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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ARCHS4 Resource Report Resource Website 50+ mentions |
ARCHS4 (RRID:SCR_015683) | software tool | ARCHS4 provides access to gene counts from HiSeq 2000 and HiSeq 2500 platforms for human and mouse experiments from GEO and SRA. The website enables downloading of the data in H5 format for programmatic access as well as a 3-dimensional view of the sample and gene spaces. Search features allow browsing of the data by meta data annotation, ability to submit your own up and down gene sets, and explore matching samples enriched for annotated gene sets. Selected sample sets can be downloaded into a tab separated text file through auto-generated R scripts for further analysis. Reads are aligned with Kallisto using a custom cloud computing platform. Human samples are aligned against the GRCh38 human reference genome, and mouse samples against the GRCm38 mouse reference genome. | SCR_015683 | 2026-08-01 12:05:17 | 71 | |||||||||||||
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Cuffmerge Resource Report Resource Website 500+ mentions |
Cuffmerge (RRID:SCR_015688) | software tool | The main purpose of Cufflinks.cuffmerge is to merge together several Cufflinks assemblies, making it easier to produce an assembly GTF file suitable for use with Cufflinks.cuffdiff. Cufflinks.cuffmerge also runs Cuffcompare in the background and automatically filters out transcribed fragments (transfrags) that are likely to be artifacts. Trapnell C, Hendrickson D,Sauvageau S, Goff L, Rinn JL, Pachter L. Differential analysis of gene regulation at transcript resolution with RNA-seq. Nature Biotechnology. 2013;31:46-53. | SCR_015688 | 2026-08-01 12:05:27 | 937 | |||||||||||||
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Dynamic Spatial Illuminator Software Resource Report Resource Website 1+ mentions |
Dynamic Spatial Illuminator Software (RRID:SCR_015725) | software resource | Software used in tandem with the Polygon 400 from Mightex systems to define areas of illumination, control light intensity and duration, and calibrate the device. | illumination, light intensity, device calibration, mightex system, polygon 400, spatial resolution | Commercially available, Available for purchase | http://www.mightexsystems.com/family_info.php?cPath=245_347_346&categories_id=346 | SCR_015725 | 2026-08-01 12:05:28 | 1 | ||||||||||
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Glo-Max Multi Detection System Resource Report Resource Website 1+ mentions |
Glo-Max Multi Detection System (RRID:SCR_015575) | resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 6, 2017. Detection instrument that gathers absorbance, fluorescence, and luminescence data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | detection instrument, absorbance machine, fluorescence machine, luminescence machine, hardware, instrument, equipment | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015575 | Glo Max Multi Detection System, GloMax Multi Detection System | 2026-08-01 12:05:25 | 9 | ||||||||||
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Torrent Variant Caller Standalone Resource Report Resource Website 10+ mentions |
Torrent Variant Caller Standalone (RRID:SCR_015694) | software tool | A variant vcf file analysis tool. | http://updates.iontorrent.com/tvc_standalone/ | SCR_015694 | 2026-08-01 12:05:27 | 38 | ||||||||||||
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IITC Life Sciences: Rotarod Test Resource Report Resource Website 1+ mentions |
IITC Life Sciences: Rotarod Test (RRID:SCR_015698) | instrument resource | Kit for assessing motor function and endurance in mice and rats. IITC’s Rotarod Test is capable of having up to five mice or rats tested at a time standard. | motor function, endurance, mouse, rat, drug resistance, material resource, hardware, instrument, equipment, USEDit |
is listed by: USEDit is related to: ANY-maze |
Commercially available | https://drive.google.com/file/d/18ukwQxS-8nMcPfZRWuBiBW8w-r429oR3/view?usp=drivesdk | https://www.iitcinc.com/pdf/Rotarod.pdf | SCR_015698 | IITC Rotarod Test, IITC Rotarod Treadmill, Rotarod Treadmill for mice and rats, IITC's Rotarod Test, Rotarod Test Rats and Mice, IITC Life Sciences Rotarod Treadmill | 2026-08-01 12:05:19 | 4 | |||||||
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Oncotopix Discovery Resource Report Resource Website 1+ mentions |
Oncotopix Discovery (RRID:SCR_015690) | software resource | Oncotopix Discovery is a comprehensive solution powered for whole slide image analysis of tissue sections, TMA slides across any image analysis application. Simple to program also for scientists without an IT background. | SCR_015690 | 2026-08-01 12:05:27 | 1 | |||||||||||||
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Neurocare: Neuroconn DC-Stimulator Plus Resource Report Resource Website 1+ mentions |
