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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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StarDist Resource Report Resource Website 10+ mentions |
StarDist (RRID:SCR_027715) | software application, software resource, source code | Software application for object detection with Star-convex Shapes. Used for phase-contrast cell images. | object detection, Star-convex Shapes, phase-contrast cell images, | Free, Available for download, Freely available | https://github.com/stardist/stardist/ | SCR_027715 | 2026-08-14 09:29:38 | 11 | ||||||||||
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5PSeq Explorer Resource Report Resource Website 1+ mentions |
5PSeq Explorer (RRID:SCR_027718) | data access protocol, software resource, data or information resource, web service | Web-based platform for interactive exploration of ribosome dynamics derived from 5′P mRNA degradome sequencing (5PSeq) data. Focused on changes in ribosome dynamics associated to mRNA decay that in some cases can be obscured in conventional ribosome profiling data. | ribosome dynamics, mRNA decay, 5PSeq | Swedish Research Council VR 2021-06112; 2022-05272 2023-02026 and 2024-03210; Wallenberg Academy Fellowship 2021.0167; Karolinska Institutet SciLifeLab; SFO KID and KI funds |
Free, Freely available | https://hub.docker.com/r/stevensirene/fivepseq-explorer | SCR_027718 | fivepseq-explorer | 2026-08-14 09:29:38 | 1 | ||||||||
|
OncodriveCLUSTL Resource Report Resource Website 1+ mentions |
OncodriveCLUSTL (RRID:SCR_027730) | software application, software resource | Software application to detect significant clustering signals across genomic regions. Sequence-based clustering method to identify cancer drivers. | Cancer Genes, SNV, indel, sequence-based clustering, identify cancer drivers, | PMID:31369060 | Free, Freely available | SCR_027730 | 2026-08-14 09:29:38 | 2 | ||||||||||
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OncodriveFML Resource Report Resource Website 10+ mentions |
OncodriveFML (RRID:SCR_027731) | software application, software resource | Software tool that estimates accumulated functional impact bias of somatic mutations in any genomic region of interest based on local simulation of the mutational process affecting it. | Cancer Genes, SNV, indel, estimate accumulated functional impact bias, somatic mutations in any genomic region, | Free, Freely available | SCR_027731 | 2026-08-14 09:29:57 | 11 | |||||||||||
|
IntOGen Resource Report Resource Website 10+ mentions |
IntOGen (RRID:SCR_027727) | source code, software application, software resource | Software tool for automatic and comprehensive knowledge extraction based on mutational data from sequenced tumor samples from patients. Summarizes somatic mutations, genes and pathways involved in tumorigenesis. | Cancer Genes, SNV, indel, knowledge extraction based on mutational data, sequenced tumor samples from patients data, | PMID:24037244 | Free, Available for download, Freely available | https://bitbucket.org/intogen/intogen-plus/src/master | SCR_027727 | , Intogen Plus, IntOGen-mutations platform | 2026-08-14 09:29:38 | 48 | ||||||||
|
HRDetect Resource Report Resource Website 1+ mentions |
HRDetect (RRID:SCR_027726) | source code, software application, software resource | Software tool for detection and analysis of homologous recombination events. | homologous recombination, detection and analysis of homologous recombination events, | Free, Available for download, Freely available | SCR_027726 | 2026-08-14 09:29:49 | 2 | |||||||||||
|
MutPanningV2 Resource Report Resource Website 1+ mentions |
MutPanningV2 (RRID:SCR_027729) | source code, software application, software resource | Software tool designed to detect rare cancer driver genes from aggregated whole-exome sequencing data. | Cancer Genes, SNV, indel, detect rare cancer driver genes, aggregated whole-exome sequencing data, | PMID:32015527 | Free, Available for download, Freely available | SCR_027729 | MutPanning | 2026-08-14 09:29:49 | 1 | |||||||||
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mSings Resource Report Resource Website 1+ mentions |
mSings (RRID:SCR_027728) | source code, software application, software resource | Software tool for detecting microsatellite instability by next-generation sequencing. | microsatellite marker, next-generation sequencing, | PMID:24987110 | Free, Available for download, Freely available, | SCR_027728 | 2026-08-14 09:29:57 | 4 | ||||||||||
|
neuropythy Resource Report Resource Website 1+ mentions |
neuropythy (RRID:SCR_027787) | software toolkit, software resource, source code, software library | Software neuroscience library for Python, intended to complement the existing nibabel library. Can automatic download data and interpret them into Python data structures. | Python, complement nibabel library, can automatic download data and interpret them into Python data structures, | NEI R00 EY022116; NIMH R01 MH111417; NEI R01 EY027964; NEI R01 EY027401 |
