Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PROCHECK Resource Report Resource Website 100+ mentions |
PROCHECK (RRID:SCR_019043) | data processing software, software application, data analysis software, software resource | Software tool to check stereochemical quality of protein structures. Its outputs comprise number of plots in PostScript format and comprehensive residue by residue listing. Includes PROCHECK-NMR for checking quality of structures solved by NMR. | Stereochemical quality, protein structure, plot, residue listing, protein, assessing protein quality, | is listed by: SoftCite | DOI:10.1107/S0021889892009944 | Free, Available for download | SCR_019043 | 2026-08-15 11:26:08 | 122 | |||||||||
|
scTHI Resource Report Resource Website 1+ mentions |
scTHI (RRID:SCR_018918) | scTHI | data processing software, software application, data analysis software, software resource | Software R package to identify active pairs of ligand receptors from single cells in order to study,among others, tumor host interactions. Contains set of signatures to classify cells from tumor microenvironment. | Ligand receptor, active pair, active pair ligand receptor, single cell, tumor interaction, tumor microenvironment, cells clasification | is listed by: Bioconductor | Free, Available for download, Freely available | SCR_018918 | 2026-08-15 11:26:04 | 1 | |||||||||
|
T2DSystems Resource Report Resource Website 1+ mentions |
T2DSystems (RRID:SCR_018913) | topical portal, project portal, portal, data or information resource, consortium, disease-related portal, organization portal | Project to bridge gap between in vitro human islet studies and clinical studies in human subjects. Used to integrate cellular and medical research data, collected by partners, with computational modelling to identify pathophysiological mechanisms and markers of spectrum of biological and cellular processes involved in pancreatic beta cell failure leading to impaired glucose tolerance and T2D. | Human islet study, cellular data, medical data, diabetes, pancreatic beta cell failure, impaired glucose tolerance, type 2 diabetes, glucose tolerance | is related to: TIGER Data Portal | Type 2 Diabetes | EU Horizon 2020 | Restricted | SCR_018913 | Type 2 Diabetes Systems, T2DSystems | 2026-08-15 11:26:03 | 1 | |||||||
|
Diabetic Foot Consortium Resource Report Resource Website |
Diabetic Foot Consortium (RRID:SCR_018914) | DFC | topical portal, portal, data or information resource, consortium, disease-related portal, organization portal | Group of academic institutions committed to studying diabetic foot conditions, such as foot ulcers and wound healing, to develop predictive biomarkers which can be later used to create better treatment plans and improve health and quality of life for people living with diabetes. | Academic institution group, diabetic, diabetic foot, diabetic foot condition, foot ulcer, wound healing, biomarker |
is related to: Indiana University; Indiana; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Miami; Florida; USA is related to: University of California at San Francisco; California; USA is related to: Stanford University; Stanford; California is related to: University of Michigan; Ann Arbor; USA |
diabetic | NIDDK | SCR_018914 | 2026-08-15 11:26:03 | 0 | ||||||||
|
Leica: ASP300S Fully Enclosed Tissue Processor Resource Report Resource Website 1+ mentions |
Leica: ASP300S Fully Enclosed Tissue Processor (RRID:SCR_018916) | instrument resource | Processor that automatically washes tissue sample which needs to be usable in downstream processes. Designed for routine and research histopathology of up to 300 cassettes. | Leica ASP300S, tissue processor, tissue automatic wash, routine research histopathology, instrument, equipment | is listed by: USEDit | Restricted | https://www.leicabiosystems.com/sites/default/files/media_product-download/2021-03/95.11569_Brochure_ASP300_S_EN.pdf | SCR_018916 | 2026-08-15 11:26:00 | 2 | |||||||||
|
Mcule Resource Report Resource Website 10+ mentions |
Mcule (RRID:SCR_018921) | portal, web service, data or information resource, data access protocol, software resource | Software drug discovery platform to integrate purchasable chemical space with molecular modeling tools. Chemical marketplace for drug discovery with services based around small molecule compound sourcing. Integrated molecular modeling tools, compound database, IT infrastructure and compound procurement service with web interface. Virtual screens can be run to identify new hits and modeling applications can be used to improve their affinity and other properties. | Drug discovery platform, molecular modeling, molecular modeling tools, compound database, IT infrastructure, compound procurement service, web interface, virtual screening, modeling application | Restricted | SCR_018921 | 2026-08-15 11:26:00 | 46 | |||||||||||
