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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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EDLUT Resource Report Resource Website 1+ mentions |
EDLUT (RRID:SCR_014261) | software application, simulation software, software resource | Simulation software which creates spiking cell models using either a time-driven strategy or an event-driven strategy based on look-up tables. EDLUT serves as a tool for studying the computational principles of neural systems to reveal how different functionalities of the brain and central nervous system are based on cell and topology properties. | spiking neural network, simulation software, | has parent organization: University of Granada; Granada; Spain | DOI:10.1162/neco.2006.18.12.2959 | Open source, Available for download | SCR_014261 | EDLUT: Event-Driven simulator based on Look-Up-Tables, Event-Driven simulator based on Look-Up-Tables | 2026-08-14 09:27:04 | 4 | ||||||||
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UC Davis Genome Center Labs and Facilities Resource Report Resource Website 1+ mentions |
UC Davis Genome Center Labs and Facilities (RRID:SCR_012480) | UCD Genome Center Labs & Facilities, UCD Genome Center Labs and Facilities | access service resource, portal, training service resource, data or information resource, service resource, organization portal, core facility | Genome Center uses technologies to understand how heritable genetic information of diverse organisms functions in health and disease. Provides research facilities, service cores, and staff for genomics research and training. Core facilities for Bioinformatics,DNA Technologies and Expression Analysis, Metabolomics, Proteomics,TILLING Core,Yeast One Hybrid Services Core. | Heritable, genetic, information, diverse, organism, function, health, disease, core, facility, service, genomic, training, |
is listed by: ScienceExchange is related to: University of California at Davis Genome Center Proteomics Core Facility has parent organization: University of California at Davis; California; USA |
SciEx_227, SciEx_756, SCR_012659 | https://genomecenter.ucdavis.edu/ | http://www.scienceexchange.com/facilities/uc-davis-genome-center-uc-davis | SCR_012480 | University of California Davis Genome Center Labs and Facilities, UC Davis Genome Center Labs & Facilities, University of California Davis Genome Center Labs & Facilities | 2026-08-14 09:26:32 | 3 | ||||||
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Aptagen Resource Report Resource Website |
Aptagen (RRID:SCR_012607) | Aptagen | service resource, commercial organization, access service resource, core facility | Supplier of aptamers, RNA or DNA that binds with high affinity and specificity to targets such as small organics, peptides, proteins, cells, and tissues. Unlike antibodies, some aptamers exhibit stereoselectivity. In addition, aptamers have been generated that exhibit greater than 10,000-fold binding affinity for theophylline over caffeine, which differ from one another in structure by only a single methyl group. | is listed by: ScienceExchange | SciEx_534 | SCR_012607 | 2026-08-14 09:26:30 | 0 | ||||||||||
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University of North Carolina at Chapel Hill Labs and Facilities Resource Report Resource Website |
University of North Carolina at Chapel Hill Labs and Facilities (RRID:SCR_012447) | UNC Labs and Facilities, UNC Labs & Facilities | service resource, access service resource, core facility | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 16,2024. Portal, Core facility. |
is listed by: ScienceExchange is related to: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Diet and Physical Activity Core has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_1400 | SCR_012447 | University of North Carolina at Chapel Hill Labs & Facilities | 2026-08-14 09:26:31 | 0 | ||||||||
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Biotium inc Resource Report Resource Website 10+ mentions |
Biotium inc (RRID:SCR_013538) | commercial organization, reagent supplier, antibody supplier, material resource | An Antibody supplier | nlx_152313 | SCR_013538 | 2026-08-14 09:26:57 | 13 | ||||||||||||
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Ascidian Network for InSitu Expression and Embryological Data Resource Report Resource Website 50+ mentions |
Ascidian Network for InSitu Expression and Embryological Data (RRID:SCR_013030) | ANISEED | database, data repository, storage service resource, data or information resource, software resource, service resource |
