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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ClipKIT Resource Report Resource Website 10+ mentions |
ClipKIT (RRID:SCR_026411) | source code, software application, software resource | Software fast and flexible alignment trimming tool that keeps phylogenetically informative sites and removes others. Multiple sequence alignment-trimming algorithm for accurate phylogenomic inference. | multiple sequence, alignment trimming, accurate phylogenomic inference, | Howard Hughes Medical Institute ; National Science Foundation ; Guggenheim Foundation ; Burroughs Wellcome Fund ; NIAID 1R56AI146096; Zhejiang University ; Fundamental Research Funds for the Central Universities |
PMID:33264284 | Free, Available for download, Freely available | SCR_026411 | 2026-08-14 09:29:16 | 49 | |||||||||
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Seattle Childrens Research Institute Behavioral Phenotyping Core Facility Resource Report Resource Website 1+ mentions |
Seattle Childrens Research Institute Behavioral Phenotyping Core Facility (RRID:SCR_026371) | BPC | service resource, access service resource, core facility | Core dedicated to the protocol driven collection, analysis, and reporting of behavioral data using a blend of classic and innovative assays. Supports neuroscience, psychology, pharmacology, genetics, cancer, and development by providing advanced tools and expertise for the precise measurement and interpretation of behavior. | ABRF, precise measurement, interpretation of behavior, collection, analysis, reporting, behavioral data, |
is listed by: ABRF CoreMarketplace has parent organization: Seattle Childrens Research Institute; Washington; USA |
ABRF_3036 | https://coremarketplace.org/?FacilityID=3036&citation=1 | SCR_026371 | , Seattle Childrens Research Institute Behavioral Phenotyping Core, Behavioral Phenotyping Core | 2026-08-14 09:29:26 | 1 | |||||||
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Attune Resource Report Resource Website 1+ mentions |
Attune (RRID:SCR_026494) | source code, software application, software resource | Software framework for integrating gene expression and chromatin accessibility, enabling the inference of regulatory mechanisms and the prediction of gene expression from cross-modal data. Repository contains code and tutorials for the following tasks: multimodal pretraining, cross-modal prediction, inferring regulatory network and potential analysis. | code and tutorials, multimodal pretraining, cross-modal prediction, inferring regulatory network and potential analysis, | Free, Available for download, Freely available | SCR_026494 | 2026-08-14 09:29:48 | 1 | |||||||||||
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tibble Resource Report Resource Website 1+ mentions |
tibble (RRID:SCR_026493) | software toolkit, source code, software resource | Software package for modern re-imagining of data frame. Provides 'tbl_df' class with stricter checking and better formatting than traditional data frame. | modern re-imagining of data frame, modern data frame, data frame, | Free, Available for download, Freely available | https://github.com/tidyverse/tibble | SCR_026493 | 2026-08-14 09:29:17 | 7 | ||||||||||
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University of Kentucky Light Microscopy Core Facility Resource Report Resource Website 1+ mentions |
University of Kentucky Light Microscopy Core Facility (RRID:SCR_026405) | service resource, access service resource, core facility | Core facility offers fluorescence, confocal, super resolution, multi-photon, laser capture and atomic force microscopy. Provides central preparatory laboratory and high-end computer workstations for data analysis and image processing. Technical support ranges from investigator training on instrumentation, allowing independent use, to complete processing of samples and final imaging by facility staff. The facility is GRP accredited, undergoes annual compliance checks and provides extensive standard operating procedures for all instrumentation. | fluorescence, confocal, super resolution, multi-photon, laser capture, atomic force, microscopy, data analysis, image processing, |
is listed by: ABRF CoreMarketplace has parent organization: University of Kentucky; Kentucky; USA |
ABRF_3057 | https://coremarketplace.org/?FacilityID=3057&citation=1 | SCR_026405 | 2026-08-14 09:29:47 | 8 | |||||||||
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University of Texas Southwestern Medical Center Dallas Metabolic Phenotyping Core Facility Resource Report Resource Website 1+ mentions |
University of Texas Southwestern Medical Center Dallas Metabolic Phenotyping Core Facility (RRID:SCR_026404) | service resource, access service resource, core facility | Academic core facility provides analytical and phenotypical measures to the scientific community. Provides services related to metabolic disorders (diabetes and obesity), cancer, aging neurological disorders, etc. Provides letters of support for grant proposals and research applications. | ABRF, analytical and phenotypical services, metabolic disorders, |
is listed by: ABRF CoreMarketplace has parent organization: University of Texas Southwestern Medical Center; Texas; USA |
Open | ABRF_3056 | https://coremarketplace.org/?FacilityID=3056&citation=1 | SCR_026404 | , UTSW Metabolic Phenotyping Core, University of Texas Southwestern Medical Center Dallas Metabolic Phenotyping Core | 2026-08-14 09:29:16 | 1 | |||||||
