. It is possible to display your own clinical data within one of their datasets. | genome, genomics, clinical, next-generation sequencing, chromosome, gene, FASEB list |
is listed by: OMICtools has parent organization: University of California at Santa Cruz; California; USA |
Cancer | NCI ; NHGRI ; American Association for Cancer Research ; UCSF Comprehensive Cancer Center ; California Institute for Quantitative Biosciences |
PMID:23109555 PMID:21059681 PMID:19333237 |
Acknowledgement requested | OMICS_00925 | SCR_011796 | 2026-08-14 09:26:20 | 589 | |||||
|
LabLog Resource Report Resource Website |
LabLog (RRID:SCR_013975) | software application, electronic laboratory notebook, software resource | An ELN (electronic lab notebook) software application which can be used to document neuroscience projects and store metadata. LabLog is meant to constitute a laboratory's long term memory for project related information. To do this, project information is stored in a central laboratory database and can be easily retrieved by searching and filtering. | ELN, electronic laboratory notebook, software application, data management, lab management, neuroscience |
is listed by: Connected Researchers is related to: Connected Researchers |
Free | SCR_013975 | Laboratory Logbook | 2026-08-14 09:26:50 | 0 | |||||||||
|
WebMGA Resource Report Resource Website 100+ mentions |
WebMGA (RRID:SCR_011951) | WebMGA | analysis service resource, service resource, data analysis service, production service resource | A customizable web server for fast metagenomic analysis. |
is listed by: OMICtools has parent organization: University of California at San Diego; California; USA |
OMICS_01524 | SCR_011951 | 2026-08-14 09:26:42 | 196 | ||||||||||
|
labfolder Resource Report Resource Website 1+ mentions |
labfolder (RRID:SCR_013974) | software application, electronic laboratory notebook, software resource | An ELN (electronic lab notebook) software application where researchers can record and organize their data by recording, dragging, and dropping elements. Users can utilize tools and features such as image annotation, search and filter, protocol templates, and team communication. The format of the ELN is customizable and can be rearranged at any point. | ELN, electronic laboratory notebook, software application, data management, lab management, |
is listed by: Connected Researchers is related to: Connected Researchers |
Available to the research and education community, Fee for different packages (pay per user per month) | SCR_013974 | Labfolder, LabFolder | 2026-08-14 09:26:45 | 1 | |||||||||
|
GenoREAD Resource Report Resource Website |
GenoREAD (RRID:SCR_012007) | GenoREAD | analysis service resource, service resource, data analysis service, production service resource | A sequence verification pipeline where users can submit trace files to verify if a clone''s physical sequence matches its reference sequence. | clone, verification, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Virginia Bioinformatics Institute |
PMID:23042248 | Acknowledgement requested | OMICS_01823, biotools:genoread | https://bio.tools/genoread | SCR_012007 | GenoREAD - Sequencing Verification Pipeline | 2026-08-14 09:26:21 | 0 | |||||
|
Dhruv Dental Stem Cell Bank Resource Report Resource Website |
Dhruv Dental Stem Cell Bank (RRID:SCR_010744) | biomaterial supply resource, tissue bank, material resource | Not yet vetted by NIF curator | nlx_98186 | SCR_010744 | 2026-08-14 09:26:17 | 0 | ||||||||||||
|
Mayo Validation Support Services Biobank Resource Report Resource Website |
Mayo Validation Support Services Biobank (RRID:SCR_010745) | Mayo Validation Support Services Biospecimens | biomaterial supply resource, tissue bank, material resource | A core laboratory facility provides high-volume, high-quality tissue and biospecimen preparation and processing in support of Mayo research. Mayo Validation Support Services utilizes these resources to deliver extensive validation capabilities specific to individualized Sponsor requirements. Medical scientific expertise at Mayo Clinic allows for unique collaborations combining quality biospecimens linked to comprehensive clinical outcomes. Biospecimens can be accessed via archives or prospectively collected via individualized standard operating procedures. Patient information for all biospecimens is protected through oversight by an Institutional Review Board (IRB). Specimens may be collected and/or processed in a variety of customized formats for individual collaborations. Typical formats include: * Specimen Processing: Tissue RNA/DNA extraction capabilities, Paraffin and frozen sectioning, Immunostaining, Digital imaging, Laser capture microdissection, Tissue microarray construction, Preparation of protocol-collected tissue (FFPE, OCT, Snap-frozen, PBS) * Blood: Circulating tumor cells, Serum, Plasma, PBMC, Whole blood for FACS analysis, Blood smears * Other: Induced sputum, Saliva, Buccal swabs, Lip biopsies, Colonoscopy biopsies, Synovium, Stool, Urine Biospecimens located within archives are well-characterized and associated with phenotypic information. Multiple types and formats of biospecimens are available for customized validation purposes. | blood, tumor cells, serum, plasma, pbmc, whole blood, blood smears, sputum, saliva, buccal swabs, lip biopsies, colonoscopy biopsies, synovium, stool, urine rna, dna, paraffin, frozen, immunostaining, digital imaging, laser capture microdissection, tissue microarray, ffpe, oct, snap-frozen, pbs, private, (in support of mayo research) |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Mayo Clinic Minnesota; Minnesota; USA |