Database of ascidian embryonic development at the level of the genome (cis-regulatory sequences, gene expression, protein annotation), of the cell (morphology, fate, induction, lineage) or of the whole embryo (anatomy, morphogenesis). Currently, four organism models are described in Aniseed: Ciona intestinalis, Ciona savignyi, Halocynthia roretzi and Phallusia mammillata. This version supports four sets of Ciona intestinalis transcript models: JGI v1.0, KyotoGrail 2005, KH and ENSEMBL, all functionally annotated, and grouped into Aniseedv3.0 gene models. Users can explore their expression profiles during normal or manipulated development, access validated cis-regulatory regions, get the molecular tools used to assay gene function, or all articles related to the function, or regulation of a given gene. Known transcriptional regulators and targets are listed for each gene, as are the gene regulatory networks acting in individual anatomical territories. ANISEED is a community tool, and the direct involvement of external contributors is important to optimize the quality of the submitted data. Virtual embryo: The 3D Virtual embryo is available to download in the download section of the website. |
embryology, embryo, gene, genome, anatomy, cis-regulatory, development, morphogenesis, morphology, protein, molecular neuroanatomy resource, cis-regulatory sequence, gene expression, protein annotation, cell, expression profile, function, regulation, blast, visualization, data analysis service, clone, FASEB list | CNRS ; French Ministry of Research ; Marseille-Nice Genopole ; ARC ; European Network QLK3-CT-2001-01890 |
PMID:20647237 | nif-0000-10155 | http://crfb.univ-mrs.fr/aniseed/index.php | SCR_013030 | Aniseed database | 2026-08-14 09:26:39 | 63 | ||||||
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TopQ BioSystems Resource Report Resource Website |
TopQ BioSystems (RRID:SCR_012424) | TopQ BioSystems | service resource, commercial organization, access service resource, core facility | Contract research organization that performs IHC detection of antigens in tissue and cell samples. Some target antigens are difficult-to-detect because of various reasons. We offer the following quality IHC services with the primary antibodies provided by customers: -Primary antibody selections -Formalin fixed paraffin embedded (FFPE) tissue sample sectioning -Processing condition optimizations -IHC single or double staining (colorimetric or fluorescent) FFPE slides TMA slides -IHC data analysis | immunohistochemistry | is listed by: ScienceExchange | SciEx_13215 | SCR_012424 | TopQ BioSystems Inc. | 2026-08-14 09:26:31 | 0 | ||||||||
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Enzymatics Resource Report Resource Website |
Enzymatics (RRID:SCR_012545) | Enzymatics | service resource, commercial organization, access service resource, core facility | Enzymatics is an independent, ISO 13485:2003 certified OEM manufacturer of enzymes that brings to the marketplace a unique, quality oriented, and customer focused approach to protein production. The company was founded in 2006 to specifically address the needs of commercial entities engaged in the development, manufacture, and distribution of platforms dedicated to nucleic acid identification. Enzymes are critical to the performance of these applications and the industry''s relentless pursuit of higher performance emphasizes the need for analytical reagent purity and absolute production consistency. Operating from the perspective that we are a manufacturing division of our customer, Enzymatics consistently delivers the highest quality and value enzymes, leveraging them to drive customer success via a partnership business model; and our tremendous success confirms the need in the marketplace for a dedicated partner in the realm of enzyme technologies. | is listed by: ScienceExchange | SciEx_4560 | SCR_012545 | 2026-08-14 09:26:33 | 0 | ||||||||||
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CLC Genomics Workbench Resource Report Resource Website 100+ mentions |
CLC Genomics Workbench (RRID:SCR_011853) | data processing software, software application, data analysis software, software resource, data visualization software | Commercially available software for visualization and analysis of next generation sequencing data. Used for viewing, exploring, and sharing of NGS analysis results. Complete toolkit for genomics, transcriptomics, epigenomics, and metagenomics in one program. | ngs, next, generation, sequencing, gene, rna, visualisation, analysis |
