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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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CNVMetrics Resource Report Resource Website 1+ mentions |
CNVMetrics (RRID:SCR_027263) | software toolkit, data processing software, software application, data analysis software, software resource | Software R package to calculate similarity metrics to facilitate copy number variant comparison among samples and/or methods. | metrics, copy-number, calculate similarity metrics, copy number variant, copy number variant comparison, | Free, Available for download, Freely available, | SCR_027263 | Copy Number Variant Metrics | 2026-08-14 09:29:40 | 1 | ||||||||||
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University of Florida Scripps Institute for Biomedical Innovation and Technology Flow Cytometry Core Facility Resource Report Resource Website 1+ mentions |
University of Florida Scripps Institute for Biomedical Innovation and Technology Flow Cytometry Core Facility (RRID:SCR_027278) | service resource, access service resource, core facility | Core provides flow cytometry and cell sorting services. |
is listed by: ABRF CoreMarketplace has parent organization: University of Florida; Florida; USA |
Open | ABRF_4076 | https://coremarketplace.org/RRID:SCR_027278/?citation=1 | SCR_027278 | 2026-08-14 09:29:53 | 1 | |||||||||
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Augusta University Georgia Cancer Center Biorepository Core Facility Resource Report Resource Website 1+ mentions |
Augusta University Georgia Cancer Center Biorepository Core Facility (RRID:SCR_027271) | service resource, access service resource, core facility | Core provides collection, annotation, and storage solutions. This Biorepository is also home to a state-wide resource, the Biorepository Alliance of Georgia for Oncology (BRAG-Onc), which functions to collect samples from 6 participating sites across the State to represent the diversity of cancer patients within the State and to enhance cancer research in Georgia.Tissue specimens are fast-frozen in vapor phase liquid nitrogen to preserve their integrity and stored in large cryofreezers at -170 to -190°C. Blood is routinely separated into serum or plasma and buffy coats prior to freezing. Blood derivatives are stored at -70 to -80°C. The freezers are monitored constantly and are connected to an alarm system to ensure that the low temperatures are maintained. | ABRF, Biorepository Alliance of Georgia for Oncology, collect samples, cancer patients, |
is listed by: ABRF CoreMarketplace has parent organization: Augusta University; Georgia; USA |
ABRF_4071 | https://coremarketplace.org/RRID:SCR_027271/?citation=1 | SCR_027271 | Georgia Cancer Center Biorepository (GCCB) | 2026-08-14 09:29:40 | 1 | ||||||||
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Celline Resource Report Resource Website 1+ mentions |
Celline (RRID:SCR_027273) | software toolkit, source code, software resource | Software Python pipeline for one-step retrieval and integrative analysis of public single-cell RNA sequencing data. | retrieval and integrative analysis, public single-cell RNA sequencing data, single-cell RNA, sequencing data, | Free, Available for download, Freely available, | SCR_027273 | 2026-08-14 09:29:31 | 1 | |||||||||||
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Cancer Research UK Scotland Institute Molecular Technology Service Core Facility Resource Report Resource Website 1+ mentions |
Cancer Research UK Scotland Institute Molecular Technology Service Core Facility (RRID:SCR_027368) | service resource, access service resource, core facility | Core provides Next Generation Sequencing (NGS) services and Single Cell services predominantly focussing on single cell RNAseq. Processes samples for variety of cancer associated projects, in both mouse and human derived materials. Offers full end-to-end service, from initial study design and planning, through sample QC, full library preparation, sequencing and data return. Offers range of standard molecular tests covering, plasmid purifications, Sanger sequencing and mycoplasma screening. | ABRF, Next Generation Sequencing, single cell RNAseq, cancer, mouse, human, |
is listed by: ABRF CoreMarketplace has parent organization: Cancer Research UK Scotland Institute |
Restricted | ABRF_4609 | https://coremarketplace.org/RRID:SCR_027368/?citation=1 | SCR_027368 | Scotland Institute Molecular Technology Service Core Facility | 2026-08-14 09:29:33 | 1 | |||||||
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enrichViewNet Resource Report Resource Website 1+ mentions |
enrichViewNet (RRID:SCR_027256) | software toolkit, data processing software, software application, software resource, source code, data visualization software | Software package for visualization of functional enrichment results as network graphs. | visualization of functional enrichment results, network graphs, | Free, Available for download, Freely available | https://bioconductor.org/packages/enrichViewNet/ | SCR_027256 | 2026-08-14 09:29:31 | 1 | ||||||||||
