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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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EMBL-EBI Pathogens - COVID-19 Resource Report Resource Website |
EMBL-EBI Pathogens - COVID-19 (RRID:SCR_018343) | data or information resource, topical portal, portal, disease-related portal | Data collection related to COVID-19 held at EMBL-EBI , including sequences of outbreak isolates and records related to coronavirus biology, protein expression, protein sequence, protein structure, proteome and translatome data and literature. | COVID-19, COVID-19 data, EMBL-EBI, sequences of outbreak isolates, coronavirus, protein expression, protein sequence, protein structure, proteome, translatome, data, COVID-19 literature | is related to: EMBL-EBI COVID-19 Portal | COVID-19 | Free, Freely available | SCR_018343 | 2026-08-05 10:47:02 | 0 | |||||||||
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2019 Novel Coronavirus Resource (2019nCoVR) by China National Center for Bioinformation Resource Report Resource Website 1+ mentions |
2019 Novel Coronavirus Resource (2019nCoVR) by China National Center for Bioinformation (RRID:SCR_018342) | 2019nCoVR | data or information resource, topical portal, portal, disease-related portal | Bioinformation related to COVID-19. Site developed and maintained by China National Center for Bioinformation. Collection of sequences, genome variations, publication, clinical resource data. | COVID-19, sequence, genome sequence, genome variation, data, China National Center for Bioinformation | COVID-19 | Free, Freely available | SCR_018342 | 2019 Novel Coronavirus Resource, 2019 Novel Coronavirus Resource (2019nCoVR), CNCB 2019nCoVR, CNCB 2019 Novel Coronavirus Resource | 2026-08-05 10:47:00 | 4 | ||||||||
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CurveFitter Resource Report Resource Website 1+ mentions |
CurveFitter (RRID:SCR_018461) | software resource, data processing software, software application, data analysis software | Software tool for growth curve fitting and visualization. Program allows to fit growth curve using simple GUI or advanced scripting environment. Used to fit growth curves generated for data collected in microtiter plates or elsewhere. | Growth curve fitting, data visualization, data, microtiter plate data, microbiology, microtiter plate | Free, Available for download, Freely available | https://archive.codeplex.com/?p=curvefitter | SCR_018461 | curvefitter | 2026-08-05 10:47:02 | 3 | |||||||||
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Big Data Processor Resource Report Resource Website 1+ mentions |
Big Data Processor (RRID:SCR_018484) | BDP | data processing software, image analysis software, software application, software resource, image processing software | Software tool for visual inspection and processing of big image data. Enables loading of Tiff and Hdf5 based image data. BDC supports cropping and saving of big image data including binning and bit depth conversion. Used for analysis of TB sized image data like light sheet microscopy or electron microscopy. | Image, image processor, data processor, data, processing, analysis, image data, microscopy | is a plug in for: Fiji | Free, Available for download, Freely available | https://github.com/embl-cba/fiji-plugin-bigDataProcessor | SCR_018484 | 2026-08-05 10:47:02 | 2 | ||||||||
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Islet eQTL Explorer Resource Report Resource Website 1+ mentions |
Islet eQTL Explorer (RRID:SCR_018692) | data or information resource, data access protocol, software resource, service resource, web service | Web tool for exploring variants in islet expression quantitative trait loci. Data is result of collaboration between Michigan University Parker lab, Department of Biostatistics and Center for Statistical Genetics at University of Michigan, National Human Genome Research Institute, Jackson Laboratory for Genomic Medicine, Department of Genetics at University of North Carolina, European Bioinformatics Institute, Department of Preventive Medicine at University of Southern California, and Department of Physiology and Biophysics at University of Southern California. | Exploring variants, islet expression, quantitative trait loci, data, chromatin, chromatin state annotation, gene, footprint, allele | has parent organization: University of Michigan; Ann Arbor; USA | Free, Freely available | SCR_018692 | 2026-08-05 10:47:04 | 1 | ||||||||||
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Mutation and Patient Database Resource Report Resource Website 1+ mentions |