is listed by: OMICtools is listed by: SoftCite works with: CLC Genomics Server |
Restricted | SCR_016245, OMICS_01124 | SCR_011853 | 2026-08-14 09:26:24 | 187 | |||||||||
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CaresBio Laboratory Resource Report Resource Website 1+ mentions |
CaresBio Laboratory (RRID:SCR_012393) | CBL | service resource, commercial organization, access service resource, core facility | CaresBio Laboratory (CBL) is a contract research organization, serving as a translational link with the one stop service approach to close the gaps between basic and clinical sciences for biomedical science community. We are serving academic laboratories, CROs, biotechnology and pharmaceutical companies and research organizations by providing high quality and cost effective pre-clinical and clinical research services. If you are doing biomarker and or drug discovery and development; therapeutics and translational research along with the applications of genomics and proteomics study; data validation and analysis; histopathology, immunohistochemistry, pathology or other immunostaining, imaging; histomorphometry, image analysis; small animal imaging; screening, efficacy and toxicity testing of your candidate compounds. We also provide biostatistics analysis of pre-clinical and or clinical data, data base developments or any subcategories of these fields. We do assay developments and provide customized assays to match your needs. | is listed by: ScienceExchange | SciEx_12995 | SCR_012393 | CaresBio Laboratory LLC | 2026-08-14 09:26:26 | 2 | |||||||||
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Centers for Diabetes Translation Research Resource Report Resource Website 1+ mentions |
Centers for Diabetes Translation Research (RRID:SCR_015149) | topical portal, portal, data or information resource, resource, disease-related portal, organization portal | Centers that are part of an integrated program whose cores support and enhance diabetes type II translation research. The CDTRs aim to enhance the efficiency, productivity, effectiveness and multidisciplinary nature of diabetes translation research. | diabetes type ii, diabetes research, translation |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Vanderbilt Center for Diabetes Translation Research is affiliated with: New York Regional Center for Diabetes Translation Research is affiliated with: Chicago Center for Diabetes Translation Research is affiliated with: Georgia Center for Diabetes Translation Research is affiliated with: Michigan Center for Diabetes Translational Research is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Chicago Center for Diabetes Translation Research has organization facet: New York Regional Center for Diabetes Translation Research has organization facet: Georgia Center for Diabetes Translation Research has organization facet: Health Delivery Systems Center for Diabetes Translational Research has organization facet: Michigan Center for Diabetes Translational Research has organization facet: Vanderbilt Center for Diabetes Translation Research has organization facet: Washington University Center for Diabetes Translation Research |
Diabetes | NIDDK P30RFA-DK15-003 | Available to the research community | SCR_015149 | 2026-08-14 09:27:07 | 1 | ||||||||
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Linkage Disequilibrium Analyses for Quantitative and Discrete Traits Resource Report Resource Website 1+ mentions |
Linkage Disequilibrium Analyses for Quantitative and Discrete Traits (RRID:SCR_013365) | data or information resource, database, software application, software resource | How is association mapping going to help me find genes? During the past decade, the genes for a large number of rare mendelian traits have been identified. However, traditional linkage analyses lack power and precision when applied to complex disease. Association mapping, which compares the effects of different chromosomal variants, may be more successful at identifying genes of small effect. How does QTDT help association mapping? Association mapping can produce misleading results when the study population is not homogeneous, but includes individuals with different genetic backgrounds. Family based association tests, commonly referred to as TDTs (Transmission Disequilibrium Tests), do not produce misleading results in these circumstances. QTDT can use all the information in a pedigree to construct powerful tests of association that are robust in the presence of stratification. What does the Q stant for ? Q stands for Quantitative. Quantitative traits provide effective descriptions of many complex