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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SMIntegration Resource Report Resource Website 1+ mentions |
SMIntegration (RRID:SCR_027925) | source code, web application, software resource | Software open-source platform for integrated analysis of spatial transcriptomics and metabolomics data. It integrates spatial pattern recognition, differential comparison, network construction, and functional annotation into a unified workflow. Enables to explore gene-metabolite co-regulation mechanisms through an intuitive web interface, revealing spatial heterogeneity in tissue development and disease progression. | integrated analysis, spatial transcriptomics, metabolomics data, spatial pattern recognition, differential comparison, network construction, functional annotation, unified workflow, | Free, Available for download, Freely available | SCR_027925 | Spatial Multi-omics Integration | 2026-08-14 09:29:39 | 1 | ||||||||||
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GLM utilities Resource Report Resource Website 1+ mentions |
GLM utilities (RRID:SCR_027862) | software toolkit, source code, software resource | Software tools for fitting Generalized Linear Models (GLMs) with time dependence (a.k.a. filters). | Generalized Linear Models, fitting Generalized Linear Models, time dependence, | Free, Available for download, Freely available | SCR_027862 | 2026-08-14 09:29:39 | 1 | |||||||||||
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micom Resource Report Resource Website 1+ mentions |
micom (RRID:SCR_027982) | software toolkit, source code, software resource | Software Python package to study microbial communities using metabolic modeling. Metagenome-scale modeling to infer metabolic interactions in the gut microbiota. | Metagenome-Scale Modeling, infer Metabolic Interactions, Gut Microbiota, microbial communities using metabolic modeling, | National Institute of Genomic Medicine | PMID:31964767 | Free, Available for download, Freely available | SCR_027982 | 2026-08-14 09:29:40 | 5 | |||||||||
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Massachusetts General Hospital Brigham Center of Excellence for Molecular Imaging Core Facility Resource Report Resource Website 1+ mentions |
Massachusetts General Hospital Brigham Center of Excellence for Molecular Imaging Core Facility (RRID:SCR_027865) | service resource, access service resource, core facility | Core facility that provides microscopy training, imaging solutions, image processing and analysis services, and consultation. Offers imaging techniques and expertise, including spinning disc confocal microscopy, two-photon confocal microscopy, super resolution microscopy, total internal reflection microscopy, wide field microscopy, fluorescence spectroscopy, photo-manipulation techniques (e.g. FRAP, photoablation, optogenetics, and optical tweezers) and live cell imaging. | ABRF, imaging, microscopy, microscopy training, imaging solutions, image processing, analysis services, consultation |
is listed by: ABRF CoreMarketplace has parent organization: Massachusetts General Hospital |
Restricted | ABRF_5729 | https://coremarketplace.org/RRID:SCR_027865/?citation=1 | SCR_027865 | , Massachusetts General Hospital Brigham Center of Excellence for Molecular Imaging, Mass General Brigham Center of Excellence for Molecular Imaging | 2026-08-14 09:29:39 | 2 | |||||||
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Spectroscopic Imaging, VIsualization, and Computing (SIVIC) Resource Report Resource Website 1+ mentions |
Spectroscopic Imaging, VIsualization, and Computing (SIVIC) (RRID:SCR_027875) | SIVIC | software application, software resource | Software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies. | DICOM MR Spectroscopy Workflows, data processing, data visualization, DICOM MR spectroscopy data, | NCI RO1 CA127612; NCI P01 CA11816; NIBIB P41EB013598 |
PMID:23970895 | Free, Available for download, Freely available | SCR_027875 | 2026-08-14 09:29:59 | 2 | ||||||||
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Exeter Archival Diabetes Biobank (EADB) Resource Report Resource Website 1+ mentions |
Exeter Archival Diabetes Biobank (EADB) (RRID:SCR_027352) | EADB | storage service resource, service resource, material storage repository, biobank | Exeter Archival Diabetes Biobank (EADB), formerly the Alan Foulis collection. The collection is managed by the University of Exeter Medical School, with images from the biobank made accessible via Pancreatlas. Collection of pancreatic tissues, largely from children who died shortly after a type 1 diabetes (T1D) diagnosis. Provides high-quality digital images of historical, formalin-fixed, paraffin-embedded samples. | Exeter Archival Diabetes Biobank (EADB) dataset, pancreatic tissues, type 1 diabetes, digital images, |
is listed by: Pancreatlas has parent organization: University of Exeter; Exeter; United Kingdom works with: Pancreatlas |
Free, Freely available, | SCR_027352 | 2026-08-14 09:29:41 | 1 | |||||||||
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Cornell University Chemistry MS Core Facility Resource Report Resource Website 1+ mentions |