Mutation and Patient Database (RRID:SCR_018806) | data or information resource, data set, database | Collection of published mutations and sequence variations in genes that cause Neuronal Ceroid Lipofuscinoses together with unpublished data included with permission. There are two tables for each human NCL disease gene - Patient Datasheets list all published or reported patients and families, and Mutation Datasheets list all published or reported mutations, cross-referenced to patient table. Datasheets are available to view or download as excel files for off-site use to aid local needs or interests. Database follows mutation nomenclature recommendations of Human Genome Variation Society. | Mutation, gene mutation, sequence variations, gene, human NCL disease gene, patient datasheet, mutation datasheet, mutation nomenclature, human genome variation society, data | has parent organization: University College London; London; United Kingdom | Neuronal Ceroid Lipofuscinoses, NCL, Batten disease | Free, Freely available | SCR_018806 | NCL Mutation Database, NCL Mutation and Patient Database | 2026-08-05 10:47:07 | 4 | ||||||||
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RiboTaper Resource Report Resource Website 1+ mentions |
RiboTaper (RRID:SCR_018880) | software resource, data processing software, software application, data analysis software | Software tool as analysis pipeline for ribosome profiling experiments, which exploits triplet periodicity of ribosomal footprints to call translated regions. Statistical approach that identifies translated regions on basis of characteristic three nucleotide periodicity of Ribo-seq data. | Ribo-seq data, analysis, ribosome profiling experiment, triplet periodicity, ribosomal footprint, translated region, three nucleotide periodicity, data, ribosome profiling, bio.tools |
is listed by: bio.tools is listed by: Debian |
NIGMS R01 GM104962; Berlin Institute for Medical Systems Biology |
PMID:26657557 | Free, Freely available | biotools:ribotaper | https://bioconda.github.io/recipes/ribotaper/README.html, https://bio.tools/ribotaper | SCR_018880 | 2026-08-05 10:47:07 | 8 | ||||||
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reshape Resource Report Resource Website 1+ mentions |
reshape (RRID:SCR_018983) | data processing software, software application, data analysis software, software toolkit, software resource | Software R package for flexibly restructuring and aggregating data. | Data restructuring, data aggregation, flexible data restructuring, data |
is related to: CRAN is related to: reshape2 |
Free, Freely available | SCR_018983 | reshape 0.8 | 2026-08-05 10:47:07 | 4 | |||||||||
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Annotree Resource Report Resource Website 10+ mentions |
Annotree (RRID:SCR_018980) | data or information resource, data access protocol, software resource, web service | Web tool for visualization of genome annotations across large phylogenetic trees.Used for visualization and exploration of functionally annotated microbial tree of life. Integrates taxonomic, phylogenetic and functional annotation data from bacterial and archaeal genomes. | Genome annotation, genome visualization, phylogenetic tree, functionally annotated tree, microbial tree of life, taxonomic data, phylogenetic data, functionally annotated data, bacterial genome, archaeal genome, genome distribution, data, bio.tools |
is listed by: Debian is listed by: bio.tools |
Ontario Early Researcher award ; NSERC Discovery Grant ; Australian Research Council Laureate Fellowship ; Tier II Canada Research Chair ; Natural Sciences and Engineering Research Council of Canada |
PMID:31081040 | Free, Freely available | biotools:Annotree | https://bio.tools/AnnoTree | SCR_018980 | AnnoTree 1.2 | 2026-08-05 10:47:07 | 22 | |||||
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SoftWoRx software Resource Report Resource Website 10+ mentions |
SoftWoRx software (RRID:SCR_019157) | data processing software, data acquisition software, image acquisition software, software application, image analysis software, data visualization software, software resource, image processing software | Software for acquisition, deconvolution, processing, analysis, and display of DeltaVision images. Used in DeltaVision OMX SR imaging system., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | GE Healthcare, DeltaVision OMX SR, imaging system, image, data | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_019157 | softWoRx 7.0, softWoRx 6.5.2 | 2026-08-05 10:47:10 | 34 | ||||||||||
