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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Data Browser Resource Report Resource Website 10+ mentions |
Data Browser (RRID:SCR_017561) | data or information resource, portal, organization portal | National research resource to provide interactive views of publicly available All of Us Research Program participant data including electronic health record data, biospecimens, surveys, and other measures taken at time of participant enrollment. Data platform will be open to researchers all over world and show data for groups of de-identified participants. Data is updated periodically. | All of Us Research, program, participant, data, surey, physical, measurement, electronic, health, record | SCR_017561 | 2026-08-05 10:46:48 | 23 | ||||||||||||
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GlyGen Resource Report Resource Website 10+ mentions |
GlyGen (RRID:SCR_023438) | data or information resource, portal, project portal | Data integration and dissemination project for carbohydrate and glycoconjugate related data. Computational and informatics resources for glycoscience. Portal provides user-friendly interface that facilitates exploration of glycoscience data from diverse international bioinformatics resources, including National Center for Biotechnology Information (NCBI), UniProt, Protein Data Bank (PDB), UniCarbKB, and GlyTouCan glycan structure repository. Retrieves information from data sources and integrates and harmonizes this data. Includes knowledge about molecular, biophysical and functional properties of glycans, genes, proteins and lipids organized in pathways and ontologies, plus data related to mutation and expression. | Gly-glycobiology Gen-information, glycobiology, glycans molecular properties, glycans biophysical properties, glycans functional properties properties, glycans, genes, proteins, lipids, pathways and ontologies, data, mutation and expression data, carbohydrate and glycoconjugate related data, | NIGMS 1U01GM125267; NIGMS R24 GM146616 |
PMID:31616925 PMID:32324859 |
Free, Freely available | SCR_023438 | GlyGen Portal | 2026-08-05 10:47:50 | 11 | ||||||||
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GenePath Resource Report Resource Website 10+ mentions |
GenePath (RRID:SCR_007974) | data or information resource, database | GenePath is a web-enabled intelligent assistant for the analysis of genetic data and for discovery of genetic networks. GenePath uses abductive inference to elucidate network constraints and logic to derive consistent networks. Typically, it starts with a set of genetic experiments, uses a set of embedded rules (patterns) to infer relations between genes and outcome, and based on these relations constructs a genetic network. | genetic, data, network | has parent organization: University of Ljubljana; Ljubljana; Slovenia | nif-0000-20848 | SCR_007974 | GenePath | 2026-08-05 10:44:51 | 15 | |||||||||
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GenAge Resource Report Resource Website 100+ mentions |
GenAge (RRID:SCR_010223) | GenAge | data or information resource, database | Collection of annotated and manually curated data of genes related to aging divided into genes related to longevity and/or aging in model organisms (yeast, worms, flies, mice, etc.) and aging related human genes. | collection, curated, data, gene, aging, longevity |
is used by: GEROprotectors has parent organization: Human Ageing Genomic Resources |
Aging | HAGR''s lisense | nlx_156768 | SCR_010223 | GenAge, GenAge Database of Ageing-Related Genes, The Ageing Gene Database, Gene Database | 2026-08-05 10:45:19 | 138 | ||||||
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Alzforum Antibody Directory for Neuroscience Research Resource Report Resource Website |
