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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Xenome Resource Report Resource Website 1+ mentions |
Xenome (RRID:SCR_026266) | data processing software, software application, data analysis software, software resource | Software tool to distinguish host and graft reads from next generation sequencing assays of xenograft samples. Performs classification of xenograft-derived sequence read data. | distinguish host and graft reads, next generation sequencing assays, xenograft samples, classification of xenograft-derived sequence read data, xenograft-derived sequence read data, | Prostate Cancer Foundation of Australia ; Victorian Government Operational Infrastructure Support |
PMID:22689758 | Free, Freely available, | SCR_026266 | 2026-08-14 09:29:13 | 2 | |||||||||
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TomoVision sliceOmatic Resource Report Resource Website 1+ mentions |
TomoVision sliceOmatic (RRID:SCR_026268) | data processing software, software application, data analysis software, software resource | Medical image analysis software to measure, segment and analyze multi-slice scanner data. | TomoVision, medical image analysis, measure, segment, analyze, multi-slice scanner data, | Restricted | SCR_026268 | 2026-08-14 09:29:46 | 7 | |||||||||||
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University of Texas MD Anderson Advanced Technology Genomics Core Facility Resource Report Resource Website 1+ mentions |
University of Texas MD Anderson Advanced Technology Genomics Core Facility (RRID:SCR_026261) | service resource, access service resource, core facility | Genomics core facility with goal to use instrumentation and innovative technical expertise in order to provide investigators with genomic data from comprehensive range of genomic services in timely manner. Services include Next-Generation Sequencing, Sanger Sequencing Single Cell Sequencing, Microarray Services, Fluorescent Fragment Length Analysis, nanoString nCounter Analysis, Bionano Optical Genome Mapping, Spatial Transcriptomics, Nanopore Sequencing. | ABRF, Next-Generation Sequencing, Sanger Sequencing, Single Cell Sequencing, Microarray Services, Fluorescent Fragment Length Analysis, nanoString nCounter Analysis, Bionano Optical Genome Mapping, Spatial Transcriptomics, Nanopore Sequencing, |
is listed by: ABRF CoreMarketplace has parent organization: University of Texas System; Texas; USA |
Restricted | ABRF_3001 | https://coremarketplace.org/?FacilityID=3001&citation=1 | SCR_026261 | , Advanced Technology Genomics Core (ATGC), Advanced Technology Genomics Core, MD Anderson Advanced Technology Genomics Core Facility, MD Anderson Advanced Technology Genomics Core | 2026-08-14 09:29:46 | 4 | |||||||
|
microViz Resource Report Resource Website 10+ mentions |
microViz (RRID:SCR_026510) | software toolkit, source code, software resource | Software R package for microbiome data visualization and statistics. Docker image available. | microbiome data, visualization and statistics, |
uses: phyloseq uses: vegan uses: tidyverse |
Free, Available for download, Freely available | https://github.com/david-barnett/microViz/ | SCR_026510 | 2026-08-14 09:29:28 | 15 | |||||||||
|
Chronos-Fit software Resource Report Resource Website 1+ mentions |
Chronos-Fit software (RRID:SCR_026472) | data processing software, software application, data analysis software, software resource | Software tool for analysis of biological rhythms, particularly circadian rhythms, using curve fitting methods to model time-series data and determine key parameters such as period, amplitude, and phase. | analysis of biological rhythms, circadian rhythms, biological rhythms, rhythms analysis, | Free, Freely available | SCR_026472 | 2026-08-14 09:29:48 | 1 | |||||||||||
|
WallProtDB Resource Report Resource Website 1+ mentions |
WallProtDB (RRID:SCR_026506) | database, data or information resource | Database resource for plant cell wall proteomics. Aims at collecting cell wall proteomic experimental data. For each experiment, a scheme summarizing the strategy used for protein isolation and identification is provided. | plant cell wall proteomics, collecting cell wall proteomic experimental data, | PMID:25614757 PMID:35457091 |
Free, Freely available | SCR_026506 | WallProtDB-2 | 2026-08-14 09:29:48 | 2 | |||||||||
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mice Resource Report Resource Website 10+ mentions |
mice (RRID:SCR_026363) | MICE | data processing software, software application, software resource, data transfer software | Software package implements method to deal with missing data. The package creates multiple imputations (replacement values) for multivariate missing data.Various diagnostic plots are available to inspect the quality of the imputations. | missing data, multiple imputations, replacement values, multivariate missing data, | https://github.com/amices/mice | SCR_026363 | , mice: Multivariate Imputation by Chained Equations, Multivariate Imputation by Chained Equations | 2026-08-14 09:29:15 | 25 | |||||||||
|
AutoDockTools Resource Report Resource Website 1000+ mentions |