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SpheroidSegDeDeb Resource Report Resource Website 1+ mentions |
SpheroidSegDeDeb (RRID:SCR_026409) | software application, software resource | Software minimal tool for segmentation of irradiated tumor spheroids using optimized U-Net. | segmentation of irradiated tumor spheroids, segmentation, irradiated tumor spheroids, tumor spheroids, | Free, Available for download, Freely available, | SCR_026409 | 2026-08-14 09:29:47 | 1 | |||||||||||
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Penn State Institute of Computational and Data Sciences Roar Core Facility Resource Report Resource Website 10+ mentions |
Penn State Institute of Computational and Data Sciences Roar Core Facility (RRID:SCR_026424) | service resource, access service resource, core facility, computational service resource | Provides advanced cyberinfrastructure resources including large scale compute and data storage. to the Penn State University research community under the operation of the Institute of Computational and Data Sciences | High Performance Computing and Collaboration, cyberinfrastructure, data storage, | has parent organization: Pennsylvania State University | Restricted | https://icds.psu.edu/ | SCR_026424 | Roar Core Facility | 2026-08-14 09:29:27 | 15 | ||||||||
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Northwestern University NUANCE SPID Core Facility Resource Report Resource Website 1+ mentions |
Northwestern University NUANCE SPID Core Facility (RRID:SCR_026380) | service resource, access service resource, core facility | SPID provides imaging instrumentation and support facilities for atomic to molecular imaging. Supports broad range of nanoscale science and technology characterization needs at nanoscale by providing resources coupled with expert staff. Research at SPID encompasses physical and chemical sciences, engineering and life sciences, and has a strong inter-disciplinary emphasis. | ABRF, imaging instrumentation and support, atomic to molecular imaging, nanoscale science, technology characterization, physical and chemical sciences, engineering, life sciences, |
is listed by: ABRF CoreMarketplace has parent organization: Northwestern University; Illinois; USA |
Open | ABRF_330 | https://coremarketplace.org/?FacilityID=330&citation=1 | SCR_026380 | 2026-08-14 09:29:15 | 2 | ||||||||
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Conos Resource Report Resource Website 1+ mentions |
Conos (RRID:SCR_026381) | software toolkit, source code, software resource | Software R package for joint analysis of multiple single-cell RNA-seq datasets. Used to wire together large collections of single-cell RNA-seq datasets, which allows for both identification of recurrent cell clusters and propagation of information between datasets in multi-sample or atlas-scale collections. | joint analysis of multiple single-cell RNA-seq datasets, multiple single-cell RNA-seq datasets, identification of recurrent cell clusters, propagation of information between datasets, multi-sample, atlas-scale collections, | NHLBI R01HL131768; NSF ; Zimin Foundation |
DOI:10.1038/s41592-019-0466-z | Free, Available for download, Freely available | SCR_026381 | 2026-08-14 09:29:47 | 9 | |||||||||
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University of Kentucky Magnetic Resonance Imaging and Spectroscopy Center Core Facility Resource Report Resource Website 1+ mentions |
University of Kentucky Magnetic Resonance Imaging and Spectroscopy Center Core Facility (RRID:SCR_026383) | service resource, access service resource, core facility | Service and consultation core supporting basic and clinical research. Provides advanced 3T Siemens PRISMA scanner with high performance gradients, echo-planar whole body imaging and hydrogen spectroscopic capabilities for both human and animal studies. For dedicated animal studies Bruker/Siemens 7T MR scanner has been installed. | Magnetic Resonance Imaging, spectroscopy, | has parent organization: University of Kentucky; Kentucky; USA | Restricted | SCR_026383 | Magnetic Resonance Imaging and Spectroscopy Center (MRISC) | 2026-08-14 09:29:15 | 2 | |||||||||
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PISAD Resource Report Resource Website 1+ mentions |
PISAD (RRID:SCR_026597) | source code, software application, software resource | Software reference-free intraspecies sample anomalies detetion tool based on k-mer counting. | reference-free, intraspecies, sample anomalies detetion, | Free, Available for download, Freely available | SCR_026597 | 2026-08-14 09:29:48 | 1 | |||||||||||
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DeepAnnotation Resource Report Resource Website 1+ mentions |
DeepAnnotation (RRID:SCR_026630) | software toolkit, source code, software resource | Software Python package to perform genomic selection. Predicts phenotypes from comprehensive multi-omics functional annotations with interpretable deep learning framework. Novel interpretable DL-based genomic prediction model that integrates comprehensive species- and tissue-level transcriptional regulatory functional annotations to predict phenotypes. | Predict phenotype, perform genomic selection, multi-omics functional annotations, | Free, Available for download, Freely available | https://doi.org/10.5281/zenodo.8410693 | SCR_026630 | 2026-08-14 09:29:20 | 1 | ||||||||||