Alzforum Antibody Directory for Neuroscience Research (RRID:SCR_013601) | data or information resource, database | The Alzheimer Research Forum is the web''s most dynamic scientific community dedicated to understanding Alzheimer''s disease and related disorders. It also contains a database of providers of antibodies directed against several hundred molecules and proteins of relevant to research on Alzheimer and other neurodegenerative diseases. The web site reports on the latest scientific findings, from basic research to clinical trials; creates and maintains public databases of essential research data and reagents, and produces discussion forums to promote debate, speed the dissemination of new ideas, and break down barriers across the numerous disciplines that can contribute to the global effort to cure Alzheimer''s disease. The ARF team of professional science writers and editors, information technology experts, web developers and producers all work closely with our distinguished and diverse Advisory Board to ensure a high-quality of information and services. We very much welcome our readers'' participation in all aspects of the web site. Sponsors: The Alzheimer Research Forum is an independent nonprofit organization. It is supported by grants and individual donations. | alzheimer, antibody, clinical trail, community, data, disease, disorder, molecule, neurodegenerative, protein, reagent, research, science, scientific, technology | has parent organization: Alzheimer's Research Forum | nif-0000-00129 | SCR_013601 | Alzforum Antibody Directory | 2026-08-05 10:46:04 | 0 | |||||||||
|
Brain RNA-Seq Resource Report Resource Website 100+ mentions |
Brain RNA-Seq (RRID:SCR_013736) | data or information resource, database | Database containing RNA-Seq transcriptome and splicing data from glia, neurons, and vascular cells of cerebral cortex. Collection of RNA-Seq transcriptome and splicing data from glia, neurons, and vascular cells of mouse cerebral cortex. RNA-Seq of cell types isolated from mouse and human brain. | RNAseq, transcriptome, splicing, data, glia, neuron vascular, cell, cerebral, cortex, mouse, human, brain, FASEB list | has parent organization: Stanford University; Stanford; California | NIMH R01MH09955501; NINDS R01NS08170301; NIGMS T32GM007365 |
PMID:25186741 PMID:26687838 |
Free, Freely available | SCR_017483 | http://www.brainrnaseq.org/ | SCR_013736 | Barres Brain RNA-Seq | 2026-08-05 10:46:05 | 109 | |||||
|
TheCellMap Resource Report Resource Website 10+ mentions |
TheCellMap (RRID:SCR_018728) | data or information resource, service resource, database | Web accessible database for visualizing and mining global yeast genetic interaction network. Allows users to easily access, visualize, explore, and functionally annotate genetic interactions, or to extract and reorganize sub networks, using data driven network layouts in intuitive and interactive manner. Used for storing and visualizing genetic interactions in S. cerevisiae. | Genetic interactions, genetic network, yeast genetics, synthetic genetic array, network visualization, annotation, data, genetic interaction visualization | has parent organization: University of Toronto; Ontario; Canada | NHGRI R01 HG005853; NHGRI R01 HG005084; Canadian Institutes of Health Research ; NSF DBI 0953881 |
PMID:28325812 | Free, Freely available | SCR_018728 | TheCellMap.org | 2026-08-05 10:47:06 | 34 | |||||||
|
PhenoDB Resource Report Resource Website 1+ mentions |
PhenoDB (RRID:SCR_016551) | data or information resource, database | Database for phenotype genotype associations for humans. Used by clinical researchers to store standardized phenotypic information, diagnosis, and pedigree data and then run analyses on VCF files from individuals, families or cohorts with suspected Mendelian disease. | store, standardized, phenotype, genotype, Mendelian disease, mutation, next, generation, sequencing, data | has parent organization: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA | Mendelian disease | NHGRI | PMID:25684268 | Free, Registration required, Freely available for non commercial users | SCR_016551 | 2026-08-05 10:46:41 | 5 | |||||||
|
Danish Twin Registry Resource Report Resource Website |
Danish Twin Registry (RRID:SCR_017482) | DTR | data or information resource, database | Twin registry to studying causes of cancer, gene inheritance and environment. Contains information on twins born in Denmark. Comprises twins born through more than 125 years. | Twin, cancer, data, gene, environment | Restricted | SCR_017482 | 2026-08-05 10:46:54 | 0 | ||||||||||
|
Diversity Outbred Database Resource Report Resource Website 1+ mentions |
