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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ArUco Resource Report Resource Website 10+ mentions |
ArUco (RRID:SCR_026572) | source code, software resource, instrument resource | Automated rodent behavioral scoring system, complete with 3D design files and code/software. System monitors behavioral engagement using open-source software. 3D design files and necessary software has been made available, as well as code that can be used for data analysis. | OpenBehavior, Aruco marker based tracking, pose estimation, rodent behavioral session, | is listed by: OpenBehavior | NINDS R01NS110823; United States (US) Department of Veterans Affairs Rehabilitation Research and Development Service ; University of Texas at Dallas |
DOI:10.1523/ENEURO.0500-23.2024 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/aruco-markers/ | SCR_026572 | Augmented Reality University of Cordoba, Aruco | 2026-08-14 09:29:48 | 16 | ||||||
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HCP Pipelines Resource Report Resource Website 10+ mentions |
HCP Pipelines (RRID:SCR_026575) | software toolkit, image processing software, data processing software, software application, software resource | Software package as set of tools, primarily shell scripts, for processing multi-modal, high-quality MRI images for the Human Connectome Project. Minimal preprocessing pipelines for structural, functional, and diffusion MRI that were developed by the HCP to accomplish many low level tasks, including spatial artifact/distortion removal, surface generation, cross-modal registration, and alignment to standard space. | Minimal preprocessing pipelines, Human Connectome Project, MRI images processing, MRI images, | NIMH MH091657; NIH Blueprint for Neuroscience Research ; NIMH F30 MH097312; NIMH ROI MH60974; NCRR U24 RR021382; NIBIB R01EB006758; NIA R01AG008122; NINDS R01 NS052585; NINDS R21NS072652; NINDS R01NS070963 |
PMID:23668970 | Free, Available for download, Freely available | https://www.humanconnectome.org/software/hcp-mr-pipelines | SCR_026575 | Human Connectome Project Pipelines | 2026-08-14 09:29:19 | 36 | |||||||
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University of Michigan Medical School BRCF Vector Core Facility Resource Report Resource Website 1+ mentions |
University of Michigan Medical School BRCF Vector Core Facility (RRID:SCR_026696) | service resource, access service resource, core facility | Vector Core produces gene transfer vectors that facilitate transfer of specific genes into either normal or aberrant cells. Provides intellectual and technical advice to researchers regarding the optimal use of these systems. | ABRF, gene transfer vectors, produce gene transfer vectors, |
is listed by: ABRF CoreMarketplace has parent organization: University of Michigan; Ann Arbor; USA |
ABRF_3131 | https://coremarketplace.org/?FacilityID=3131&citation=1 | SCR_026696 | University of Michigan BRCF Vector Core | 2026-08-14 09:29:20 | 2 | ||||||||
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University of Texas MD Anderson Cancer Center Advanced Microscopy Core Facility Resource Report Resource Website 1+ mentions |
University of Texas MD Anderson Cancer Center Advanced Microscopy Core Facility (RRID:SCR_026611) | service resource, access service resource, core facility | Core provides microscopy services to departments at MD Anderson in high resolution and multispectral fluorescence microscopy for users from divisions including Basic Research, Cancer Medicine, Diagnostic Imaging, Surgery, Internal Medicine Pediatrics and Radiation Oncology, among others. Offers microscopy resources and expertise in fluorescence imaging to spatially and dynamically assess cells, tissues and their requisite contents across scales. | ABRF, microscopy services, multispectral fluorescence microscopy, optical imaging, fluorescence imaging, | has parent organization: University of Texas MD Anderson Cancer Center | Open | ABRF_3100 | https://coremarketplace.org/?FacilityID=3100&citation=1 | SCR_026611 | University of Texas MD Anderson Cancer Center Advanced Microscopy Core, MD Anderson Cancer Center Advanced Microscopy Core, Advanced Microscopy Core | 2026-08-14 09:29:29 | 1 | |||||||
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EndoMap Resource Report Resource Website 1+ mentions |
