Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
University Health Network Princess Margaret Living PDX Core Facility Resource Report Resource Website 1+ mentions |
University Health Network Princess Margaret Living PDX Core Facility (RRID:SCR_027523) | PMLB PDX Core | core facility, access service resource, biobank, storage service resource, service resource, material storage repository | Core provides services for the use of Xenograft (PDX) models listed in open global catalogue of PDX models for comprehensive search and attribute filtering support for clinico-pathological and molecular data. Molecular data and visualization of profiled models could be accessed through the institute's portal. | ABRF, services for use of Xenograft (PDX) models, open global catalogue of PDX models, |
is listed by: ABRF CoreMarketplace has parent organization: University Health Network |
ABRF_5428 | https://coremarketplace.org/RRID:SCR_027523/?citation=1 | SCR_027523 | Princess Margaret Living Biobank (PDX) | 2026-08-14 09:29:55 | 1 | |||||||
|
University Health Network Princess Margaret Genomics Centre PMGC Core Facility Resource Report Resource Website 1+ mentions |
University Health Network Princess Margaret Genomics Centre PMGC Core Facility (RRID:SCR_027524) | service resource, access service resource, core facility | Core is dedicated to providing access to cost-effective and high quality genomics services including standard and custom-tailored DNA sequencing using Illumina technologies, epigenomics, panel-based profiling (Luminex and Nanostring) and functional genomics. Single cell genomics applications on variety of popular platforms. | ABRF, genomics services, standard and custom-tailored DNA sequencing, Illumina, |
is listed by: ABRF CoreMarketplace has parent organization: University Health Network |
Open | ABRF_5429 | https://coremarketplace.org/RRID:SCR_027524/?citation=1 | SCR_027524 | Princess Margaret (PM) Genomics Centre | 2026-08-14 09:29:45 | 2 | |||||||
|
BEACON Resource Report Resource Website 1+ mentions |
BEACON (RRID:SCR_027484) | source code, software repository, software resource | Software application to perform Bayesian analysis on expression and gene dependency data across different cell lineages. Integrates expression as the dependent variable and gene dependency data as the independent variable. Used to identify cancer gene targets by jointly analyzing global transcriptomic and proteomic profiles with genetic dependency data of cancer cell lines across tissue lineages. | analyzing global transcriptomic, proteomic profiles, genetic dependency data, cancer cell lines, | PMID:39484404 | Free, Available for download, Freely available | SCR_027484 | 2026-08-14 09:29:08 | 2 | ||||||||||
|
SeedGerm-VIG Resource Report Resource Website 1+ mentions |
SeedGerm-VIG (RRID:SCR_027483) | data processing software, software application, data analysis software, time-series analysis software, software resource, source code | Software pipeline to quantify seed vigour in wheat and other cereal crops using deep learning powered dynamic phenotypic analysis. | seed vigour, germination, vision-based deep learning, dynamic trait analysis, wheat | National Natural Science Foundation of China 32070400 & U24A20402; Allan & Gill Gray Foundation’ Sustainable Productivity for Crop Improvement G118688; the United Kingdom Research and Innovation's (UKRI) Biotechnology and Biological Sciences Research Council (BBSRC) AI in Bioscience Grant BB/Y513969/1; BBSRC’s International Partnership Grant BB/Y514081/1; BBSRC’s ALERT grant BB/X019683/1 |
DOI:10.1093/gigascience/giaf129 | Free, Available for download, Freely available | SCR_027483 | 2026-08-14 09:29:55 | 1 | |||||||||
|
Pore-c Workflow Resource Report Resource Website 1+ mentions |
Pore-c Workflow (RRID:SCR_027517) | workflow software, data processing software, software application, source code, software resource | Software workflow for analysing Pore-c data for chromatin conformation capture. | analysing Pore-c data, chromatin conformation capture, | Free, Available for download, Freely available | SCR_027517 | 2026-08-14 09:29:55 | 3 | |||||||||||
|
University Health Network Princess Margaret Living Biobank PDO Core Facility Resource Report Resource Website 1+ mentions |
University Health Network Princess Margaret Living Biobank PDO Core Facility (RRID:SCR_027530) | PMLB PDO Core | core facility, access service resource, biobank, storage service resource, service resource, material storage repository | Core provides services for the use of patient-Derived tumor Organoid (PDO) model.Organoid models are derived from patient-derived xenograft tissues, primary tumors, and metastatic patient tissues. PMLB organoid repository includes models generated from colorectal, pancreatic, and lung cancer tissues. | ABRF, patient-Derived tumor Organoid (PDO) model, organoid model, patient-derived xenograft tissues, primary tumors, metastatic patient tissues, organoid repository, colorectal, pancreatic, lung cancer tissues, |
