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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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University College London School of Pharmacy Nuclear Magnetic Resonance Core Facility Resource Report Resource Website 1+ mentions |
University College London School of Pharmacy Nuclear Magnetic Resonance Core Facility (RRID:SCR_027123) | service resource, access service resource, core facility | Core designed for range of solution-state pharmaceutical and biological chemistry applications. Facility is equipped with 600 MHz magnet equipped with high-throughput autosampler and QCI-F cryoprobe optimised for 1H and 19F sensitivity, and 400 MHz magnet dedicated to routine chemistry applications. Facility is also operating ligand-observed 19F-fragment library screening service for drug discovery. | ABRF, Nuclear Magnetic Resonance, 600 MHz magnet, 400 MHz magnet, pharmaceutical and biological chemistry applications, |
is listed by: ABRF CoreMarketplace has parent organization: University College London; London; United Kingdom |
ABRF_3277 | https://coremarketplace.org/?FacilityID=3277 | SCR_027123 | , University College London School of Pharmacy NMR Core Facility, UCL School of Pharmacy Nuclear Magnetic Resonance (NMR) Facility, UCL School of Pharmacy NMR Facility | 2026-08-14 09:29:29 | 6 | ||||||||
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decoupleR Resource Report Resource Website 10+ mentions |
decoupleR (RRID:SCR_027127) | software toolkit, source code, software resource | Software R package to infer biological activities from omics data using collection of methods. | infer biological activities from omics data, omics data, biological activities, | European Union Horizon 2020 | PMID:36699385 | Free, Available for download, Freely available | https://github.com/saezlab/decoupleR/?tab=readme-ov-file | SCR_027127 | 2026-08-14 09:29:52 | 11 | ||||||||
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State University of Campinas Institute of Chemistry Nuclear Magnetic Resonance Laboratory LIRMN-IQ Core Facility Resource Report Resource Website 1+ mentions |
State University of Campinas Institute of Chemistry Nuclear Magnetic Resonance Laboratory LIRMN-IQ Core Facility (RRID:SCR_027247) | service resource, access service resource, core facility | Institutional laboratory of Nuclear Magnetic Resonance (NMR) of the Institute of Chemistry of UNICAMP.The Institutional Nuclear Magnetic Resonance Laboratory has 6 NMR spectrometers, two for solids and four for solution probes, with the possibility of analyzing different nuclei. | ABRF, NMR spectrometers, solids, solution, probes, analyzing different nuclei, |
is listed by: ABRF CoreMarketplace has parent organization: State University of Campinas; São Paulo; Brazil |
Open | ABRF_4062 | https://coremarketplace.org/?FacilityID=4062&citation=1 | SCR_027247 | LIRMN-IQ, Universidade Estadual de Campinas (UNICAMP) LIRMN-IQ | 2026-08-14 09:29:39 | 7 | |||||||
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CBS StatLine - Lifestyle Resource Report Resource Website 1+ mentions |
CBS StatLine - Lifestyle (RRID:SCR_027121) | database, data or information resource | Database of Statistics Netherlands (CBS). Contains lifestyle data of Dutch population living in private households. The numbers can be broken down by various personal characteristics. | Statistics Netherlands, lifestyle data, Dutch population, population living in private households, personal characteristics, | Free, Freely available, | SCR_027121 | 2026-08-14 09:29:37 | 1 | |||||||||||
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jmotif Resource Report Resource Website 1+ mentions |
jmotif (RRID:SCR_027120) | software toolkit, source code, software resource | Software R package implements time series z-normalization, SAX, HOT-SAX, VSM, SAX-VSM, RePair, and RRA algorithms facilitating time series motif (i.e., recurrent pattern), discord (i.e., anomaly), and characteristic pattern discovery along with interpretable time series classification. | interpretable time series classification, time series motif, discord, characteristic pattern discovery, time series z-normalization, SAX, HOT-SAX, VSM, SAX-VSM, RePair, RRA algorithm, | Free, Available for download, Freely available | SCR_027120 | 2026-08-14 09:29:52 | 1 | |||||||||||
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PHATE Resource Report Resource Website 1+ mentions |
PHATE (RRID:SCR_027119) | data processing software, software application, software resource, source code, data visualization software, 3d visualization software | Software tool for visualizing high dimensional data using novel conceptual framework for learning and visualizing manifold to preserve both local and global distances. | visualizing high dimensional data, high dimensional data, | NICHD F31HD097958; NHGRI 1R01HG008383; NSF ; NIGMS R01GM107092; NIGMS R01GM130847 |
PMID:31796933 | Free, Available for download, Freely available, | SCR_027119 | Potential of Heat-diffusion for Affinity-based Transition Embedding | 2026-08-14 09:29:29 | 5 | ||||||||
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JaBba Resource Report Resource Website 1+ mentions |