|
Hetindel Resource Report Resource Website 1+ mentions |
Hetindel (RRID:SCR_018922) | data processing software, software application, data analysis software, software resource | Software package to identify genomic insertions or deletions, so called indels, in heterozygous sequencing data where both alleles carry mutations. Used to analyze heterozygous indels. | Genomic insertions identification, genomic deletions identification, indel, heterozygous sequencing data, alleles, mutation, heterozygous indel, data | has parent organization: Max Planck Institute for Developmental Biology; Tubingen; Germany | Free, Available for download, Freely available | SCR_018922 | 2026-08-15 11:26:04 | 1 | ||||||||||
|
Progenesis QI Resource Report Resource Website 1000+ mentions |
Progenesis QI (RRID:SCR_018923) | data processing software, software application, data analysis software, software resource | Software tool as next generation in LC-MS proteomics data analysis software by Nonlinear Dynamics. | Next generation, LC-MS proteomics data, data analysis, Nonlinear Dynamics | SCR_018923 | 2026-08-15 11:26:00 | 1011 | ||||||||||||
|
Urinary Stone Disease Research Network Resource Report Resource Website |
Urinary Stone Disease Research Network (RRID:SCR_019059) | USDRN | data or information resource, portal, disease-related portal, topical portal | Portal for research on urinary stones in adults and children in order to learn more about who forms kidney stones, treatments and prevention. Network comprises of experts including adult and pediatric urologists, adult and pediatric nephrologists, pediatricians, emergency department physicians, clinical trialists, nutritionists, behavioral scientists, and radiologists. Duke Clinical Research Institute is Scientific Data Research Center and with clinical sites including University of Pennsylvania Children Hospital of Philadelfia, University of Texas Southwestern Medical Center, University of Washington, Washington University in St. Louis, work together in planning, executing, and analyzing results from USDRN studies. | Urinary stone, kidney stone, kidney, treatment, prevention, urologist, nephrologist, pediatrician, clinical trial, data |
is related to: Duke University School of Medicine; North Carolina; USA is related to: University of Pennsylvania; Philadelphia; USA is related to: University of Texas System; Texas; USA is related to: Washington University in St. Louis; Missouri; USA is related to: University of Washington; Seattle; USA |
Kidney stones | NIH ; NIDDK |
Free, Freely available | SCR_019059 | 2026-08-15 11:26:01 | 0 | |||||||
|
Engauge Digitizer Resource Report Resource Website 50+ mentions |
Engauge Digitizer (RRID:SCR_019056) | data processing software, software application, image processing software, software resource | Software tool accepts image files (like PNG, JPEG and TIFF) containing graphs, and recovers the data points from those graphs. Used to convert graphs to data points. Imports image file and then digitizes it by placing points along axes and curves. | Image file acceptance, graph image, graph data recovery, graph conversion, data point, image file import, image digitization | Free, Available for download, Freely available | https://github.com/markummitchell/engauge-digitizer/tree/v12.2.1 | SCR_019056 | 2026-08-15 11:26:09 | 64 | ||||||||||
|
CueMol Resource Report Resource Website 10+ mentions |
CueMol (RRID:SCR_019052) | data processing software, data visualization software, software application, software resource | Software tool for macromolecular structure visualization. Molecular visualization framework to visualize crystallographic models of macromolecules. Used to visualize and create publication quality images of macromolecular structures with user friendly interfaces. | Macromolecular structure visualization, macromolecural crystallographic model visualization, molecular structure, molecular structure image, structure image | Free, Available for download, Freely available | https://github.com/CueMol/cuemol2, https://sourceforge.net/projects/cuemol/ | SCR_019052 | Que | 2026-08-15 11:26:01 | 23 | |||||||||