Diversity Outbred Database (RRID:SCR_018180) | data or information resource, database | Database provides access to genotype and phenotype data from experiments with Diversity Outbred mice. Data can be searched by publication, investigator, and data type and can be downloaded in zipped CSV or R/QTL2 formats. Users can download full studies or subset of samples, genotypes, clinical phenotypes and molecular phenotypes including transcript, proteomic, and metabolomic profiling data. | JAX, genetic diversity, genotype data, phenotype data, diversity outbred mice, genotype, clinical phenotype, molecular phenotype, proteomic, metabolomic, data | has parent organization: JAX Mice and Services | Free, Freely available | https://www.jax.org/research-and-faculty/genetic-diversity-initiative/tools-data/diversity-outbred-database | SCR_018180 | 2026-08-05 10:47:00 | 8 | |||||||||
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Codon and Codon-Pair Usage Tables Resource Report Resource Website 1+ mentions |
Codon and Codon-Pair Usage Tables (RRID:SCR_018504) | CoCoPUTs | data or information resource, database | Database includes genomic codon-pair and dinucleotide statistics of all organisms with sequenced genome. Facilitates genetic variation analyses and recombinant gene design. Derived from all available GenBank and RefSeq data. | Codon-pair, codon, nucleotide, gene, genomic codon pair, dinucleotide statistic, sequence, genetic variation, recombinant gene design, data |
is related to: GenBank is related to: RefSeq |
PMID:31029701 | Free, Freely available | SCR_018504 | 2026-08-05 10:47:02 | 5 | ||||||||
|
Database of Antimicrobial Activity and Structure of Peptides Resource Report Resource Website 10+ mentions |
Database of Antimicrobial Activity and Structure of Peptides (RRID:SCR_016600) | DBAASP | data or information resource, database | Collection of manually curated data regarding structure and antimicrobial activity of natural and synthetic peptides. Provides the information and analytical resources to develop antimicrobial compounds with the high therapeutic index. | data, collection, structure, antimicrobial, activity, natural, synthetic, peptide, sequence | NIAID G2102; Shota Rustaveli National Science Foundation FR397718014; International Science and Technology Center |
PMID:26578581 PMID:27060142 |
Free, Freely available | SCR_016600 | DataBase of Antimicrobial Activity and Structure of Peptides, Database of Antimicrobial Activity and Structure of Peptides | 2026-08-05 10:46:41 | 42 | |||||||
|
p300db Resource Report Resource Website 1+ mentions |
p300db (RRID:SCR_017063) | data or information resource, database | Data collection of CBP/p300 regulated acetylome, proteome, and transcriptome in murine embryonic fibroblasts. Composed of Symbol search for quantified acetylation sites, proteins and transcripts abundance in CBP/p300, Domain search for batch query of proteins by specific domain and Conserved sites for acetylation sites that are conserved between mouse and human, and their regulation in KATi treated cells. | data, collection, CBP, p300, regulated, acetylome, proteome, transcriptome, murine, embryonic, fibroblast, domain, protein, acetylation, site, dataset |
is related to: Ensembl is related to: UniProt has parent organization: University of Copenhagen; Copenhagen; Denmark |
Free, Available for download, Freely available | SCR_017063 | 2026-08-05 10:46:47 | 1 | ||||||||||
|
Atlas of Drosophila Development Resource Report Resource Website |
Atlas of Drosophila Development (RRID:SCR_017506) | data or information resource, atlas | Collection of color illustrations that follow main events of embryogenesis and post embryonic development of Drosophila. | Color, illustration, embrogenesis, post, embryonic, development, Drosophila, data | Free, Freely available | SCR_017506 | 2026-08-05 10:46:54 | 0 | |||||||||||
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RegulomeDB Resource Report Resource Website 100+ mentions |
RegulomeDB (RRID:SCR_017905) | data or information resource, service resource, database | Database that annotates SNPs with known and predicted regulatory elements in intergenic regions of H. sapiens genome. Known and predicted regulatory DNA elements include regions of DNAase hypersensitivity, binding sites of transcription factors, and promoter regions that have been biochemically characterized to regulation transcription. Source of these data include public datasets from GEO, ENCODE project, and published literature. | Annotate, SNP, regulatory, DNA, element, intergenic, region, human, genome, sequence, DNAase, hypersensitivity, binding, site, transcription, factor, promoter, region, data, FASEB list | NHGRI U54 HG 004558; Beta Cell Consortium |