EndoMap (RRID:SCR_026690) | database, data or information resource | Structural interactome viewer. Interactive database of endosomal protein-protein interactions identified by cross-linking mass spectrometry and modeled by AlphaFold multimer. Structural protein interactome of human early endosomes. | Structural protein interactome, structural interactome viewer, endosomal protein-protein interactions, human early endosomes, | Aligning Science Across Parkinson ; NINDS R01NS110395; NIGMS RO1 GM132129; Michael J Fox Foundation |
DOI:10.1101/2025.02.07.636106 | Free, Freely available | SCR_026690 | EndoMAP.v1 | 2026-08-14 09:29:49 | 2 | ||||||||
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UCI Machine Learning Repository Resource Report Resource Website 10+ mentions |
UCI Machine Learning Repository (RRID:SCR_026571) | storage service resource, service resource, data repository | Collection of databases, domain theories, and data generators that are used by machine learning community for empirical analysis of machine learning algorithms. Datasets approved to be in the repository will be assigned Digital Object Identifier (DOI) if they do not already possess one. Datasets will be licensed under a Creative Commons Attribution 4.0 International license (CC BY 4.0) which allows for the sharing and adaptation of the datasets for any purpose, provided that the appropriate credit is given | Digital Object Identifier, dataset, databases, domain theories, data generators, empirical analysis of machine learning algorithms, | has parent organization: University of California at Irvine; California; USA | Free, Freely available | r3d100010960 | https://www.re3data.org/repository/r3d100010960, https://doi.org/10.17616/R3T91Q | SCR_026571 | UC Irvine Machine Learning Repository | 2026-08-14 09:29:18 | 25 | |||||||
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Mutect2 Resource Report Resource Website 1000+ mentions |
Mutect2 (RRID:SCR_026692) | software application, software resource | Software tool to call somatic short mutations via local assembly of haplotypes. Somatic variant caller that uses local assembly and realignment to detect SNVs and indels. | Somatic variant caller, call somatic short mutations, detect SNVs and indels, | DOI:10.1101/861054 | SCR_026692 | 2026-08-14 09:29:20 | 1271 | |||||||||||
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University of Michigan Medical School BRCF Proteomics Resource Core Facility Resource Report Resource Website 1+ mentions |
University of Michigan Medical School BRCF Proteomics Resource Core Facility (RRID:SCR_026723) | service resource, access service resource, core facility | Core is dedicated to protein analysis and applying mass spectrometry-based proteomic approaches to varied biological questions. | ABRF, protein analysis, mass spectrometry |
is listed by: ABRF CoreMarketplace has parent organization: University of Michigan; Ann Arbor; USA |
Restricted | ABRF_3195 | https://www.pathology.med.umich.edu/login, https://coremarketplace.org/RRID:SCR_026723/?citation=1 | SCR_026723 | , University of Michigan Medical School Pathology BRCF Proteomics Resource Core Facility, University of Michigan Medical School Pathology BRCF Proteomics Resource Facility, University of Michigan BRCF Proteomics Resource Facility | 2026-08-14 09:29:31 | 3 | |||||||
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University of Liverpool Centre for Preclinical Imaging Core Facility Resource Report Resource Website 1+ mentions |
University of Liverpool Centre for Preclinical Imaging Core Facility (RRID:SCR_026605) | service resource, access service resource, core facility | Provides access to imaging systems. Offers researchers technologies for multi-modality, non-invasive approaches to imaging on small, live animals, or tissues and organs extracted from animals . Our equipment can be used for pre-clinical models and non-biological samples. | imaging, small animals, live animals, tissues and organs extracted from animals, |
is listed by: ABRF CoreMarketplace has parent organization: University of Liverpool; Liverpool; United Kingdom |
Open | ABRF_3097 | https://coremarketplace.org/?FacilityID=3097&citation=1 | SCR_026605 | , Centre for Pre-Clinical Imaging, Centre for Preclinical Imaging-CPI | 2026-08-14 09:29:29 | 2 | |||||||
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University of Liverpool Shared Research Histology Core Facility Resource Report Resource Website 1+ mentions |