diseases, including asthma. For many of these conditions, all or nothing definitions of disease are arbitrary and unsatisfactory. QTDT incorporates variance components methodology in the analysis of family data and includes exact estimation of p-values for analysis of small samples and non-normal data. The QTDT abbreviation (for Quantitative Transmission Disequilibrium Tests) was first used by David Allison in his 1997 paper. This research was supported in part by the intramural program of the National Eye Institute and by National Institutes of Health Grants EY016862, EY007758, EY09859, EY012118, P30-EY014801, EY-014458, EY014467, HL084729, and HG002651, by the Foundation Fighting Blindness, the Macula Vision Research Foundation, the American Health Assistance Foundation, Research to Prevent Blindness, the Pew Charitable Trusts, the Mayo Clinic Foundation, the Casey Macular Degeneration Center Fund, the Marion W. and Edward F. Knight AMD Fund, the Harold and Pauline Price Foundation, National Genotyping Centre of Spain, and the Elmer and Sylvia Sramek Foundation. The Center for Inherited Disease Research, fully funded through a federal contract (HHSN268200782096C) from National Institutes of Health to | has parent organization: University of Michigan; Ann Arbor; USA | nif-0000-31385 | SCR_013365 | QTDT | 2026-08-14 09:26:43 | 7 | ||||||||||
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Integrated Digitized Biocollections Resource Report Resource Website 100+ mentions |
Integrated Digitized Biocollections (RRID:SCR_014336) | iDigBio | storage service resource, service resource, data repository | iDigBio is the National Resource for Advancing Digitization of Biodiversity Collections (ADBC) funded by the National Science Foundation. Through ADBC, data and images for millions of biological specimens are being made available in electronic format for the research community, government agencies, students, educators, and the general public. | biospecimen | NSF Cooperative Agreement EF-1115210 | Open | r3d100011126 | https://doi.org/10.17616/R3J90V | SCR_014336 | 2026-08-14 09:27:05 | 116 | |||||||
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GeneMapper Resource Report Resource Website 5000+ mentions |
GeneMapper (RRID:SCR_014290) | data processing software, software application, data analysis software, software resource, sequence analysis software | Genotyping software package that provides DNA sizing and quality allele calls for all Applied Biosystems electrophoresis-based genotyping systems. GeneMapper specializes in multiapplication functionality, including amplified fragment length polymorphism, loss of heterozygosity, microsatellite, and SNP genotyping analysis. The software provides remote auto-analysis and command line operation, and allows for multiuser, client-server deployment. | genotyping software, sequence analysis software, multiplication functionality, dna sizing, allele call, electrophoresis genotyping system | is listed by: SoftCite | Restricted | https://www.thermofisher.com/order/catalog/product/de/en/4370784, https://www.thermofisher.com/document-connect/document-connect.html?url=https://assets.thermofisher.com/TFS-Assets%2FLSG%2Fmanuals%2F4476603A.pdf, | https://products.appliedbiosystems.com/ab/en/US/adirect/ab?cmd=catNavigate2&catID=600798&tab=DetailInfo | SCR_014290 | , GeneMapper Software 5, GeneMapper Software 6, GeneMapper Software | 2026-08-14 09:27:04 | 5354 | |||||||
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Barts and The London School of Medicine and Dentistry Labs and Facilities Resource Report Resource Website |
Barts and The London School of Medicine and Dentistry Labs and Facilities (RRID:SCR_012710) | Barts and The London School of Medicine and Dentistry Labs & Facilities | access service resource, portal, data or information resource, service resource, core facility | Barts and The London offers international levels of excellence in research and teaching while serving a population of unrivalled diversity. Through partnership with our linked trusts, notably Barts and The London NHS Trust, and our associated University Hospital Trusts _������������_ Homerton, Newham, Whipps Cross and Queen''''s (Romford) the School''''s research and teaching is informed by an exceptionally wide ranging and stimulating clinical environment. |
is listed by: ScienceExchange is related to: Queen Mary University of London Labs and Facilities is related to: Blizard Institute of Cell and Molecular Science Labs and Facilities has parent organization: Queen Mary University of London; London; United Kingdom |