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Weill Cornell Medicine Human Therapeutic Organoid Core Facility Resource Report Resource Website 1+ mentions |
Weill Cornell Medicine Human Therapeutic Organoid Core Facility (RRID:SCR_027251) | service resource, access service resource, core facility | Facility serves as central facility for human organoid technology to accelerate organoid-based scientific discovery. Provides human pluripotent stem cell (hPSC) derived as well as tissue derived cells and organoids. | ABRF, human organoid technology, human pluripotent stem cell, tissue derived cells and organoids, |
is listed by: ABRF CoreMarketplace has parent organization: Weill Cornell Medicine |
ABRF_4066 | https://coremarketplace.org/RRID:SCR_027251/?citation=1 | SCR_027251 | Weill Cornell Medicine Human Therapeutic Organoid Core (HTOC), Human Therapeutic Organoid Core Facility | 2026-08-14 09:29:39 | 2 | ||||||||
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HVRLocator Resource Report Resource Website 1+ mentions |
HVRLocator (RRID:SCR_027407) | software application, software resource | Software application to identify spanning hypervariable region(s) from amplicon sequencing variants or SRA public runs (SRR). Aligns query sequences to reference E. coli full-length 16S rRNA gene and identifies spanning region through alignment. Used for identifying hypervariable regions in 16S rRNA big datasets. | Align query sequences, reference E. coli full-length 16S rRNA gene, SRA public runs, 16S rRNA, Amplicon, SRA, identify spanning hypervariable region, amplicon sequencing variants, SRA public runs, identifying hypervariable regions, 16S rRNA big datasets, | German Centre for Integrative Biodiversity Research (iDiv) sIBTEDS | DOI:10.1101/2025.07.24.666487 | Free, Available for download, Freely available | https://github.com/fbcorrea/hvrlocator/ | SCR_027407 | 2026-08-14 09:29:54 | 1 | ||||||||
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Multi Scale Clustering Resource Report Resource Website 1+ mentions |
Multi Scale Clustering (RRID:SCR_027342) | MSC | software toolkit, source code, software resource | Software R package for multi-scale clustering to perform single-cell transcriptome clustering. | multi-scale clustering, single-cell transcriptome clustering, | Free, Available for download, Freely available | SCR_027342 | Multi-scale Single-cell Clustering (MSC) | 2026-08-14 09:29:41 | 1 | |||||||||
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University College London LMCB Electron Microscopy Core Facility Resource Report Resource Website 1+ mentions |
University College London LMCB Electron Microscopy Core Facility (RRID:SCR_027340) | service resource, access service resource, core facility | Electron microscopy facility specialising in cell biological electron microscopy for basic and medical research applications. | ABRF, cell biological electron microscopy, electron microscopy services, |
is listed by: ABRF CoreMarketplace has parent organization: University College London; London; United Kingdom |
ABRF_4100 | https://coremarketplace.org/RRID:SCR_027340/?citation=1 | SCR_027340 | 2026-08-14 09:29:53 | 3 | |||||||||
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EssSubgraph Resource Report Resource Website 1+ mentions |
EssSubgraph (RRID:SCR_027354) | EssSubgraph | algorithm resource, software resource | A model algorithm that integrates omics data and network data to predict essential genes. | Biomarker, essential gene prediction, GNN | Cancer | National Science Foundation 2243562; National Institutes of Health R35GM149531 |
DOI:10.1101/2025.07.21.665218 | Integrating omics data and protein-protein interaction network data to predict essential genes. | https://github.com/wenmm/EssSubgraph/tree/main | SCR_027354 | 2026-08-14 09:29:54 | 1 | ||||||
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Dynamont Resource Report Resource Website 1+ mentions |
Dynamont (RRID:SCR_027357) | source code, software resource | Software segmentation/resquiggling tool for ONT signals. Dynamic programming approach to segment ONT signals. | segmentation, resquiggling, ONT signals, | Free, Available for download, Freely available | , SCR_027365 | SCR_027357 | 2026-08-14 09:29:33 | 1 | ||||||||||
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GFFx Resource Report Resource Website 1+ mentions |
GFFx (RRID:SCR_027445) | software toolkit, source code, software resource | Software Rust-Based suite of utilities for ultra-fast genomic feature extraction. Used for ultra-fast and scalable genome annotation access. Can be used both as a command-line tool and as a Rust library. | genomic feature extraction, genome annotation access, | National Natural Science Foundation of China | DOI:10.1101/2025.08.08.669426 | Free, Available for download, Freely available | https://crates.io/crates/gffx | SCR_027445 | 2026-08-14 09:29:43 | 1 | ||||||||