University of Liverpool Shared Research Histology Core Facility (RRID:SCR_026606) | service resource, access service resource, core facility | Facility offers preparation of samples from fresh or fixed tissue through to scanned images. Provides training to prepare and use equipment to embed, section and hand stain tissues as required. Offers three different types of wax for embedding and sectioning as required. Fully equipped for methyl methacrylate and glycol methacrylate embedding and sectioning (including larger samples), freeze microtomy and high throughput slide imaging using our Zeiss Axioscan Z1. | fresh or fixed tissue preparation, scanned images, embedding and sectioning, hand stain tissues, services |
is listed by: ABRF CoreMarketplace has parent organization: University of Liverpool; Liverpool; United Kingdom |
ABRF_3098 | https://coremarketplace.org/?FacilityID=3098&citation=1 | SCR_026606 | University of Liverpool Shared Research Histology Facility | 2026-08-14 09:29:19 | 4 | ||||||||
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SnapATAC2 Resource Report Resource Website 1+ mentions |
SnapATAC2 (RRID:SCR_026622) | software toolkit, source code, software resource | Software Python/Rust package for single-cell epigenomics analysis. | Single-cell epigenomics analysis, | NHGRI U01HG012059; NHGRI UM1HG011585; NIMH RF1MH128838; NIMH UM1MH130994; NIA R24AG073198; NIMH U01MH114828; NIA R56AG069107; NIA U54AG079758; NIMH U01MH121282; NIMH U19MH114831; NEI R01EY031663 |
PMID:38191932 | Free, Available for download, Freely available | SCR_026622 | 2026-08-14 09:29:19 | 4 | |||||||||
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University of California at Irvine Optical Biology Core Facility Resource Report Resource Website 1+ mentions |
University of California at Irvine Optical Biology Core Facility (RRID:SCR_026614) | service resource, access service resource, core facility | Shared resource facility to provide researchers access to resources, including state of the art instrumentation and technical support, to conduct biomedical research. Provides access to light microscopes (confocal, mesoscale lightsheet, and Super Resolution), as well as software for 3D and 4D analysis. | ABRF, light microscopes, confocal, mesoscale lightsheet, Super Resolution, 3D and 4D analysis, | has parent organization: University of California at Irvine; California; USA | SCR_026614 | University of California at Irvine Optical Biology Core | 2026-08-14 09:29:29 | 2 | ||||||||||
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County Health Rankings and Roadmaps Resource Report Resource Website 10+ mentions |
County Health Rankings and Roadmaps (RRID:SCR_026613) | organization portal, project portal, data or information resource, portal | Program of University of Wisconsin Population Health Institute, highlights policies and practices that can help everyone be as healthy as possible. Aims to grow shared understanding of health, equity and power of communities to improve health for all. | Population Health Institute, policies and practices, healthy, health, equity and power, | has parent organization: University of Wisconsin-Madison; Wisconsin; USA | Free, Freely available, | SCR_026613 | 2026-08-14 09:29:48 | 16 | ||||||||||
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University of California at Irvine Genomics Research and Technology Hub Core Facility Resource Report Resource Website 1+ mentions |
University of California at Irvine Genomics Research and Technology Hub Core Facility (RRID:SCR_026615) | service resource, access service resource, core facility | Core provides services ranging from DNA/RNA QC analysis, library construction and sequencing on various platforms. Offers several sequencing platforms from Illumina’s MiSeq and NovaSeq to PacBio’s Sequel II System. | ABRF, DNA/RNA QC analysis, library construction, sequencing, | has parent organization: University of California at Irvine; California; USA | SCR_026615 | , GRT Hub, University of California at Irvine-Genomics Research and Technology Hub, UCI GRT Hub, UCI Genomics Research and Technology Hub | 2026-08-14 09:29:19 | 4 | ||||||||||
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BIGapp Resource Report Resource Website 1+ mentions |