is listed by: ABRF CoreMarketplace has parent organization: University Health Network |
ABRF_5436 | https://coremarketplace.org/RRID:SCR_027530/?citation=1 | SCR_027530 | , PM Living Biobank, Princess Margaret Living Biobank (PDO) | 2026-08-14 09:29:45 | 3 | |||||||
|
hdWGCNA Resource Report Resource Website 10+ mentions |
hdWGCNA (RRID:SCR_027496) | software toolkit, source code, software resource | Software R package for performing weighted gene co-expression network analysis in high dimensional transcriptomics data such as single-cell RNA-seq or spatial transcriptomics. | weighted gene co-expression network, high dimensional transcriptomics data, single-cell RNA-seq, transcriptomics | NIA 1RF1AG071683; NINDS P01NS084974; NIDA 1U01DA053826; NIA U54 AG054349; NIA 3U19AG068054 |
PMID:37426759 | Free, Available for download, Freely available | SCR_027496 | hd Weighted Gene Co-expression Network Analysis | 2026-08-14 09:29:55 | 10 | ||||||||
|
University Health Network Bioinformatics and High Performance Computing HPC Core Facility Resource Report Resource Website 1+ mentions |
University Health Network Bioinformatics and High Performance Computing HPC Core Facility (RRID:SCR_027532) | service resource, access service resource, core facility | Core provides services including Basic High-Throughput Sequencing Analysis, Advanced Data Analysis, High Performance Computing. | ABRF, Basic High-Throughput Sequencing Analysis, Advanced Data Analysis, High Performance Computing, |
is listed by: ABRF CoreMarketplace has parent organization: University Health Network |
ABRF_5438 | https://coremarketplace.org/RRID:SCR_027532/?citation=1 | SCR_027532 | Bioinformatics and High Performance Computing (HPC) Core | 2026-08-14 09:29:55 | 1 | ||||||||
|
University Health Network Spatio-Temporal Targeting and Amplification of Radiation Response Core Facility Resource Report Resource Website 1+ mentions |
University Health Network Spatio-Temporal Targeting and Amplification of Radiation Response Core Facility (RRID:SCR_027531) | service resource, access service resource, core facility | Offers services to support studies in medical fields across oncology, cardiology, metabolic diseases, radiotheranostics and more.Helps with study design to final data analysis, including GLP-compliant histopathology services. | ABRF, study design, data analysis, GLP-compliant histopathology services, |
is listed by: ABRF CoreMarketplace has parent organization: University Health Network |
Restricted | ABRF_5437 | https://coremarketplace.org/RRID:SCR_027531/?citation=1 | https://www.sttarr.com/ | SCR_027531 | Spatio-Temporal Targeting and Amplification of Radiation Response (STTARR) | 2026-08-14 09:29:36 | 1 | ||||||
|
ARTool Resource Report Resource Website 10+ mentions |
ARTool (RRID:SCR_027412) | software toolkit, source code, software resource | Software R package for aligned rank transform for nonparametric factorial ANOVAs. | Aligned rank transform, nonparametric factorial ANOVAs, | Free, Available for download, Freely available | SCR_027412 | Aligned Rank Tool | 2026-08-14 09:29:54 | 11 | ||||||||||
|
University Health Network Advanced Optical Microscopy Core Facility Resource Report Resource Website 1+ mentions |
University Health Network Advanced Optical Microscopy Core Facility (RRID:SCR_027535) | service resource, access service resource, core facility | Core offers services in optical microscopy experiments including: confocal, multiphoton, super-resolution, FRAP, FRET, live-cell timelapse, whole-slide scanning, image analysis and more. | ABRF, microscopy, confocal, multiphoton, super-resolution, FRAP, FRET, live-cell timelapse, whole-slide scanning, image analysis, |
is listed by: ABRF CoreMarketplace has parent organization: University Health Network |
ABRF_5441 | https://coremarketplace.org/RRID:SCR_027535/?citation=1 | SCR_027535 | Advanced Optical Microscopy Facility (AOMF) | 2026-08-14 09:29:36 | 1 | ||||||||
|
PyTorch Lightning Resource Report Resource Website 1+ mentions |
PyTorch Lightning (RRID:SCR_027468) | software application, software resource | Open-source software Python library that provides high-level interface for PyTorch deep learning framework. | Python library, interface for PyTorch, | works with: PyTorch | Restricted | SCR_027468 | 2026-08-14 09:29:35 | 3 | ||||||||||
|
Souporcell Resource Report Resource Website 1+ mentions |
Souporcell (RRID:SCR_027462) | source code, software application, software resource | Software tool to cluster cells using the genetic variants detected within the scRNAseq reads. Robust clustering of single-cell RNA-seq data by genotype without reference genotypes. Used for clustering scRNAseq by genotypes. | Clustering scRNAseq by genotypes, cluster cells, genetic variants, scRNAseq reads, | Wellcome Trust ; UK Medical Research Council ; British Heart Foundation |