Cornell University Chemistry MS Core Facility (RRID:SCR_028079) | service resource, access service resource, core facility | Core specializes in the analysis of small organic and organometallic analytes. Provides access to mass spectrometers for all. | ABRF, analysis, organic, organometallic, analytes |
is listed by: ABRF CoreMarketplace has parent organization: Cornell University; New York; USA |
Open | ABRF_5812 | https://https://coremarketplace.org/?FacilityID=5812&citation=1 | SCR_028079 | Cornell University Chemistry MS Facility | 2026-08-14 09:29:55 | 1 | |||||||
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Cornell University NMR Core Facility Resource Report Resource Website 1+ mentions |
Cornell University NMR Core Facility (RRID:SCR_028078) | service resource, access service resource, core facility | Facility provides access to nuclear magnetic resonance spectroscopy for all. Houses spectrometers ranging in field strength from 400 to 600 MHz, including two 500 MHz Brukers equipped with nitrogen-cooled Prodigy CryoProbes. New users may operate a particular spectrometer independently once they complete the required training and demonstrate the knowledge required for operating each instrument. | ABRF, nuclear magnetic resonance spectroscopy, |
is listed by: ABRF CoreMarketplace has parent organization: Cornell University; New York; USA |
Open | ABRF_5811 | https://https://coremarketplace.org/?FacilityID=5811&citation=1 | SCR_028078 | Cornell University NMR Facility | 2026-08-14 09:30:01 | 1 | |||||||
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Addis Ababa University Center for Innovative Drug Development and Therapeutic Trials for Africa Core Facility Resource Report Resource Website 1+ mentions |
Addis Ababa University Center for Innovative Drug Development and Therapeutic Trials for Africa Core Facility (RRID:SCR_028125) | CDT-Africa | service resource, access service resource, core facility | World Bank-supported regional center of excellence focused on building capacity for clinical trials, and developing novel vaccines, diagnostics, and therapeutics. Provides training in clinical trials and translational medicine, to foster homegrown health solutions.Training researchers, scientists, and clinical trial staff across Africa in trial management, data management, and scientific writing. | ABRF |
has parent organization: Addis Ababa University; Addis Ababa; Ethiopia has parent organization: African Centers of Excellence |
SCR_028125 | Center for Innovative Drug Development and Therapeutic Trials for Africa (CDT-Africa) | 2026-08-14 09:29:56 | 2 | |||||||||
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DMRcate Resource Report Resource Website 1+ mentions |
DMRcate (RRID:SCR_028007) | software application, software resource | Software application for de novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions. | de novo identification and extraction, differentially methylated regions, human genome, | Free, Available for download, Freely available | SCR_028007 | 2026-08-14 09:29:54 | 2 | |||||||||||
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Washington University in St. Louis Washington University Center for Cellular Imaging Core Facility Resource Report Resource Website 1+ mentions |
Washington University in St. Louis Washington University Center for Cellular Imaging Core Facility (RRID:SCR_028069) | service resource, access service resource, core facility | Core offers access to advanced imaging technologies, expert consultation, training, and collaborative partnerships across the School of Medicine and Washington University research community. Provides access to light and electron microscopy platforms, guidance in experimental design, sample preparation, data acquisition, quantitative image analysis, expertise, and training to enable investigators to explore cellular and tissue architecture across scales. | ABRF, light and electron microscopy platforms, guidance in experimental design, sample preparation, data acquisition, quantitative image analysis, expertise, training |
is listed by: ABRF CoreMarketplace has parent organization: Washington University in St. Louis; Missouri; USA |
Restricted | ABRF_5810 | https://https://coremarketplace.org/?FacilityID=5810&citation=1 | SCR_028069 | Washington University Center for Cellular Imaging (WUCCI) | 2026-08-14 09:29:40 | 1 | |||||||
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Human Brain Variation Project Resource Report Resource Website 1+ mentions |
Human Brain Variation Project (RRID:SCR_028065) | project portal, portal, web service, data access protocol, data or information resource, software resource | Project provides data currently generated with support from the NIH Brain Initiative Cell Atlas Network (BICAN). Broad Institute collaboration supported by the NIH BRAIN Initiative, to create comprehensive atlas of cellular variation in the healthy human brain. It maps data from millions of cells across diverse individuals to understand how brain biology differs, helping researchers distinguish healthy variation from disease states. | Brain, data, healthy human brain, cells, |
is related to: BRAIN Initiative Cell Atlas Network is related to: BRAIN Initiative |