BIGapp (RRID:SCR_026676) | BIGapp | source code, web application, software resource | Species-agnostic web-based application for processing genotypic data in no-code RShiny user-friendly interface. Allows users without coding experience to process genetic data in all genome ploidy ranges and for multiallelic data, starting from number of input formats (including VCF). Also allows to perform downstream QC analyses (e.g., PCA) and run genomic analysis (e.g., Linkage mapping, QTL analysis, genome-wide association studies (GWAS), and genomic selection (GS). | processing genotypic data in no-code RShiny, process genetic data, genome ploidy ranges, multiallelic data, | USDA-ARS 8062-21000-043-004-A; USDA-ARS 8062-21000-052-002-A; USDA-ARS 8062-21000-052-003-A |
Free, Available for download, Freely available | https://github.com/Breeding-Insight | SCR_026676 | Breeding Insight Genomics App | 2026-08-14 09:29:49 | 1 | |||||||
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bi-web Resource Report Resource Website 1+ mentions |
bi-web (RRID:SCR_026678) | software application, software resource, source code | Breeding-Insight/bi-web development. | Breeding-Insight, bi-web development, | Free, Available for download, Freely available | SCR_026678 | breeding insight-web | 2026-08-14 09:29:30 | 1 | ||||||||||
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tfmodisco-lite Resource Report Resource Website 10+ mentions |
tfmodisco-lite (RRID:SCR_026709) | software toolkit, source code, software resource | Software tool as lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments. Rewrite of the original TF-MoDISCo code. | lite implementation of tfmodisco, motif discovery algorithm, genomics experiments | is related to: TF-Modisco | Free, Available for download, Freely available | SCR_026709 | 2026-08-14 09:29:31 | 13 | ||||||||||
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SCENIC+ Resource Report Resource Website 10+ mentions |
SCENIC+ (RRID:SCR_026702) | software toolkit, source code, software resource | Software Python package to build gene regulatory networks using combined or separate single-cell gene expression and single-cell chromatin accessibility (scATAC-seq) data. Used for inferring and analyzing enhancer-driven gene regulatory networks using single-cell multiomic data. | build gene regulatory networks, inferring and analyzing enhancer-driven gene regulatory networks, single-cell multiomic data, | Foundation Against Cancer ; ERC Consolidator Grant ; ERC Proof of Concept |
PMID:37443338 | Free, Available for download, Freely available | SCR_026702 | 2026-08-14 09:29:21 | 25 | |||||||||
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Augusta University Chemical and Biomolecular Analysis Core Facility Resource Report Resource Website 1+ mentions |
Augusta University Chemical and Biomolecular Analysis Core Facility (RRID:SCR_026668) | service resource, access service resource, core facility | Core focused on metabolomics, lipidomics, medicinal chemistry, and small molecule analysis. Offers services, expertise, and collaboration for the research community. Instrumentation includes high field nuclear magnetic resonance (NMR), liquid chromatography–mass spectrometry (LC-MS), gas chromatography-mass spectrometry (GC-MS), high-performance liquid chromatography (HPLC), circular dichroism spectrometer (CD), inductively coupled plasma optical emission spectrometry (ICP-OES), and fluorimeter. Consulting is available to assist with experimental design and data interpretation. | metabolomics, lipidomics, medicinal chemistry, small molecule, experimental design, data interpretation, analysis services, |
is listed by: ABRF CoreMarketplace has parent organization: Augusta University; Georgia; USA |
Open | ABRF_3118 | https://coremarketplace.org/?FacilityID=3118&citation=1 | SCR_026668 | 2026-08-14 09:29:49 | 4 | ||||||||
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FARDEEP Resource Report Resource Website 1+ mentions |
FARDEEP (RRID:SCR_026704) | FARDEEP | source code, software application, software resource | Software R tool for enumerating immune cell subsets from whole tumor tissue samples. Utilizes adaptive least trimmed square to automatically detect and remove outliers before estimating cell compositions. | enumerating immune cell subsets, whole tumor tissue samples, estimating cell compositions, | NIDCR R03 DE027399; NIDCR R01 DE026728; NIDCR R00 DE024173; NIDCR F31 DE028740; NSF ; Michigan State University STEM Gateway Fellowship ; University of Michigan Rogel Cancer Center Research Grant |
PMID:31059559 | Free, Available for download, Freely available | SCR_026704 | Fast And Robust DEconvolution of Expression Profiles | 2026-08-14 09:29:49 | 1 |
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