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USEARCH Resource Report Resource Website 1000+ mentions |
USEARCH (RRID:SCR_027438) | source code, software application, software resource | Software application that provides search and clustering functionality, typically used with amplicon sequence data. Used to assign sequences to clusters. | assign sequences to clusters, search and clustering functionality, amplicon sequence data, | PMID:20709691 | Free, Available for download, Freely available | https://github.com/rcedgar/usearch12 | SCR_027438 | USEARCH12 | 2026-08-14 09:29:35 | 3225 | ||||||||
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University of Connecticut Advanced Light Microscopy Core Facility Resource Report Resource Website 1+ mentions |
University of Connecticut Advanced Light Microscopy Core Facility (RRID:SCR_027547) | service resource, access service resource, core facility | Facility provides training and access to advanced light microscopy systems at an hourly rate. In addition, we are available to consult with and support users at every stage of a project including: experimental design, sample preparation, image acquisition, analysis, and data preparation. | ABRF, advanced light microscopy, microscopy, experimental design, sample preparation, image acquisition, analysis, data preparation, |
is listed by: ABRF CoreMarketplace has parent organization: University of Connecticut; Connecticut; USA |
ABRF_5546 | https://https://coremarketplace.org/?FacilityID=5546&citation=1 | SCR_027547 | , University of Connecticut Advanced Light Microscopy Facility, Advanced Light Microscopy Facility | 2026-08-14 09:29:37 | 2 | ||||||||
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Fedrann Resource Report Resource Website 1+ mentions |
Fedrann (RRID:SCR_027416) | software toolkit, data processing software, software application, data analysis software, software resource, source code, sequence analysis software | Software scalable pipeline for overlap detection based on large-scale sequencing data. It is based on three steps: feature extraction, dimenality reduction, and approximate k-nearest neighbor search. Used for effective long-read overlap detection based on dimensionality reduction and approximate nearest neighbors. | long-read overlap detection, overlap detection, large-scale sequencing data, feature extraction, dimenality reduction, approximate k-nearest neighbor search, | National Key RandD Program of China | DOI:10.1101/2025.05.30.656979 | Free, Available for download, Freely available, | SCR_027416 | 2026-08-14 09:29:42 | 1 | |||||||||
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Grobid Resource Report Resource Website 1+ mentions |
Grobid (RRID:SCR_027539) | source code, software application, software resource | Software tool for extracting information from scholarly documents. | extracting information from scholarly documents, extracting information, scholarly documents, | Free, Available for download, Freely available | SCR_027539 | GeneRation Of BIbliographic Data | 2026-08-14 09:29:37 | 4 | ||||||||||
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DMC-BrainMap Resource Report Resource Website 1+ mentions |
DMC-BrainMap (RRID:SCR_027433) | source code, software application, software resource | Software napari plugin for flexible mapping of various features (cell bodies, axonal densities, injections sites, optical fibers, Neuropixels probes) to standardized reference spaces included in BrainGlobe. Used for anatomical mapping. | anatomical mapping, cell bodies, axonal densities, injections sites, optical fibers, Neuropixels probes, | Free, Available for download, Freely available | SCR_027433 | 2026-08-14 09:29:54 | 2 | |||||||||||
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DMC-FluoImager Resource Report Resource Website 1+ mentions |
DMC-FluoImager (RRID:SCR_027435) | source code, software application, software resource | Software Python project for whole slide image acquisition using a fluorescence microscope. | whole slide image acquisition, fluorescence microscope, | Free, Available for download, Freely available | SCR_027435 | 2026-08-14 09:29:35 | 1 | |||||||||||
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memesuite-lite Resource Report Resource Website 1+ mentions |
memesuite-lite (RRID:SCR_027429) | source code, software application, software resource | Software application as lightweight reimplementation of some of the algorithms in the MEME suite in Python. | lightweight reimplementation, MEME suite, Python | is related to: MEME Suite - Motif-based sequence analysis tools | Free, Available for download, Freely available | SCR_027429 | 2026-08-14 09:29:43 | 3 |
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