JaBba (RRID:SCR_027134) | software application, software resource | Software tool to infer junction-balanced genome graphs with high fidelity. Builds genome graph based on junctions and read depth from whole genome sequencing, inferring optimal copy numbers for both vertices (DNA segments) and edges (bonds between segments). | Builds genome graph, junctions and read depth, infer junction-balanced genome graphs, whole genome sequencing, inferring optimal copy numbers, vertices and edges, DNA segments, bonds between segments, | NCI P01 CA91955; NCI P30 CA015704 |
PMID:33007263 | Free, Available for download, Freely available, | SCR_027134 | Junction Balance Analysis | 2026-08-14 09:29:52 | 1 | ||||||||
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PRISM - Poisson RNA-profile Identification in Scaled Mixtures Resource Report Resource Website 500+ mentions |
PRISM - Poisson RNA-profile Identification in Scaled Mixtures (RRID:SCR_027136) | PRISM | software application, software resource | Software statistical framework that allows simultaneous extraction of tumor sample composition and cell type and sample specific whole-transcriptome profiles from individual bulk RNA-seq samples. | simultaneous extraction of tumor sample composition, cell type, sample specific whole-transcriptome profile, individual bulk RNA-seq samples, | European Union Horizon 2020 ; Academy of Finland ; Finnish Cancer Association |
PMID:33720334 | Free, Available for download, Freely available | SCR_027136 | Poisson RNA-profile Identification in Scaled Mixtures | 2026-08-14 09:29:29 | 783 | |||||||
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Augusta University Centre for Biotechnology and Genomic Medicine Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Augusta University Centre for Biotechnology and Genomic Medicine Bioinformatics Core Facility (RRID:SCR_027092) | service resource, access service resource, core facility | Core provides bioinformatics support for genomics, transcriptomics, epigenomics, and other high-throughput data. Offers data analysis, pipeline development, and consultation services to researchers across disciplines, with focus on reproducibility, scalability, and collaboration. | Bioinformatics, genomics, transcriptomics, proteomics, high-throughput data, data analysis, consultation services, training |
is listed by: ABRF CoreMarketplace has parent organization: Augusta University; Georgia; USA |
ABRF_3268 | https://coremarketplace.org/RRID:SCR_027092/?citation=1 | SCR_027092 | CBGM Bioinformatics Core, , Augusta University Centre for Biotechnology and Genomic Medicine Bioinformatics Core | 2026-08-14 09:29:37 | 1 | ||||||||
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COBALT Resource Report Resource Website 10+ mentions |
COBALT (RRID:SCR_027132) | software application, software resource | Software tool to determine read depth ratios of supplied tumor and reference genomes. | determine read depth ratios, supplied tumor, reference genomes, | Free, Available for download, Freely available, | SCR_027132 | COunt BAm Lines T | 2026-08-14 09:29:38 | 15 | ||||||||||
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BioCDQA Resource Report Resource Website 1+ mentions |
BioCDQA (RRID:SCR_027068) | source code, software application, software resource | Software retrieval-augmented knowledge mining method with deep thinking LLMs for biomedical research and clinical support. Cross-document question answering dataset addressing current QA limitations, and features Progressive Retrieval-Augmented Reasoning framework that combines advanced retrieval-generation techniques with self-reflection mechanisms and deep-thinking large language models to enhance answer accuracy and contextual relevance.Used to evaluate latent knowledge retrieval and multi-hop reasoning capabilities. | Progressive Retrieval-Augmented Reasoning, large language models, evaluate latent knowledge retrieval, evaluate multi-hop reasoning capabilities, | Free, Available for download, Freely available | SCR_027068 | 2026-08-14 09:29:37 | 1 | |||||||||||
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University of Birmingham Intravital Microscopy Core Facility Resource Report Resource Website 1+ mentions |
University of Birmingham Intravital Microscopy Core Facility (RRID:SCR_027189) | service resource, access service resource, core facility | Imaging facility for intravital microscopy. Facility equipment includes widefield, confocal, and multiphoton microscopes. Additional tools, such as laser ablation systems, allow us to probe vascular events such as thrombosis in fine detail. We also have tools for measurement of vascular perfusion, such as full-field laser speckle and laser doppler. | ABRF | Open | ABRF_4049 | https://coremarketplace.org/?FacilityID=4049&citation=1 | SCR_027189 | University of Birmingham UOB Intravital Microscopy, UOB Intravital Microscopy | 2026-08-14 09:29:39 | 3 | ||||||||
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SeuratObject Resource Report Resource Website 10+ mentions |