PMID:30520736 | Free, Available for download, Freely available | https://hub.docker.com/r/nben/neuropythy | SCR_027787 | 2026-08-14 09:29:58 | 4 | ||||||||
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Icahn School of Medicine at Mount Sinai Flow Cytometry CoRE Core Facility Resource Report Resource Website 1+ mentions |
Icahn School of Medicine at Mount Sinai Flow Cytometry CoRE Core Facility (RRID:SCR_027701) | service resource, access service resource, core facility | Situated within the Icahn School of Medicine at Mount Sinai, our CoRE provides all members of the Mount Sinai Health System community with the instrumentation, expertise, and education required to incorporate flow cytometry and cell sorting into any research project. | ABRF | ABRF_5663 | https://https://coremarketplace.org/?FacilityID=5663&citation=1 | SCR_027701 | Flow Cytometry CoRE | 2026-08-14 09:29:48 | 1 | |||||||||
|
University of Cologne Center for Genomics (CCG) Core Facility Resource Report Resource Website 1+ mentions |
University of Cologne Center for Genomics (CCG) Core Facility (RRID:SCR_027822) | service resource, access service resource, core facility | Represents central facility and does not operate for profit, engaging in academic research collaborations and service provision on collaborative basis. Provides infrastructure for all kinds of sequencing, gene mapping and whole genome association studies in complex diseases as well as the validation of copy number variations. | ABRF, sequencing, gene mapping, whole genome association studies, |
is listed by: ABRF CoreMarketplace has parent organization: University of Cologne; Cologne; Germany |
Restricted | ABRF_5714 | https://coremarketplace.org/RRID:SCR_027822/?citation=1 | SCR_027822 | , University of Cologne Center for Genomics (CCG), Cologne Center for Genomics (CCG) | 2026-08-14 09:29:39 | 1 | |||||||
|
Memorial Sloan Kettering Cancer Center Biostatistics Core Facility Resource Report Resource Website 1+ mentions |
Memorial Sloan Kettering Cancer Center Biostatistics Core Facility (RRID:SCR_027821) | service resource, access service resource, core facility | Core provides expertise on study design and statistical analysis. Devoted to developing and understanding ways to derive scientific inferences from quantitative data and to developing methods for achieving this aim. The staff are highly trained in this field and experienced in all of the specialized areas of statistical techniques including clinical trials methodology, survival analysis, epidemiologic methods, analysis of genomics data, statistical genetics, methods for diagnostic medicine, health services research, survivorship, evidence-based medicine and psychometric methods. | ABRF, study design, statistical analysis, clinical trials methodology, survival analysis, epidemiologic methods, analysis of genomics data, statistical genetics, methods for diagnostic medicine, health services research, survivorship, evidence-based medicine, psychometric methods, |
is listed by: ABRF CoreMarketplace has parent organization: Memorial Sloan Kettering Cancer Center |
ABRF_5713 | https://coremarketplace.org/RRID:SCR_027821/?citation=1 | SCR_027821 | 2026-08-14 09:29:51 | 4 | |||||||||
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NIH Brain Development Cohorts (NBDC) Data Hub Resource Report Resource Website 10+ mentions |
NIH Brain Development Cohorts (NBDC) Data Hub (RRID:SCR_027710) | database, data or information resource | Data platform providing centralized and secure access to rich, longitudinal brain, behavioral, and genomic data from both the Adolescent Brain Cognitive Development (ABCD) and the HEALthy Brain and Child Development (HBCD) Studies. By bringing together data from both studies, the NBDC Data Hub facilitates integrative research on early life and adolescent development, helping researchers explore developmental trajectories across the lifespan. | longitudinal brain data, behavioral data, genomic data, Adolescent Brain Cognitive Development, HEALthy Brain and Child Development, | Restricted | SCR_027710 | 2026-08-14 09:29:48 | 18 | |||||||||||
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LIANA+ Resource Report Resource Website 1+ mentions |
LIANA+ (RRID:SCR_027830) | source code, software application, software resource | Software framework that adapts and extends existing methods and knowledge to study cell-cell communication in single-cell, spatially-resolved, and multi-modal omics data. All-in-one framework for cell-cell communication inference. | framework for cell-cell communication, cell-cell communication inference, | European Union’s Horizon 2020 | PMID:39223377 | https://github.com/saezlab/liana-py | SCR_027830 | 2026-08-14 09:29:51 | 3 | |||||||||
|
Functional Resource Report Resource Website 10+ mentions |
Functional (RRID:SCR_027832) | source code, software application, software resource | Software application for vendor-neutral, open-source acquisition and reconstruction protocols for fully harmonized multi-site functional MRI studies. | acquisition and reconstruction protocols, harmonized multi-site functional MRI studies, functional MRI, | Free, Available for download, Freely available | SCR_027832 | 2026-08-14 09:29:39 | 14 | |||||||||||