Free, Freely available | SCR_028065 | Human Brain Variation Project (McCarroll, Macosko) | 2026-08-14 09:29:55 | 1 | |||||||||
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AlphaFold3 Resource Report Resource Website 10+ mentions |
AlphaFold3 (RRID:SCR_028034) | software toolkit, source code, software resource | Software package provides implementation of the inference pipeline of AlphaFold 3. | inference pipeline, AlphaFold 3, | Free, Available for download, Freely available | SCR_028034 | 2026-08-14 09:29:54 | 30 | |||||||||||
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CDC Research Data Center Resource Report Resource Website 1+ mentions |
CDC Research Data Center (RRID:SCR_027996) | CDC RDC | access service resource, portal, data or information resource, service resource, organization portal | Secure facility that provides qualified researchers with access to restricted-use, non-public health data. It protects participant confidentiality while allowing analysis of detailed survey data, such as specific geographic locations or sensitive health info. Provides access to restricted data from the National Center for Health Statistics and from other federal government agency surveys and studies. Access is granted only to approved researchers under strict supervision, and all results undergo disclosure review before leaving the RDC. | access to restricted-use, non-public health data, specific geographic locations, sensitive health info, | Restricted | SCR_027996 | , CDC NCHS Research Data Center, CDC National Center for Health Statistics Research Data Center, Centers for Disease Control and Prevention NCHS Research Data Center | 2026-08-14 09:29:40 | 2 | |||||||||
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methylartist Resource Report Resource Website 1+ mentions |
methylartist (RRID:SCR_028164) | software toolkit, source code, software resource | Software tools for parsing and plotting methylation patterns. Used for plotting methylation data in various ways. | plotting methylation data, parsing, plotting, methylation patterns, | Free, Available for download, Freely available | SCR_028164 | 2026-08-14 09:29:41 | 8 | |||||||||||
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Greiner Bio-One Resource Report Resource Website 1+ mentions |
Greiner Bio-One (RRID:SCR_028044) | commercial organization, production service resource, biomaterial manufacture, material service resource, service resource | Global medical technology company specializing in high-quality plastic laboratory products for diagnostics, biotechnology, and pharmaceutical industries. With over 60 years of experience, they produce VACUETTE® blood collection systems, CELLSTAR® cell culture products, and specialized labware for sample storage. | plastic laboratory products, blood collection systems, cell culture products, specialized labware, sample storage, | SCR_028044 | 2026-08-14 09:29:54 | 1 | ||||||||||||
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wgbstools Resource Report Resource Website 1+ mentions |
wgbstools (RRID:SCR_028257) | software toolkit, source code, software resource | Software tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies. | Bisulfite Sequencing data, preserving reads intrinsic dependencies, | Free, Available for download, Freely available | SCR_028257 | 2026-08-14 09:29:42 | 3 | |||||||||||
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PanDepth Resource Report Resource Website 1+ mentions |
PanDepth (RRID:SCR_028256) | source code, software application, software resource | Software tool for calculating sequence depth. | calculating sequence depth, | Free, Available for download, Freely available | SCR_028256 | 2026-08-14 09:29:58 | 3 | |||||||||||
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SCANDAN-DICOM-labelling Resource Report Resource Website 1+ mentions |
SCANDAN-DICOM-labelling (RRID:SCR_028365) | text extraction software, software application, source code, software resource, text-mining software | Software tool for rules for DICOM tag based labelling. Regular expression used during the SCANDAN project to label MRI scans based on DICOM tag. | sequence, MRI, DICOM standard, Text-mining algorithm, Brain | DOI:10.1101/2025.10.21.25338469 | Free, Available for download, Freely available | SCR_028365 | 2026-08-14 09:29:42 | 1 | ||||||||||
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OBS Studio Resource Report Resource Website 10+ mentions |
OBS Studio (RRID:SCR_028179) | source code, software application, software resource | Software used for live streaming and high-quality screen recording on Windows, Mac, and Linux. Allows to capture, mix, and arrange multiple audio/video sources—such as webcams, desktop screens, and games—in real-time to create, broadcast, or record customized video content. Cross-platform screencasting and live streaming software application. | live streaming, screen recording, capture, mix and arrange, audio sources, video source, customized video content, | Free, Available for download, Freely available | https://github.com/obsproject/obs-studio | SCR_028179 | Open Broadcaster Software | 2026-08-14 09:30:02 | 13 |
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