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Texas A and M University System Genomics and Bioinformatics Service Core Facility Resource Report Resource Website 1+ mentions |
Texas A and M University System Genomics and Bioinformatics Service Core Facility (RRID:SCR_026632) | service resource, access service resource, core facility | Core provides services including Sequencing, Library preparation, Bioinformatics Analysis and Processing. Experienced staff provide expertise to users. | ABRF | ABRF_3092 | https://coremarketplace.org/?FacilityID=3092&citation=1 | SCR_026632 | , Genomics & Bioinformatics Service, Texas A&M University System Genomics & Bioinformatics Service | 2026-08-14 09:29:30 | 4 | |||||||||
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Fred Hutchinson Cancer Center Prevention Center Shared Resource Core Facility Resource Report Resource Website 1+ mentions |
Fred Hutchinson Cancer Center Prevention Center Shared Resource Core Facility (RRID:SCR_026631) | service resource, access service resource, core facility | Provides services in the conduct of exercise interventions, nutrition interventions, or prevention-based clinical interventions. Facility offers well-trained, specialized staff and inviting space for study participants to participate in population-based research. | exercise interventions, nutrition interventions, prevention-based clinical interventions, NACCSR |
is listed by: ABRF CoreMarketplace is listed by: Fred Hutchinson Cancer Center Shared Resources has parent organization: Fred Hutchinson Cancer Center |
ABRF_3110 | https://coremarketplace.org/RRID:SCR_026631/?citation=1 | SCR_026631 | , Fred Hutch Cancer Center Prevention Center Shared Resource | 2026-08-14 09:29:48 | 2 | ||||||||
|
modeltest Resource Report Resource Website 100+ mentions |
modeltest (RRID:SCR_026633) | software application, software resource | Software tool for selecting the best-fit model of evolution for DNA and protein alignments. Used for selection of DNA and Protein evolutionary models. | selecting the best-fit model of evolution, DNA and protein alignments, selection of DNA and Protein evolutionary models, | Ministry of Economy and Competitiveness of Spain ; FEDER funds of the EU ; Galician Government ; Klaus Tschira Foundation |
PMID:31432070 | Free, Available for download, Freely available | SCR_026633 | ModelTest-NG | 2026-08-14 09:29:20 | 160 | ||||||||
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Augusta University Georgia Cancer Center Immune Monitoring Shared Resource Core Facility Resource Report Resource Website 1+ mentions |
Augusta University Georgia Cancer Center Immune Monitoring Shared Resource Core Facility (RRID:SCR_026590) | service resource, access service resource, core facility | Core provides services in Assay Development, Assays Experimental Design, Immune Monitoring, Cytokine Assays, ELISA, multiplex Flow based and Luminex based Bead Arrays, Project Based Flow Cytometry and Data Analysis. | ABRF, Assay Development, Assays Experimental Design, Immune Monitoring, Cytokine Assays, ELISA, multiplex Flow based and Luminex based Bead Arrays, |
is listed by: ABRF CoreMarketplace has parent organization: Augusta University; Georgia; USA |
ABRF_3096 | https://coremarketplace.org/?FacilityID=3096&citation=1 | SCR_026590 | Immune Monitoring, , Augusta University Georgia Cancer Center Immune Monitoring Shared Resource | 2026-08-14 09:29:29 | 3 | ||||||||
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CreateZoom Resource Report Resource Website 1+ mentions |
CreateZoom (RRID:SCR_026625) | source code, software application, software resource | Backend application to process high-resolution histology images to DeepZoomImage format, made of smaller tiles, for use in the QUINT Workflow. | CreateZoom API app, DeepZoomImage format, process and create high-resolution histology images, QUINT Workflow, handle pyramids and tiles, | is related to: SeriesZoom | Free, Available for download, Freely available | SCR_026625 | 2026-08-14 09:29:29 | 1 | ||||||||||
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PUMATAC Resource Report Resource Website 1+ mentions |
PUMATAC (RRID:SCR_026624) | software toolkit, source code, software resource | Software pipeline for universal mapping of ATAC-seq. | universal mapping of ATAC-seq, | Free, Available for download, Freely available | https://zenodo.org/records/7924251 | SCR_026624 | Pipeline for Universal Mapping of ATAC-seq | 2026-08-14 09:29:48 | 1 | |||||||||
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scPrinter Resource Report Resource Website 1+ mentions |
scPrinter (RRID:SCR_026644) | data processing software, software application, data analysis software, source code, software resource | Softwre framework for multi-scale footprinting analysis of single-cell ATAC-seq data. Designed to identify and visualize regulatory elements that drive cell-type-specific gene expression programs through footprinting. Uses deep learning model to predict activity of transcription factors from single-cell ATAC-seq data. Provides suite of visualization tools to explore calculated multi-scale footprints. | multi-scale footprinting analysis, single-cell ATAC-seq data, identify and visualize regulatory elements, predict activity of transcription factors, | PMID:39843737 | Free, Available for download, Freely available | SCR_026644 | 2026-08-14 09:29:20 | 3 |
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