SeuratObject (RRID:SCR_027221) | software toolkit, source code, software resource | Software R package defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. | S4 classes for single-cell genomic data, dimensionality reduction embeddings, nearest-neighbor graphs, spatially-resolved coordinates, | works with: LoupeR | Free, Available for download, Freely available, | https://CRAN.R-project.org/package=SeuratObject, https://github.com/satijalab/seurat-object | SCR_027221 | SeuratObject:Data Structures for Single Cell Data | 2026-08-14 09:29:52 | 13 | ||||||||
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PanGIA Resource Report Resource Website 1+ mentions |
PanGIA (RRID:SCR_027069) | source code, software application, software resource | Software tool for predicting ncRNA-disease associations. Used for identifying association between ncRNAs and diseases. | predicting ncRNA-disease associations, association between ncRNAs and diseases, | Free, Available for download, Freely available | SCR_027069 | 2026-08-14 09:29:28 | 1 | |||||||||||
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Another Gtf/Gff Analysis Toolkit Resource Report Resource Website 10+ mentions |
Another Gtf/Gff Analysis Toolkit (RRID:SCR_027223) | AGAT | software toolkit, source code, software resource | Software toolkit containing lots of useful tools for genomics analyses. Used to check, fix, pad missing information (features/attributes) of any kind of GTF and GFF to create complete, sorted and standardised gff3 format. | genomics analyses tools, check, fix, pad missing information, GTF, GFF, create gff3 format, | Free, Available for download, Freely available | SCR_027223 | Another Gtf/Gff Analysis Toolkit (AGAT) | 2026-08-14 09:29:31 | 40 | |||||||||
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Ethotrack Resource Report Resource Website 1+ mentions |
Ethotrack (RRID:SCR_027105) | software application, software resource | Video analysis software designed for the study of animal behavior. | Video analysis, study of animal behavior, | Restricted | SCR_027105 | 2026-08-14 09:29:37 | 1 | |||||||||||
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MetaMarkers Resource Report Resource Website 1+ mentions |
MetaMarkers (RRID:SCR_027104) | source code, software resource | Software R package to efficiently compute robust markers across single-cell datasets. Robust marker signatures from single-cell data. | compute robust markers, across single-cell datasets, markers, dataset, marker signatures, single-cell data, | is related to: BRAIN Initiative Cell Atlas Network | Free, Available for download, Freely available | SCR_027104 | Gillis lab MetaMarkers | 2026-08-14 09:29:52 | 6 | |||||||||
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University of Birmingham Protein Expression Core Facility Resource Report Resource Website 1+ mentions |
University of Birmingham Protein Expression Core Facility (RRID:SCR_027106) | service resource, access service resource, core facility | Core, within College of Medicine and Health, offers expert support for all aspects of recombinant protein production. Using range of expression systems, produces proteins suitable for diverse downstream applications. | ABRF, recombinant protein production, expression systems, |
is listed by: ABRF CoreMarketplace has parent organization: University of Birmingham; Birmingham; United Kingdom |
ABRF_3274 | https://coremarketplace.org/?FacilityID=3274&citation=1 | SCR_027106 | University of Birmingham Protein Expression Facility | 2026-08-14 09:29:28 | 1 | ||||||||
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Brain Knowledge Platform Resource Report Resource Website 1+ mentions |
Brain Knowledge Platform (RRID:SCR_027180) | topical portal, database, portal, data or information resource, catalog | Comprehensive multi-species platform for neuroscience teams to understand brain cells and anatomy. Brain Knowledge Platform includes catalog of relevant data and projects, as well as visualization tools for understanding brain cell types. | Brain knowledge, brain cells and anatomy, catalog, data and projects, understanding brain cell types, |
is related to: BRAIN Initiative Cell Atlas Network is related to: BICCN has parent organization: Allen Institute for Brain Science |
Free, Freely available, | SCR_027180 | 2026-08-14 09:29:38 | 3 | ||||||||||
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Columbia University Zuckerman Institute Cellular Imaging Core Facility Resource Report Resource Website 1+ mentions |
Columbia University Zuckerman Institute Cellular Imaging Core Facility (RRID:SCR_027061) | service resource, access service resource, core facility | Provides access to imaging technology. Offers combination of both commercial platforms and not-yet commercialized technologies that enable innovative research centered around structural and functional imaging. Optical microscopy and image analysis platform. | Optical microscopy, image analysis, imaging, structural and functional imaging, |
is listed by: ABRF CoreMarketplace has parent organization: Columbia University; New York; USA |
ABRF_3264 | https://coremarketplace.org/RRID:SCR_027061/?citation=1 | SCR_027061 | Zuckerman Institute Cellular Imaging | 2026-08-14 09:29:51 | 1 |
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