PMID:22955989 | Free, Freely available | SCR_017905 | 2026-08-05 10:46:56 | 123 | |||||||||
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CoMeTa Website Resource Report Resource Website 1+ mentions |
CoMeTa Website (RRID:SCR_017357) | CoMeTa | data or information resource, service resource, database | Interactive database of miRNA targets and miRNA-regulated gene networks to integrate expression data from hundreds of cellular and tissue conditions. Website includes CoMeTa corank lists and additional targets for all of human miRNAs, their associated pathways resulting from COOL analysis, and miRNA communities with their corresponding enriched functional categories. Website is searchable by miRNA, target gene, or biological function of interest, and represents unique resource to gain insight into miRNA-controlled gene networks and functions. | Interactive, database, miRNA, target, gene, network, integrate, expression, condition, pathway, functional, data | Italian Telethon Foundation ; AIRC |
PMID:22345618 | Free, Freely available | SCR_017357 | Co-expression Meta-analysis of miRNA Target | 2026-08-05 10:46:50 | 3 | |||||||
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miRTarBase Resource Report Resource Website 100+ mentions |
miRTarBase (RRID:SCR_017355) | data or information resource, database | Web based manually curated experimentally validated database of microRNA-Target interactions. Collection of MTIs data validated experimentally by reporter assays, western blot, or microarray experiments with overexpression or knockdown of miRNAs. | Manually, curated, experimentally, validated, database, microRNA, target, interaction, collection, data, MTI, FASEB list | is listed by: OMICtools | Ministry of Science and Technology ; Taiwan |
PMID:29126174 | Free, Available for download, Freely availabe | http://mirtarbase.mbc.nctu.edu.tw/php/index.php | SCR_017355 | microRNA-Target interactions Base | 2026-08-05 10:46:46 | 321 | ||||||
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ABA Mouse Brain: Atlas Resource Report Resource Website 100+ mentions |
ABA Mouse Brain: Atlas (RRID:SCR_017479) | data or information resource, service resource, database | Genome wide database of gene expression in mouse brain. Genome-wide atlas of gene expression in the adult mouse brain. | Genome, data, gene, expression, mouse, brain |
has parent organization: Allen Institute for Brain Science is provided by: Allen Brain Atlas |
PMID:17151600 | Free, Freely available | SCR_017479 | Allen Brain Atlas: Mouse Brain, , Allen Brain Atlas Mouse Brain: Atlas | 2026-08-05 10:46:51 | 328 | ||||||||
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MitoCarta Resource Report Resource Website 100+ mentions |
MitoCarta (RRID:SCR_018165) | data or information resource, database | Collection of genes encoding proteins with strong support of mitochondrial localization. Inventory of genes encoding mitochondrial-localized proteins and their expression across 14 mouse tissues. Database is based on human and mouse RefSeq proteins that are mapped to NCBI Gene loci. MitoCarta 2.0 inventory provides molecular framework for system-level analysis of mammalian mitochondria. | Gene, protein, mitochondrial protein, protein expression, data, human, mouse, RefSeq protein, analysis, mammalian mitochondra, FASEB list | NIGMS GM0077465; NIDDK DK43351; NIDDK DK57521; Australian NHMRC ; Burroughs Wellcome Fund Career Award in the Biomedical Sciences ; Howard Hughes Medical Institute ; Charles E. Culpeper Scholarship in Medical Science |
PMID:26450961 PMID:18614015 |
Free, Freely available | SCR_018165 | MitoCarta2.0 | 2026-08-05 10:47:00 | 183 | ||||||||
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VA Phenomics Library Resource Report Resource Website 1+ mentions |
VA Phenomics Library (RRID:SCR_019107) | VAPheLib | data or information resource, database | Shared knowledgebase of VA EHR-based phenotype algorithms, definitions and data curation metadata. | Phenomics library, centralized phenomics VA library, data, curation metadata, phenotype | https://www.hsrd.research.va.gov/for_researchers/cyber_seminars/archives/3814-notes.pdf | SCR_019107 | 2026-08-05 10:47:10 | 1 |
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