|
Differential Methylation Analysis Package Resource Report Resource Website |
Differential Methylation Analysis Package (RRID:SCR_019148) | DMAP | software toolkit, data processing software, software application, data analysis software, software resource | Software package for large scale genomic DNA methylation analysis. Filters and processes aligned bisulphite sequenced data to generate comprehensive reference methylomes in different units for any genome. Processes aligned SAM files of multiple samples to provide reliable and statistically significant differentially methylated regions, then relate them to proximal genes and CpG features with reasonable rapidity. | Genomic DNA methylation, DNA methylation analysis, bisulphite sequenced data, reference methylomes generation, genome, aligned SAM files processing, differentially methylated regions | has parent organization: University of Otago; Dunedin; New Zealand | National Centre for Growth and Development and Health Research Council ; New Zealand |
PMID:24608764 | Free, Freely available | SCR_019148 | 2026-08-15 11:26:11 | 0 | |||||||
|
FASTQuick Resource Report Resource Website 1+ mentions |
FASTQuick (RRID:SCR_019269) | data processing software, software application, data analysis software, software resource | Software tool for rapid and comprehensive quality assessment of raw sequence reads. It generates comprehensive list of QC statistics, including ancestry and contamination estimation. | Sequenced genomes quality assessment, raw sequence reads, quality assessment, NGS sequencing fastq files, quality control, | DOI:10.1101/2020.06.10.143768 | Free, Available for download, Freely available | SCR_019269 | 2026-08-15 11:26:13 | 1 | ||||||||||
|
Nurses Health Study Resource Report Resource Website 1+ mentions |
Nurses Health Study (RRID:SCR_019144) | data or information resource, portal, topical portal | Portal about prospective investigations into risk factors for major chronic diseases in women. Nurses were selected as study population because of their knowledge about health and their ability to provide complete and accurate information regarding various diseases, due to their nursing education.The largest longitudinal study of women. Started in 1976, involving 275000 participants. | Health Data and Tools | NHS | Free, Freely available | SCR_019144 | Nurses study | 2026-08-15 11:26:04 | 6 | |||||||||
|
Semi-Manual Alignment to Reference Templates Resource Report Resource Website 1000+ mentions |
Semi-Manual Alignment to Reference Templates (RRID:SCR_019265) | SMART | image analysis software, data processing software, software application, software resource, segmentation software | Software tool that extends WholeBrain framework in R for segmenting and registering experimental images to Allen Mouse Common Coordinate Framework (CCF). Streamlines processing of large volumetric LSFM datasets and solves issues with non-uniform morphing across anterior-posterior axis with interactive “choice game.” Accounts for duplicate cell counts in adjacent z images and presents new ways to easily parse apart and interactively visualize final mapped datasets. | Segmenting experimental images, registering experimental images, Allen Mouse Common Coordinate Framework, data processing, experimental images |
is used by: BICCN is related to: Allen Institute for Brain Science |
DOI:10.1101/727529 | Free, Available for download, Freely available | https://mjin1812.github.io/SMART/installation.html | SCR_019265 | 2026-08-15 11:26:13 | 2818 | |||||||
|
EBRAINS Resource Report Resource Website 50+ mentions |
EBRAINS (RRID:SCR_019260) | data repository, project portal, storage service resource, portal, data or information resource, service resource | Research infrastructure for the EU Human Brain Project. Provides digital tools and services which can be used to address challenges in brain research and brain inspired technology development. Digital research infrastructure, created by EU-funded Human Brain Project, that gathers extensive range of data and tools for brain-related research. EBRAINS will capitalize on the work performed by the Human Brain Project teams in digital neuroscience, brain medicine, and brain-inspired technology.You can share your neuroscience data, models and software. | EU Human Brain Project, European Union Human Brain Project, human brain project, human brain, OpenMINDs, FAIR |