Private: in support of Mayo research | nlx_98533 | SCR_010745 | Mayo Validation Support Services Quality Biospecimens | 2026-08-14 09:26:35 | 0 | |||||||
|
Multiple Sclerosis Research Australia Brain Bank Resource Report Resource Website |
Multiple Sclerosis Research Australia Brain Bank (RRID:SCR_010747) | MS Research Australia Brain Bank | biomaterial supply resource, tissue bank, material resource | Biomaterial supply resource which provides high quality and well-chracaterized brain tissue samples for MS research. Registered MS brain donors and their families are kept up to date on the latest progress in MS research. | biomaterial supply resource, brain, brain tissue, brain bank, MS, multiple sclerosis | is listed by: Multiple Sclerosis Discovery Forum | Multiple Sclerosis | Trish MS Research Foundation ; University of Sydney ; Collier Charitable Fund ; NSW Government Office for Science and Medical Research ; MS Research Australia |
Free, Freely available | SCR_013840, nlx_99028 | SCR_010747 | 2026-08-14 09:26:17 | 0 | ||||||
|
Australian Prostate Cancer Tissue Bank Resource Report Resource Website 1+ mentions |
Australian Prostate Cancer Tissue Bank (RRID:SCR_013221) | biomaterial supply resource, tissue bank, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 31,2023. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_13972 | SCR_013221 | 2026-08-14 09:26:37 | 1 | |||||||||||
|
PLAN2L Resource Report Resource Website |
PLAN2L (RRID:SCR_013346) | PLAN2L | data or information resource, service resource, database | A web-based online search system that integrates text mining and information extraction techniques to access systematically information useful for analyzing genetic, cellular and molecular aspects of the plant model organism Arabidopsis thaliana. The system facilitates a more efficient retrieval of information relevant to heterogeneous biological topics, from implications in biological relationships at the level of protein interactions and gene regulation, to sub-cellular locations of gene products and associations to cellular and developmental processes, i.e. cell cycle, flowering, root, leaf and seed development. Beyond single entities, also predefined pairs of entities can be provided as queries for which literature-derived relations together with textual evidences are returned. | text mining, bio-entity relation extraction, literature, information extraction, cell cycle, regulation, protein interaction, cellular location, flowering, leave, root, seed, gene, normalization, interaction, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Spanish National Cancer Research Center |
PMID:19520768 | OMICS_01192, biotools:plan2l | https://bio.tools/plan2l | SCR_013346 | PLAN2L: Plant Annotation to Literature, Plant annotation to literature | 2026-08-14 09:26:43 | 0 | ||||||
|
National Cell Culture Center Resource Report Resource Website 1+ mentions |
National Cell Culture Center (RRID:SCR_013467) | NCCC | biomaterial supply resource, tissue bank, material resource | Provides access to large scale cell culture at reasonable cost. The Cell Culture Center has experience with the production of over 1700 cell lines. Numerous common cell lines, such as HeLa, CHO, 293, BHK, and hybridomas are routinely produced at the Center. We will adapt your cell line or custom protocol to large scale production then deliver the cells in the quantity and frequency you need. Large Scale Production Services: Mammalian cells: Suspension culture (1 to 400 liters per day), Anchorage dependent culture (1 to 200 roller bottles per batch), Purified monoclonal antibodies (10 mg to 100 grams), Non-hybridoma cell secreted proteins, Conditioned media Secreted proteins from suspension cultures can be produced in automated hollow fiber bioreactor systems. These systems may be considered after initial static culture production yields are determined. Upon determining the quantities requested by the investigator, the appropriate automated system will be used. For more information on the automated instrumentation available for the use of secreted protein production, please refer to the Biovest International web page (www.biovest.com). Working with our experienced personnel and quality controlled, state-of-the-art facilities also permits access to large quantities of cells or protein so you aren''t limited by the cell culture capacities of your own laboratory. The Center fulfills the needs of small research laboratories as well as those of larger institutions. Customers from all sectors of the research and industrial community are welcome to inquire about our services. If you''d like to inquire about using our services, use the contact infromation below. Key words: Cell, cells, culture, monoclonal, antibodies, antibody. | is listed by: One Mind Biospecimen Bank Listing | All | NIH Blueprint for Neuroscience Research | nif-0000-00566 | SCR_013467 | 2026-08-14 09:26:57 | 4 | ||||||||