Neurocare: Neuroconn DC-Stimulator Plus (RRID:SCR_015520) | tDCS | instrument resource | Device for administering transcranial electrical stimulation. It has applications in cranial electrotherapy that provides a weak direct current for non-invasive Interventional Neurophysiology. | commercial resource, material resource, hardware, transcranial electrical stimulation, cranial electrotherapy, tES, instrument, equipment, USEDit | PMID:26889687 | Commercially available, Available for purchase | https://drive.google.com/file/d/1SPn3_PCUego80oGB2-uPK7aUTmv62wry/view?usp=drivesdk | https://info.neurocaregroup.com/hubfs/neuroCare_May_2021/pdf/pb_dcsp_en.pdf | SCR_015520 | 2026-08-01 12:05:16 | 7 | |||||||
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BRAHMS Resource Report Resource Website 10+ mentions |
BRAHMS (RRID:SCR_015642) | software resource | Simulation software that runs network simulations where the network is specified in its own format called SystemML. The components of the network can be implemented in C, C++, Python or Matlab and are used in SpineML_2_BRAHMS to provide a simulation back-end for SpineML models. | neural network, simulation, modeling software, spineml, systemml, c, c++, python, matlab | is used by: SpineML_2_BRAHMS | DOI:10.1016/j.aei.2009.08.002 | Free, Available for download | http://brahms.sourceforge.net/home/ | SCR_015642 | 2026-08-01 12:05:26 | 19 | ||||||||
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Neuroscan SynAmps RT 64-channel Amplifier Resource Report Resource Website 1+ mentions |
Neuroscan SynAmps RT 64-channel Amplifier (RRID:SCR_015818) | resource | Equipment that is an EEG signal amplifier for 64-channel montages. It is suitable for recording data from high sampling rate (20,000 Hz) Auditory Brain Stem recordings and Spike Spindles to true DC recordings of CNV and P300. | eeg, signal amplifier, signal amplification, 64 channel, neuroimaging, hardware, instrument, equipment | Commercially available, Available for purchase | SCR_015818 | 2026-08-01 12:05:20 | 6 | |||||||||||
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Sigma: Millicell Cell Culture Inserts Resource Report Resource Website 1+ mentions |
Sigma: Millicell Cell Culture Inserts (RRID:SCR_015799) | instrument resource | Equipment that provides physical support for cell cultures. These cell culture inserts feature attachment and suspension cells that can access media from both their apical and basolateral sides. | cell culture, culture insert, hardware, attachment, suspension cell, apical side, basolateral side, instrument, equipment | Commercially available, Available for purchase | https://drive.google.com/file/d/1iKvbwq8VXv1PtD0ItetDiDk8tUv0RwlR/view?usp=drivesdk | https://www.emdmillipore.com/US/en/product/Millicell-Cell-Culture-Inserts, MM_NF-C10504?amp%3Bbd=1&bd=1#documentation | http://www.merckmillipore.com/ES/es/product/Millicell-Cell-Culture-Inserts, MM_NF-C10504?ReferrerURL=https%3A%2F%2Fwww.google.es%2F&bd=1 | SCR_015799 | Millicell® Cell Culture Inserts | 2026-08-01 12:05:29 | 9 | |||||||
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Real time localization system for autonomous robots Benchmark Dataset Resource Report Resource Website |
Real time localization system for autonomous robots Benchmark Dataset (RRID:SCR_015756) | Dataset that can be used to analyze cyber-attacks to an indoor real time localization system for autonomous robots. Data have been gathered in an indoor mock-up apartment using an autonomous robot with an on-board Real Time Location System (RTLS). | benchmark, neural network, machine learning, autonomous robot, real time location system, rtls, training data, cyber-attack | is related to: Range-based people tracker classifiers Benchmark Dataset | Freely available, Available for download | SCR_015756 | Benchmark dataset for analysis of cyber-attacks to an indoor real time localization system for autonomous robots | 2026-08-01 12:05:20 | 0 | ||||||||||
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Antha Resource Report Resource Website |
Antha (RRID:SCR_015761) | software resource | Software language for methods to simplify protocols into reusable components that can be exchanged or removed to produce simple, reproducible, and scalable workflows. It allows users to develop, execute, and analyse biological experiments faster, while also introducing standardization and modularity to bioengineering. | software language, programming language, method, protocol, bioengineering, standardization, robot, robotics software | Freely available | https://github.com/antha-lang/antha | SCR_015761 | Synthace Antha | 2026-08-01 12:05:19 | 0 | |||||||||
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Autoprotocol Resource Report Resource Website 1+ mentions |
Autoprotocol (RRID:SCR_015764) | software resource | Language standard for automating English language protocols. Autoprotocol specifies experimental protocols for biological research as a way to define experiments that could be run over the internet on remote robotic automation. | language, protocol, research publication, automation, translation | Freely available | SCR_015764 | BioIO | 2026-08-01 12:05:29 | 3 | ||||||||||