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SC2diseases Resource Report Resource Website 1+ mentions |
SC2diseases (RRID:SCR_019093) | data or information resource, database, production service resource, service resource, analysis service resource | Manually curated database of single cell transcriptome for human diseases. scRNA-seq database derived from numerous human studies. Provides researchers with encyclopedia of biomarkers at level of genes, cells, and diseases. | Human disease, single cell transcriptome, data, manually curated data, biomarker | National Natural Science Foundation of China | PMID:33010177 | Free, Freely available | SCR_019093 | 2026-08-05 10:47:09 | 5 | |||||||||
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ClinTrajAn Resource Report Resource Website 1+ mentions |
ClinTrajAn (RRID:SCR_019018) | data processing software, software application, data visualization software, data analysis software, software resource | Software Python package for analysis of trajectories in clinical datasets. | Trajectories analysis, clinical datasets, analysis, data, , bio.tools |
is listed by: bio.tools is listed by: Debian |
Free, Available for download, Freely available | biotools:clintrajan | https://bio.tools/clintrajan | SCR_019018 | 2026-08-05 10:47:08 | 1 | ||||||||
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SoupX Resource Report Resource Website 50+ mentions |
SoupX (RRID:SCR_019193) | data processing software, software application, data analysis software, software toolkit, software resource | Software R package for estimation and removal of cell free mRNA contamination in droplet based single cell RNA-seq data. | Estimation, removal, cell free mRNA contamination, droplet based, single cell RNA-seq data, RNA-seq data, data, bio.tools |
is listed by: bio.tools is listed by: Debian |
Free, Available for download, Freely available | biotools:soupx | https://bio.tools/soupx | SCR_019193 | 2026-08-05 10:47:10 | 77 | ||||||||
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scPancMeta App Resource Report Resource Website 1+ mentions |
scPancMeta App (RRID:SCR_018939) | data or information resource, topical portal, portal | Portal for islet research community. Data for eight scRNA-seq datasets are combined to give consensus overview of islet cell type defining genes. Tools are provided for interacting with and comparing novel genesets generated. | Islet cell, islet genes, data, scRNAseq datasets, islet cell type, gene set generation, gene set comparison, data, islet | is related to: Human Islet Research Network (HIRN) | Restricted | SCR_018939 | 2026-08-05 10:47:07 | 1 | ||||||||||
|
CFTR2 Resource Report Resource Website 100+ mentions |
CFTR2 (RRID:SCR_019078) | data or information resource, portal, disease-related portal, topical portal, database | International initiative led by team of researchers and clinicians and supported by the US Cystic Fibrosis Foundation that seeks to provide complete, advanced and expert reviewed functional and clinical information on CFTR mutations. Provides information for patients, researchers, and general public about specific variants. For each variant or variant combination included in database, website will provide information about whether variant or variant combination is CF-causing, and information about sweat chloride, lung function, pancreatic status, and Pseudomonas infection rate in patients in CFTR2 database with this variant or variant combination. | CF gene, cystic fibrosis gene, functional testing, CFTR2 variant, data, CFTR mutations, clinical information, , FASEB list | is related to: Cystic Fibrosis Mutation Database | cystic fibrosis | Free, Freely available | SCR_019078 | Clinical and Functional TRanslation of CFTR, cftr2, Clinical and Functional TRanslation 2 | 2026-08-05 10:47:09 | 127 | ||||||||
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NSW BioNet Resource Report Resource Website 10+ mentions |
NSW BioNet (RRID:SCR_019162) | data or information resource, data repository, portal, storage service resource, service resource | Repository for biodiversity data products managed by Department of Planning, Industry and Environment, New South Wales, Australia. It stores species sightings, systematic surveys, threatened biodiversity records and species names. | Species sightings, systematic surveys, threatened biodiversity records, species names, data | Restricted | SCR_019162 | New South Wales BioNet | 2026-08-05 10:47:10 | 33 | ||||||||||
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D-EE Resource Report Resource Website 1+ mentions |