lists: QuickNII and VisuAlign lists: QuickNII is listed by: FAIRsharing is related to: openMINDS metadata framework is related to: Julich-Brain Cytoarchitectonic Atlas is related to: BRAIN Initiative is related to: openMINDS chemicals metadata model is related to: openMINDS computation metadata model is related to: openMINDS specimenPrep metadata model is related to: openMINDS core metadata model is related to: openMINDS controlledTerms metadata model is related to: openMINDS publications metadata model is related to: openMINDS stimulation metadata model |
EU | Free, Freely available | r3d100013325 | https://doi.org/10.17616/R31NJMRX | SCR_019260 | ebrains, Ebrains | 2026-08-15 11:26:03 | 78 | ||||||
|
EIDORS:Electrical Impedance Tomography and Diffuse Optical Tomography Reconstruction Software Resource Report Resource Website 1+ mentions |
EIDORS:Electrical Impedance Tomography and Diffuse Optical Tomography Reconstruction Software (RRID:SCR_019262) | EIDORS | image analysis software, data processing software, software application, software resource, image reconstruction software | Free software algorithms for forward and inverse modelling for Electrical Impedance Tomography (EIT) and Diffusion based Optical Tomography, in medical and industrial settings, and to share data and promote collaboration between groups working these fields. | Modelling, inverse modelling, forward modelling, Electrical Impedance Tomography, Diffusion based Optical Tomography, share data | Free, Available for download, Freely available | SCR_019262 | 2026-08-15 11:26:06 | 4 | ||||||||||
|
National Collaborative on Childhood Obesity Research Resource Report Resource Website 1+ mentions |
National Collaborative on Childhood Obesity Research (RRID:SCR_019150) | NCCOR | topical portal, portal, data or information resource, disease-related portal, organization portal | Brings together Centers for Disease Control and Prevention, National Institutes of Health, Robert Wood Johnson Foundation, and U.S. Department of Agriculture to accelerate progress in reducing childhood obesity in America, to manage projects and reach common goals, to coordinate funding to make the most of available resources, to share insights and expertise to strengthen research. NCCOR focuses on efforts that have to benefit children, teens, and their families, and communities in which they live. | Childhood obesity, reducing childhood obesity, coordinate funding, coordinate projects, benefit children | Obesity | Free, Freely available | SCR_019150 | 2026-08-15 11:26:02 | 1 | |||||||||
|
CMGUI Resource Report Resource Website |
CMGUI (RRID:SCR_019271) | software toolkit, standalone software, data processing software, software application, software resource, data visualization software, 3d visualization software | Standalone application for 3D visualisation and manipulation of mathematical field models. Cmgui is part of Continuum Mechanics, Imaging, Signal processing, System identification mathematical modelling environment. Generic open source modelling and visualisation package used to enable researchers to visualise biomedical images alongside dynamic geometry fields from computer models of cells, tissues and organs. | 3D visualisation, 3D manipulation, mathematical field models, visualise biomedical images, dynamic geometry fields, cell computer models, tissue computer models, organ computer models, Continuum Mechanics, Imaging, Signal processing, System identification, OpenCMISS | Free, Available for download, Freely available | http://physiomeproject.org/software/opencmiss/cmgui/download | SCR_019271 | Cmgui, Cmgui v3.0 | 2026-08-15 11:26:06 | 0 | |||||||||
|
E-CRISP Resource Report Resource Website 100+ mentions |
E-CRISP (RRID:SCR_019088) | data access protocol, software resource, web service | Web application to design gRNA sequences. Uses algorithms to identify sgRNA target sequences in any nucleotide sequence for use in CRISPR/Cas mediated genome editing. Used for fast CRISPR target site identification. Enables designing of multiple libraries and creates genome scale libraries for several organisms in few hours. | gRNA sequence design, sgRNA target sequence identification, CRISPR, CRISPR/Cas mediated genome editing, library design, multiple libraries, genome scale libraries, bio.tools |
is listed by: Debian is listed by: bio.tools |
European Research Council Advanced Grant of the European Commission | PMID:24481216 | Free, Freely available | biotools:e-crisp | https://bio.tools/e-crisp | SCR_019088 | 2026-08-15 11:26:02 | 147 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