|
CRAVAT Resource Report Resource Website 10+ mentions |
CRAVAT (RRID:SCR_012776) | CRAVAT | analysis service resource, service resource, data analysis service, production service resource | A web-based application designed with an easy-to-use interface to facilitate the high-throughput assessment and prioritization of genes and missense alterations important for cancer tumorigenesis. |
is listed by: OMICtools has parent organization: Johns Hopkins University; Maryland; USA |
Cancer | NCI CA 152432; NSF DBI 0845275; NCI 1U01CA180956-01 |
OMICS_00147 | SCR_012776 | cancer-related analysis of variants toolkit | 2026-08-14 09:26:33 | 30 | |||||||
|
StemCord Cord Blood Bank Resource Report Resource Website |
StemCord Cord Blood Bank (RRID:SCR_013502) | biomaterial supply resource, tissue bank, material resource | Not yet vetted by NIF curator | nlx_15565 | SCR_013502 | 2026-08-14 09:26:45 | 0 | ||||||||||||
|
Chemical Translation Service Resource Report Resource Website 10+ mentions |
Chemical Translation Service (RRID:SCR_014681) | CTS | data or information resource, service resource, database | A translation service which contains a registry of pubicly available chemical information such as structures, chemical names, chemical synonyms, database identifiers, molecular masses, XlogP and proton-donor/acceptor data for compound-specific, structure-based cross references. It offers single ID conversion, batch ID conversion, InChI code conversion, and other services. | translation service, chemical translation, metabolomics, metabolomics tool, chemical properties, chemical structure, compound, chemical registry, cross reference |
is listed by: Metabolomics Workbench has parent organization: Metabolomics Fiehn Lab |
Available to public, A web GUI is used and a soap-based application-programming interface was implemented for automated access | SCR_014681 | Chemical Translation Service (CTS) | 2026-08-14 09:26:57 | 25 | ||||||||
|
DSAP Resource Report Resource Website 1+ mentions |
DSAP (RRID:SCR_013352) | DSAP | analysis service resource, service resource, data analysis service, production service resource | A web server designed to provide a total solution to analyze small RNAs sequencing data generated by SOLEXA., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
PMID:20478825 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:dsap, OMICS_00357 | https://bio.tools/dsap | SCR_013352 | 2026-08-14 09:26:43 | 8 | ||||||
|
CATALYSTLite Resource Report Resource Website |
CATALYSTLite (RRID:SCR_017126) | analysis service resource, service resource, data analysis service, production service resource | Software tool as interactive Shiny web application that provides user interface to mass cytometry data processing pipeline implemented in CATALYST R Bioconductor package. | interactive, Shiny, website, application, interface, mass, cytometry, data, processing, pipeline |
is used by: CATALYST is related to: Bioconductor has parent organization: University of Zurich; Zurich; Switzerland |
Free, Freely available | SCR_017126 | 2026-08-14 09:27:42 | 0 | ||||||||||
|
SIFT 4G Resource Report Resource Website 1+ mentions |
SIFT 4G (RRID:SCR_021850) | analysis service resource, service resource, data analysis service, production service resource | Software tool to predict whether amino acid substitution affects protein function. Faster version of SIFT that enables to scale up and provide SIFT predictions for more organisms. | sequence homology, amino acids physical properties, amino acid substitution, protein function | is related to: SIFT | Free, Available for download, Freely available | https://github.com/rvaser/sift4g | SCR_021850 | Sorting Intolerant From Tolerant For Genomes, SIFT4G | 2026-08-14 09:28:26 | 4 | ||||||||
|
Phenotypes and Mutant Alleles Resource Report Resource Website 10+ mentions |
Phenotypes and Mutant Alleles (RRID:SCR_017523) | data or information resource, service resource, database | Enables comparative phenotype analysis, searches for human disease models, and hypothesis generation by providing access to spontaneous, induced, and genetically engineered mutations and their strain-specific phenotypes. | MGI, phenotype, human, disease, analysis, model, genetically, engineered, mutation, strain, specific, phenotype, data | has parent organization: Mouse Genome Informatics (MGI) | Free, Freely available | SCR_017523 | Phenotypes, Alleles & Disease Models | 2026-08-14 09:27:47 | 13 |
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