D-EE (RRID:SCR_019058) | data processing software, software application, data visualization software, data analysis software, software resource | Software tool for distributed dimensionality reduction and visualization. Distributed software for visualizing intrinsic structure of large scale single cell data written in C language. Its distributed storage and distributed computation technique allows efficiently analyze large scale single cell data at cost of constant time speedup. | Distributed dimensionality reduction, dimensionality reduction, distributed storage, distributed computation, large scale data, single cell data, data, , bio.tools |
is listed by: bio.tools is listed by: Debian |
Free, Available for download, Freely available | biotools:d-ee | https://bio.tools/d-ee | SCR_019058 | 2026-08-05 10:47:09 | 1 | ||||||||
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Physiobank Resource Report Resource Website 10+ mentions |
Physiobank (RRID:SCR_006949) | PhysioBank | data or information resource, data repository, catalog, database, storage service resource, service resource | Archive of well-characterized digital recordings of physiologic signals and related data for use by the biomedical research community. PhysioBank currently includes databases of multi-parameter cardiopulmonary, neural, and other biomedical signals from healthy subjects and patients with a variety of conditions with major public health implications, including sudden cardiac death, congestive heart failure, epilepsy, gait disorders, sleep apnea, and aging. The PhysioBank Archives now contain over 700 gigabytes of data that may be freely downloaded. PhysioNet is seeking contributions of data sets that can be made freely available in PhysioBank. Contributions of digitized and anonymized (deidentified) physiologic signals and time series of all types are welcome. If you have a data set that may be suitable, please review PhysioNet''s guidelines for contributors and contact them. | physiologic, signal, data, biomedical, research, community, cardiopulmonary, neural, biomedical, health, cardiac, death, congestive heart failure, epilepsy, gait, disorder, sleep apnea, bibliographic, normal, physiologic signal, time series, FASEB list |
is used by: NIF Data Federation is used by: Integrated Datasets is related to: PhysioToolkit is parent organization of: Gait in Aging and Disease Database is parent organization of: Gait in Parkinson's Disease is parent organization of: Gait Dynamics in Neuro-Degenerative Disease Data Base is parent organization of: Noise Enhancement of Sensorimotor Function |
Healthy, Sudden cardiac death, Congestive heart failure, Epilepsy, Gait disorder, Sleep apnea, Aging | NIGMS ; NIBIB U01-EB-008577 |
PMID:10851218 | Free, The community can contribute to this resource, Acknowledgement requested | nlx_48903, r3d100011236 | https://doi.org/10.17616/R3J048 | SCR_006949 | 2026-08-05 10:44:34 | 39 | ||||
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Neural Module Resource Report Resource Website 1+ mentions |
Neural Module (RRID:SCR_019270) | software resource, data processing software, software application, data analysis software | Neural Module by Axion BioSystems Inc, provides simplified approach to set up, execution and analysis of neural experiments. Enables Maestro Pro and Edge to record and analyze key parameters of neural network function, including activity, synchrony, and network oscillations. | Axion BioSystems Inc, neural data, neural network function, neural activity, neural synchrony, network oscillation, data analysis, neural experiment, data | Restricted | SCR_019270 | Neural Software Module, NeuralMetricTool | 2026-08-05 10:47:12 | 5 | ||||||||||
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Deep Collaborative Learning Resource Report Resource Website |
Deep Collaborative Learning (RRID:SCR_019258) | DCL | software resource, data processing software, software application, data analysis software | Software tool as deep collaborative learning with application to study of multimodal brain development. Uses deep network to represent original data and then seeks their correlations, while also linking data representation with phenotypical information. | Data fusion method, nonlinear predictive relationship, functional magnetic resonance imaging, brain research, data, data correlation, phenotypical information | has parent organization: Tulane University; Louisiana; USA | Free, Available for download, Freely available | SCR_019258 | dcl_model | 2026-08-05 10:47:12 | 0 |
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