SciEx_8912 | SCR_012710 | 2026-08-14 09:26:32 | 0 | ||||||||||
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MyBioSource Resource Report Resource Website 100+ mentions |
MyBioSource (RRID:SCR_013493) | commercial organization, reagent supplier, antibody supplier, material resource | An Antibody supplier | nlx_152416 | SCR_013493 | MyBioSource Inc., MyBioSource.com, MyBioSource Inc | 2026-08-14 09:26:57 | 184 | |||||||||||
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HBP: Healthy Brain Project Resource Report Resource Website |
HBP: Healthy Brain Project (RRID:SCR_013137) | HBP | topical portal, research forum portal, portal, data or information resource, disease-related portal | Research forum portal to address brain status by acquiring comprehensive, multimodal data from healthy humans across the lifespan to characterize brain status, assess its change over time, and associate composite descriptors of brain status. Specifically, the measurements are acquired noninvasively by existing neuroimaging technologies (structural MRI, functional MRI, magnetic resonance spectroscopy, diffusion MRI, and magnetoencephalography); in addition, genetic, cognitive, language, and lifestyle data are acquired. Goals: * Derive the Brain Health Index- An integrative assessment of brain status derived from multimodal measurements of brain structure, function, and chemistry. * Continue acquiring data to construct the first-ever databank on brain, cognitive, language and genetic measurements for healthy people across the lifespan. * Provide a novel and unique dataset by which to: characterize brain status, assess its change over time, and associate it with genetic makeup, cognitive function, and language abilities. * Forecast future brain health and disease based on current measurements and guide physicians towards new interventions and evaluate interventions as they develop. * Extend to siblings and other family members to further assess the genetic influences and inheritability. | cognition, language, genetic, cognitive, brain, structure, function, longitudinal, multimodal, neuroimaging, adult human, late adult human, neurological exam, neuropsychological exam, cognitive assessment, structured interview, questionnaire, mental health status, structural mri, fmri, mr spectroscopy, diffusion mri, meg, dna, genetic assessment, montreal cognitive assessment, 3ms, mmse, language assessment, lifestyle, controlled oral word association test | has parent organization: University of Minnesota Twin Cities; Minnesota; USA | Aging, Healthy | nlx_153925 | SCR_013137 | Healthy Brain Project, Minnesota Women Healthy Brain Project, Women Healthy Brain Project, Minnesota Healthy Brain Project | 2026-08-14 09:26:41 | 0 | |||||||
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AmplifX Resource Report Resource Website 50+ mentions |
AmplifX (RRID:SCR_014465) | data processing software, software application, data analysis software, software resource | A software for managing, testing, and drawing primers. The software can locate primers for target sequences, calculate the quality score, predict amplified fragments and dimers, and create graphic representations of the primers. | primer design, target sequences, amplification, graphic representation, data analysis software | SCR_014465 | 2026-08-14 09:26:58 | 96 | ||||||||||||
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Cytoskeleton Resource Report Resource Website 1000+ mentions |
Cytoskeleton (RRID:SCR_013532) | commercial organization, reagent supplier, antibody supplier, material resource | An Antibody supplier | nlx_152338 | SCR_013532 | Cytoskeleton inc. | 2026-08-14 09:26:45 | 2691 | |||||||||||
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Scaffold Proteome Software Resource Report Resource Website 100+ mentions |
Scaffold Proteome Software (RRID:SCR_014345) | data processing software, software application, data analysis software, software resource | Software for MS/MS proteomic experiments to compare samples, identify biological relevance, and identify isoforms and protein PTMs. These proteins can be classified based on molecular function or organelle. Users can investigate spectrum details and counts, as well as use high through-put batch processing. Tutorials and a free trial are available through the main site., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | ms/ms, proteome, isoform, protein ptm, spectrum, mass spectrometry | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014345 | Scaffold | 2026-08-14 09:27:05 | 116 |
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