AutoDockTools (RRID:SCR_026401) | ADT | software application, software resource | Software graphical user interface to help to set up which bonds will treated as rotatable in the ligand and to analyze dockings. Used for automated docking with selective receptor flexibility. Designed to predict how small molecules, such as substrates or drug candidates, bind to receptor of known 3D structure. | automated docking, selective receptor flexibility, predict binding, bind to receptor of known 3D structure, ligand, analyze dockings | NIGMS RO1 GM069832 | PMID:19399780 | Free, Available for download, Freely available | https://autodock.scripps.edu/ | SCR_026401 | AutoDockTools: the Graphical User Interface for AutoDock | 2026-08-14 09:29:16 | 2063 | ||||||
|
RIVET Resource Report Resource Website 1+ mentions |
RIVET (RRID:SCR_026488) | source code, software application, software resource | Software tool to automate statistical analysis of RNA seq data acquired from polysome profile or ribosome footprinting experiments. | automate statistical analysis, RNA seq data, polysome profile, ribosome footprinting experiments, | https://github.com/ruggleslab/rivet | SCR_026488 | Ribosomal Investigation and Visualization to Evaluate Translation | 2026-08-14 09:29:48 | 1 | ||||||||||
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Howard Hughes Medical Institute at Janelia Research Campus Immortalized Cell Line Culture Shared Resource Core Facility Resource Report Resource Website 1+ mentions |
Howard Hughes Medical Institute at Janelia Research Campus Immortalized Cell Line Culture Shared Resource Core Facility (RRID:SCR_026515) | service resource, access service resource, core facility | Core offers support for various tasks such as plating, passaging, cryopreserving, transfection, and preparing cells for imaging and other applications. Our facility fosters collaboration, allowing researchers to reserve cell culture hoods and engage with fellow lab and staff members. | plating, passaging, cryopreserving, transfection, preparing cells for imaging, |
is listed by: ABRF CoreMarketplace has parent organization: Howard Hughes Medical Institute |
ABRF_3074 | https://coremarketplace.org/?FacilityID=3074&citation=1 | SCR_026515 | Immortalized Cell Line Culture | 2026-08-14 09:29:48 | 1 | ||||||||
|
University of Texas Institute for Personalized Cancer Therapy Cancer Genomics Laboratory Core Facility Resource Report Resource Website 1+ mentions |
University of Texas Institute for Personalized Cancer Therapy Cancer Genomics Laboratory Core Facility (RRID:SCR_026469) | service resource, access service resource, core facility | Provides services and instrumentation including Illumina Next-Generation Sequencing, Single Cell Analysis and Spatial Transcriptomics. These techniques are developed and optimized by our lab scientists to deliver the highest-possible quality sequencing data from a wide variety of sample types such as peripheral blood, bone marrow, fresh frozen tissue and FFPE-derived tumor samples. | ABRF, Next-Generation Sequencing, Single Cell Analysis, Spatial Transcriptomics, Genomics, |
is listed by: ABRF CoreMarketplace has parent organization: University of Texas System; Texas; USA |
Open | ABRF_3061 | https://coremarketplace.org/?FacilityID=3061&citation=1 | SCR_026469 | 2026-08-14 09:29:17 | 1 | ||||||||
|
Eastern Cooperative Oncology Group Performance Status Scale Resource Report Resource Website 1+ mentions |
Eastern Cooperative Oncology Group Performance Status Scale (RRID:SCR_026432) | standard specification, portal, data or information resource, organization portal, narrative resource | ECOG Performance Scale describes patient’s level of functioning in terms of their ability to care for themself, daily activity, and physical ability (walking, working, etc.). Standard criteria for measuring how the disease impacts patient’s daily living abilities. Used to assess the functional status of patient. | ECOG-ACRIN Cancer Research Group, patient’s performance status, assess patient functional status, conduct clinical trials, | NCI | Free, Freely available | SCR_026432 | ECOG Performance Status Scale | 2026-08-14 09:29:17 | 5 | |||||||||
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MMseq2 Resource Report Resource Website 1+ mentions |
MMseq2 (RRID:SCR_026553) | software toolkit, source code, software resource | Software suite to search and cluster huge protein and nucleotide sequence sets. Sensitive protein sequence searching for analysis of massive data sets. Used for ultra fast and sensitive search and clustering. | search and cluster huge protein sets, search and cluster nucleotide sequence sets, protein sequence searching, analysis of massive data sets, | European Research Council's Horizon 2020 Framework Programme for Research and Innovation ; German Federal Ministry for Education and Research |
PMID:29035372 | Free, Available for download, Freely available | SCR_026553 | Many-against-Many sequence searching | 2026-08-14 09:29:18 | 3 | ||||||||
|
Polars Resource Report Resource Website 1+ mentions |