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Olympus IX-53 Resource Report Resource Website 1+ mentions |
Olympus IX-53 (RRID:SCR_015801) | IX-53 | resource | Equipment that is a microscope for routine inverted microscopic analysis. Its features include pre-centered phase contrast, relief contrast, and UIS2 DIC optics for visualization across all magnifications for both thin and thick specimens. | microscope, inverted microscope, routine inverted microscopic analysis, phase contrast, relief contrast, uis2 dic optic, hardware, instrument, equipment | is provided by: Olympus | Commercially available, Available for purchase | SCR_015801 | IX53, IX53 Inverted Microscope, Olympus IX53 Inverted Microscope | 2026-08-01 12:05:21 | 2 | ||||||||
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CED: Power1401 Resource Report Resource Website 10+ mentions |
CED: Power1401 (RRID:SCR_016040) | instrument resource | Data acquisition interface from Cambridge Electronic Design Limited. Works with Spike2 to provide continuous acquisition tasks. Records waveform data, digital and marker information, and can generate waveform and digital outputs simultaneously for real-time, multi-tasking experiment control. | Cambridge Electronic Design Limited, equipment, hardware, instrument, USEDit |
is listed by: USEDit works with: Spike2 Software |
Restricted | https://drive.google.com/file/d/1fl3Sbk3t-vRgPgDNMBbZQuLSBIdJUPsO/view?usp=drivesdk | SCR_017282 | SCR_016040 | , POWER1401-3 Data Acquisition Interface, Power1401-3A, CED Power1401 3A | 2026-08-01 12:05:34 | 12 | |||||||
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Durham University; Durham; England Resource Report Resource Website |
Durham University; Durham; England (RRID:SCR_016079) | university | University in Durham, England. | university, durham, england |
is related to: VasoTracker is parent organization of: Cassiopee |
ISNI:0000 0000 8700 0572, grid.8250.f, Wikidata:Q16848806, Crossref funder ID:501100001314 | https://ror.org/01v29qb04 | SCR_016079 | 2026-08-01 12:05:35 | 0 | |||||||||
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Bpod Resource Report Resource Website 10+ mentions |
Bpod (RRID:SCR_015943) | software resource | Software for a measurement and control system for behavior research, most often used to implement operant (Go/NoGo, 2AFC) tasks. This software controls a hierarchy of hardware modules, each powered by an Arduino-programmable microcontroller. | sanworks, rodent, behavior, experiment, control, software, hardware, arduino, measurement | is listed by: OpenBehavior | Open source, Free, Available for download | https://github.com/sanworks/Bpod | SCR_015943 | 2026-08-01 12:05:32 | 37 | |||||||||
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Center for Cell Analysis and Modeling Resource Report Resource Website |
Center for Cell Analysis and Modeling (RRID:SCR_013656) | data computation service | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 26,2023. CCAM is one of five National Technology Centers for Networks and Pathways, NTCNP, funded throught the NIH Technology Center for Networks and Pathways, TCNP. CCAM integrates new microscope technologies for making quantitative in vivo live cell measurements with new physical formulations and computational tools that will produce spatially realistic quantitative models of intracellular dynamics. :The overarching rationale for CCAMs research as a TCNP is that polarity in networks and pathways is determined by the spatial organization, subcellular distribution, dynamic behavior, interactions and functions of specific molecules within the cell. To investigate these relationships, we use a tripartite approach described as: :1) Measure - develop new tools for measuring spatially resolved dynamic behavior of molecules in cells, :2) Model - develop new methods for spatial modeling of biological systems. :3) Manipulate - develop new techniques for manipulating the spatial distribution of molecules in living cells. :Microscopy contrast enhancement protocol, biophotonics, subcellular : | has parent organization: University of Connecticut; Connecticut; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00528 | SCR_013656 | CCAM - Computational Facility | 2026-08-01 12:04:52 | 0 | |||||||||
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Faculty for Undergraduate Neuroscience Resource Report Resource Website 1+ mentions |
Faculty for Undergraduate Neuroscience (RRID:SCR_013536) | training resource | FUN is an international organization that is focused on neuroscience education and research at the undergraduate level. FUNs members and supporters include businesses and organizations; private liberal arts colleges, state and research university departments and programs; and individual faculty and students, all sharing a common interest in undergraduate neuroscience. | nif-0000-00466 | SCR_013536 | FUN | 2026-08-01 12:04:49 | 1 |
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