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Michigan State University Center for Advanced Microscopy Core Facility Resource Report Resource Website 1+ mentions |
Michigan State University Center for Advanced Microscopy Core Facility (RRID:SCR_027702) | service resource, access service resource, core facility | Core provides instruction and access to scanning electron microscopes, transmission electron microscopes, laser capture microscopes, and confocal laser scanning microscopes. CAM staff members help with microscopes and microscopy analysis. | electron microscopes, transmission electron microscopes, laser capture microscopes, confocal laser scanning microscopes, microscopy |
is listed by: ABRF CoreMarketplace has parent organization: Michigan State University; Michigan; USA |
Open | ABRF_5664 | https://coremarketplace.org/RRID:SCR_027702/?citation=1 | SCR_027702 | 2026-08-14 09:29:38 | 4 | ||||||||
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Tufts University Genomics Core Facility Resource Report Resource Website 1+ mentions |
Tufts University Genomics Core Facility (RRID:SCR_027708) | service resource, access service resource, core facility | Core provides protein sequencing services including Next-Generation DNA Sequencing, Peptide Synthesis, Protein Sequencing, and Mass Spectrometry. Provides expert technical and analytical support. | ABRF, protein sequencing services, Next-Generation DNA Sequencing, Peptide Synthesis, Protein Sequencing, Mass Spectrometry, |
is listed by: ABRF CoreMarketplace has parent organization: Tufts University; Massachusetts; USA |
Open | ABRF_5668 | https://coremarketplace.org/RRID:SCR_027708/?citation=1 | SCR_027708 | 2026-08-14 09:29:38 | 1 | ||||||||
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BIDMC Division of Digital Psychiatry LAMP platform Core Facility Resource Report Resource Website 1+ mentions |
BIDMC Division of Digital Psychiatry LAMP platform Core Facility (RRID:SCR_027767) | data or information resource, service resource, access service resource, core facility | Core collects data to capture and consider the real-time lived experiences of patients. Uses open-source digital platform and mobile app for neuropsychiatric research and clinical care, to monitor, support, and improve brain health by collecting real-time data (like location, activity, heart rate via sensors), conducting digital assessments (surveys, cognitive tests), and delivering interventions (meditation, journaling, psychoeducation) to patients and clinicians. It helps study behavioral patterns, track symptoms, and personalize mental health treatment through features organized around Learn, Assess, Manage, and Prevent. | ABRF, study behavioral patterns, track symptoms, personalize mental health treatment, data, neuropsychiatric research and clinical care management platform, run remote smartphone-based research studies, |
is listed by: ABRF CoreMarketplace has parent organization: Harvard Medical School; Massachusetts; USA |
ABRF_3107 | https://coremarketplace.org/?FacilityID=3107, https://docs.lamp.digital/, https://github.com/BIDMCDigitalPsychiatry/LAMP-platform/ | SCR_027767 | mindLAMP, BIDMC mindLAMP, Beth Israel Deaconess Medical Center mindLAMP | 2026-08-14 09:29:50 | 2 | ||||||||
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Austrian NeuroCloud Resource Report Resource Website 1+ mentions |
Austrian NeuroCloud (RRID:SCR_027771) | data or information resource, storage service resource, service resource, data repository | Platform for sustainable research data management in cognitive neuroscience. Secure data storage and integrated tools to support maintenance, reuse, and FAIR-aligned management of neurocognitive research data. Data remains curated, documented, and accessible for the long term, supporting reproducibility and future discovery. | Neuroimaging, MRI 2D image, FAIR-aligned management, research data management, cognitive neuroscience, secure data storage, | Free, Freely available | SCR_027771 | 2026-08-14 09:29:38 | 1 | |||||||||||
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University of Oslo Services for sensitive data (TSD) Resource Report Resource Website 1+ mentions |
University of Oslo Services for sensitive data (TSD) (RRID:SCR_027773) | data repository, project portal, storage service resource, portal, data or information resource, service resource | Platform to collect, store and analyze sensitive research data in secure environment. It comprises secure project area and integrated solution for collecting sensitive data (Nettskjema), accessible by anywhere in the world. | collect data, store data, analyze data, sensitive research data, secure environment, | Free, Freely available | SCR_027773 | Services for sensitive data (TSD) | 2026-08-14 09:29:58 | 2 |
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