Polars (RRID:SCR_026431) | data or information resource, portal, service resource, organization portal | Open-source DataFrame library for data manipulation known for being one of the fastest data processing solutions on single machine. Features well-structured, typed API that is both expressive and easy to use. DataFrame interface on top of OLAP Query Engine implemented in Rust using Apache Arrow Columnar Format as the memory model. | DataFrame interface, DataFrame library, data manipulation, data query, data processing, data analysis, | Free, Freely available | SCR_026431 | 2026-08-14 09:29:27 | 4 | |||||||||||
|
WHODrug Global Resource Report Resource Website 1+ mentions |
WHODrug Global (RRID:SCR_026433) | data or information resource, portal, organization portal | International reference guide for medicinal products maintained by the Uppsala Monitoring Centre. With its unique drug code hierarchy and extensive coverage, it provides consistent drug dictionary with exact terminology when coding concomitant medications. Dictionary is used to identify drug names and evaluate medicinal product information, including active ingredients and products’ anatomical and therapeutic classifications, from nearly 150 countries. Data covers both conventional medicines and herbal remedies. Data is continuously updated, with new releases twice a year, on 1 March and 1 September. | World Health Organization, WHO, Upsala Monitoring Centre, International reference, medicinal product information, drug code hierarchy, drug dictionary, drug terminology, conventional medicines, herbal remedies, | Free, Freely available | SCR_026433 | , World Health Organization Drug Dictionary, WHO Drug Dictionary | 2026-08-14 09:29:47 | 1 | ||||||||||
|
Emory University NIH Tetramer Core Facility Resource Report Resource Website 50+ mentions |
Emory University NIH Tetramer Core Facility (RRID:SCR_026557) | service resource, access service resource, core facility | Core produces and distributes of MHC/peptide tetramers and related reagents. Production and distribution to the research community of major histocompatibility complex (MHC) tetramers and related reagents for detection of T cell responses to viruses, bacteria, parasites, tumors, auto-antigens, and other model antigens. Reagents are provided to qualified investigators at no cost, except for shipping and handling fees and in cases where investigator is asked to provide the TCF with peptide or other appropriate ligands. | ABRF, produces and distributes of MHC/peptide tetramers and related reagents, MHC/peptide tetramers, histocompatibility complex (MHC) tetramers, |
is listed by: ABRF CoreMarketplace has parent organization: Emory University; Georgia; USA |
Open | ABRF_3093 | https://coremarketplace.org/?FacilityID=3093&citation=1 | SCR_026557 | , NIH Tetramer Facility, NIH Tetramer Core Facility | 2026-08-14 09:29:18 | 91 | |||||||
|
Mayo Clinic Spatial Biology Core Facility Resource Report Resource Website 1+ mentions |
Mayo Clinic Spatial Biology Core Facility (RRID:SCR_026548) | service resource, access service resource, core facility | Core provides broad range of spatial transcriptomic and targeted proteomics services including: Conventional nCounter analysis to determine RNA abundance, GeoMx Digital Spatial Profiling platform to determine protein and RNA abundance, CosMx Spatial Molecular Imaging platform for single cell spatial analysis of RNA and protein. | spatial transcriptomic, targeted proteomics, determine RNA abundance, determine protein abundance, single cell spatial analysis of RNA and protein | has parent organization: Mayo Clinic Florida; Florida; USA | Open | SCR_026548 | 2026-08-14 09:29:48 | 1 | ||||||||||
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Synbio Technologies Resource Report Resource Website 1+ mentions |
Synbio Technologies (RRID:SCR_026374) | service resource, commercial organization | DNA synthesis company provides comprehensive services including gene synthesis, protein expression, gene editing, etc., supporting one-stop solutions for global users. | DNA synthesis, gene synthesis, protein expression, gene editing, | SCR_026374 | 2026-08-14 09:29:47 | 4 | ||||||||||||
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PVGA Resource Report Resource Website 1+ mentions |
PVGA (RRID:SCR_026410) | source code, software application, software resource | Software tool as virus-focused assembler that does both assembly and polishing into unified workflow. Viral genome assembler enables detection of subtle genomic variations that can significantly impact viral function and pathogenicity. | viral genome assembler, assembly and polishing, unified workflow, detection of subtle genomic variations, viral function and pathogenicity, | Free, Available for download, Freely available | SCR_026410 | 2026-08-14 09:29:27 | 1 | |||||||||||
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MeTPeak Resource Report Resource Website 10+ mentions |
MeTPeak (RRID:SCR_026533) | software toolkit, source code, software resource | Software package for finding the location of m6A sites in MeRIP-seq data. | finding location of m6A sites, MeRIP-seq data | NCI P30CA54174; NCI U54 CA113001; NIGMS R01 GM113245; Natural Science Foundation of China ; NSF |
PMID:27307641 | Free, Available for download, Freely available | SCR_026533 | 2026-08-14 09:29:48 | 11 |
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