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https://www.ucl.ac.uk/pharmacy/about/facilities/sop-nuclear-magnetic-resonance-nmr-facility

Core designed for range of solution-state pharmaceutical and biological chemistry applications. Facility is equipped with 600 MHz magnet equipped with high-throughput autosampler and QCI-F cryoprobe optimised for 1H and 19F sensitivity, and 400 MHz magnet dedicated to routine chemistry applications. Facility is also operating ligand-observed 19F-fragment library screening service for drug discovery.

Proper citation: University College London School of Pharmacy Nuclear Magnetic Resonance Core Facility (RRID:SCR_027123) Copy   

•   Source: SciCrunch Registry

https://www.bioconductor.org/packages/devel/bioc/html/decoupleR.html

Software R package to infer biological activities from omics data using collection of methods.

Proper citation: decoupleR (RRID:SCR_027127) Copy   

•   Source: SciCrunch Registry

https://www.iqm.unicamp.br/institucional/infraestrutura/cemuiq/lirmn

Institutional laboratory of Nuclear Magnetic Resonance (NMR) of the Institute of Chemistry of UNICAMP.The Institutional Nuclear Magnetic Resonance Laboratory has 6 NMR spectrometers, two for solids and four for solution probes, with the possibility of analyzing different nuclei.

Proper citation: State University of Campinas Institute of Chemistry Nuclear Magnetic Resonance Laboratory LIRMN-IQ Core Facility (RRID:SCR_027247) Copy   

•   Source: SciCrunch Registry

https://opendata.cbs.nl/#/CBS/nl/dataset/85457NED

Database of Statistics Netherlands (CBS). Contains lifestyle data of Dutch population living in private households. The numbers can be broken down by various personal characteristics.

Proper citation: CBS StatLine - Lifestyle (RRID:SCR_027121) Copy   

•   Source: SciCrunch Registry

https://github.com/jMotif/jmotif-R

Software R package implements time series z-normalization, SAX, HOT-SAX, VSM, SAX-VSM, RePair, and RRA algorithms facilitating time series motif (i.e., recurrent pattern), discord (i.e., anomaly), and characteristic pattern discovery along with interpretable time series classification.

Proper citation: jmotif (RRID:SCR_027120) Copy   

•   Source: SciCrunch Registry

https://github.com/KrishnaswamyLab/PHATE

Software tool for visualizing high dimensional data using novel conceptual framework for learning and visualizing manifold to preserve both local and global distances.

Proper citation: PHATE (RRID:SCR_027119) Copy   

•   Source: SciCrunch Registry

https://github.com/mskilab-org/JaBbA

Software tool to infer junction-balanced genome graphs with high fidelity. Builds genome graph based on junctions and read depth from whole genome sequencing, inferring optimal copy numbers for both vertices (DNA segments) and edges (bonds between segments).

Proper citation: JaBba (RRID:SCR_027134) Copy   

•   Source: SciCrunch Registry

https://bitbucket.org/anthakki/prism/src/master/

Software statistical framework that allows simultaneous extraction of tumor sample composition and cell type and sample specific whole-transcriptome profiles from individual bulk RNA-seq samples.

Proper citation: PRISM - Poisson RNA-profile Identification in Scaled Mixtures (RRID:SCR_027136) Copy   

•   Source: SciCrunch Registry

http://augusta.edu/research/core/bioinformatics.php

Core provides bioinformatics support for genomics, transcriptomics, epigenomics, and other high-throughput data. Offers data analysis, pipeline development, and consultation services to researchers across disciplines, with focus on reproducibility, scalability, and collaboration.

Proper citation: Augusta University Centre for Biotechnology and Genomic Medicine Bioinformatics Core Facility (RRID:SCR_027092) Copy   

•   Source: SciCrunch Registry

https://github.com/hartwigmedical/hmftools/tree/master/cobalt

Software tool to determine read depth ratios of supplied tumor and reference genomes.

Proper citation: COBALT (RRID:SCR_027132) Copy   

•   Source: SciCrunch Registry

https://github.com/yichun10/BioCDQA.git

Software retrieval-augmented knowledge mining method with deep thinking LLMs for biomedical research and clinical support. Cross-document question answering dataset addressing current QA limitations, and features Progressive Retrieval-Augmented Reasoning framework that combines advanced retrieval-generation techniques with self-reflection mechanisms and deep-thinking large language models to enhance answer accuracy and contextual relevance.Used to evaluate latent knowledge retrieval and multi-hop reasoning capabilities.

Proper citation: BioCDQA (RRID:SCR_027068) Copy   

•   Source: SciCrunch Registry

https://www.birmingham.ac.uk/university/colleges/mds/facilities/intravital-microscopy-suite

Imaging facility for intravital microscopy. Facility equipment includes widefield, confocal, and multiphoton microscopes. Additional tools, such as laser ablation systems, allow us to probe vascular events such as thrombosis in fine detail. We also have tools for measurement of vascular perfusion, such as full-field laser speckle and laser doppler.

Proper citation: University of Birmingham Intravital Microscopy Core Facility (RRID:SCR_027189) Copy   

•   Source: SciCrunch Registry

https://www.rdocumentation.org/packages/SeuratObject/versions/5.0.2

Software R package defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users.

Proper citation: SeuratObject (RRID:SCR_027221) Copy   

•   Source: SciCrunch Registry

https://github.com/qiankunzizairen/PanGIA

Software tool for predicting ncRNA-disease associations. Used for identifying association between ncRNAs and diseases.

Proper citation: PanGIA (RRID:SCR_027069) Copy   

•   Source: SciCrunch Registry

https://github.com/NBISweden/AGAT

Software toolkit containing lots of useful tools for genomics analyses. Used to check, fix, pad missing information (features/attributes) of any kind of GTF and GFF to create complete, sorted and standardised gff3 format.

Proper citation: Another Gtf/Gff Analysis Toolkit (RRID:SCR_027223) Copy   

•   Source: SciCrunch Registry

https://www.ethotrack.com/fr/

Video analysis software designed for the study of animal behavior.

Proper citation: Ethotrack (RRID:SCR_027105) Copy   

•   Source: SciCrunch Registry

https://github.com/gillislab/MetaMarkers

Software R package to efficiently compute robust markers across single-cell datasets. Robust marker signatures from single-cell data.

Proper citation: MetaMarkers (RRID:SCR_027104) Copy   

•   Source: SciCrunch Registry

https://www.birmingham.ac.uk/university/colleges/mds/facilities/protein-expression-facility

Core, within College of Medicine and Health, offers expert support for all aspects of recombinant protein production. Using range of expression systems, produces proteins suitable for diverse downstream applications.

Proper citation: University of Birmingham Protein Expression Core Facility (RRID:SCR_027106) Copy   

•   Source: SciCrunch Registry

https://knowledge.brain-map.org/

Comprehensive multi-species platform for neuroscience teams to understand brain cells and anatomy. Brain Knowledge Platform includes catalog of relevant data and projects, as well as visualization tools for understanding brain cell types.

Proper citation: Brain Knowledge Platform (RRID:SCR_027180) Copy   

•   Source: SciCrunch Registry

https://www.cellularimaging.org/about

Provides access to imaging technology. Offers combination of both commercial platforms and not-yet commercialized technologies that enable innovative research centered around structural and functional imaging. Optical microscopy and image analysis platform.

Proper citation: Columbia University Zuckerman Institute Cellular Imaging Core Facility (RRID:SCR_027061) Copy   

•   Source: SciCrunch Registry