PMID:32366989 | Free, Available for download, Freely available | SCR_027462 | 2026-08-14 09:29:35 | 8 | |||||||||
|
HyenaDNA Resource Report Resource Website 1+ mentions |
HyenaDNA (RRID:SCR_027471) | source code, software application, software resource | Software application as long-range genomic foundation model pretrained on context lengths of up to 1 million tokens at single nucleotide resolution. | long-range genomic foundation model, 1 million tokens, single nucleotide, | Free, Available for download, Freely available | SCR_027471 | 2026-08-14 09:29:36 | 1 | |||||||||||
|
GPS-Palm Resource Report Resource Website 1+ mentions |
GPS-Palm (RRID:SCR_027506) | software application, software resource | Software deep learning-based graphic presentation system for the prediction of S-palmitoylation sites in proteins. | prediction of S-palmitoylation sites, proteins, S-palmitoylation sites in proteins, S-palmitoylation sites, | Natural Science Foundation of China | PMID:32248222 | Free, Freely available, | SCR_027506 | 2026-08-14 09:29:55 | 8 | |||||||||
|
Ibidi GmbH Resource Report Resource Website 1+ mentions |
Ibidi GmbH (RRID:SCR_027508) | commercial organization, production service resource, reagent manufacture, material service resource, service resource | German manufacturer specializing in advanced cell culture and imaging products, including µ-Slide chambers, microfluidic devices, and reagents for live-cell analysis. Ibidi’s technologies support high-resolution microscopy, cell migration assays, angiogenesis studies, and immunological research. | manufacturer, advanced cell culture and imaging products, µ-Slide chambers, microfluidic devices, reagents for live-cell analysis, | SCR_027508 | 2026-08-14 09:29:44 | 4 | ||||||||||||
|
Icahn School of Medicine at Mount Sinai Neuropathology Brain Bank and Research CoRE Facility Resource Report Resource Website 1+ mentions |
Icahn School of Medicine at Mount Sinai Neuropathology Brain Bank and Research CoRE Facility (RRID:SCR_027565) | tissue bank, access service resource, biomaterial supply resource, service resource, material resource, core facility | Provides access to collection of human postmortem brain tissues, including fresh, frozen, and formalin-fixed paraffin-embedded (FFPE) specimens, along with detailed clinical histories and neuropathological assessments. Available histology services include processing and embedding, slide sectioning for FFPE and cryosections, immunohistochemistry (IHC), immunofluorescence (IF), and advanced RNA assays such as RNAscope, BaseScope, and miRscope. High-resolution digital slide imaging is performed using the GT450 scanner. CoRE scientists also collaborate with investigators and trainees to support project development, method optimization and troubleshooting, data analysis. | ABRF, collection of human postmortem brain tissues, fresh, frozen, formalin-fixed paraffin-embedded (FFPE), specimens, histology services, |
is listed by: ABRF CoreMarketplace has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
ABRF_5602 | https://https://coremarketplace.org/?FacilityID=5602&citation=1 | SCR_027565 | Icahn School of Medicine at Mount Sinai Neuropathology Brain Bank & Research CoRE, , Neuropathology Brain Bank & Research CoRE | 2026-08-14 09:29:55 | 2 | ||||||||
|
CIPR-Package Resource Report Resource Website 1+ mentions |
CIPR-Package (RRID:SCR_027697) | software toolkit, source code, software resource | Software R package for annotating cell clusters in scRNAseq data. | annotating cell clusters in scRNAseq data, annotating cell clusters, scRNAseq data, single cell RNA sequencing experiments, | NIA R01 AG047956; NIA R01 AI123106 |
PMID:32414321 | Free, Available for download, Freely available | SCR_027697 | Cluster Identity PRedictor Package, Cluster Identity PRedictor (CIPR) | 2026-08-14 09:29:48 | 1 | ||||||||
|
U3-Nomogram Resource Report Resource Website 1+ mentions |
U3-Nomogram (RRID:SCR_027696) | source code, software application, software resource | Software application for C-CAT CALICO database. Used for Germline-focUsed analysis of tUmoUr-detected variants with Nomogram for C-CAT CALICO database. | C-CAT CALICO database, Germline-focUsed analysis, tUmoUr-detected variants | Free, Available for download, Freely available | SCR_027696 | 2026-08-14 09:29:57 | 1 | |||||||||||
|
DNA Genotek Inc Resource Report Resource Website 1+ mentions |
DNA Genotek Inc (RRID:SCR_027611) | service resource, commercial organization | Subsidiary of OraSure Technologies, Inc. focuses on providing biological sample collection products and services for human genomics, microbiome and infectious disease applications. Offers Research Use Only products to collect and preserve large amounts of DNA or RNA from multiple sample types. | OraSure Technologies, products and services, human genomics, microbiome and infectious disease, | SCR_027611 | 2026-08-14 09:29:56 | 1 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
