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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Transcriptional Regulatory Relationships Unrevealed by Sentence based Text mining database Resource Report Resource Website 100+ mentions |
Transcriptional Regulatory Relationships Unrevealed by Sentence based Text mining database (RRID:SCR_022554) | TRRUST | data or information resource, database | TRUSST is reference database of human transcriptional regulatory interactions.TRRUST v2 is manually curated expanded reference database of human and mouse transcriptional regulatory interactions. | human and mouse transcriptional regulatory interactions, regulatory networks, transcriptional regulatory networks, human, mouse | National Research Foundation of Korea ; Brain Korea 21 PLUS program |
PMID:26066708 DOI:10.1093/nar/gkx1013 |
Restricted | https://www.grnpedia.org/trrust/v1/ | SCR_022554 | TRRUST database, TRRUSTv2 | 2026-08-15 11:29:36 | 269 | ||||||
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TTRUST Resource Report Resource Website 1+ mentions |
TTRUST (RRID:SCR_022490) | data or information resource, database | Reference database of human transcriptional regulatory interactions. Manually curated database of human and mouse transcriptional regulatory networks. | manually curated database, human transcriptional regulatory network, mouse transcriptional regulatory networks, transcriptional regulatory networks | National Research Foundation of Korea | PMID:26066708 PMID:29087512 |
Free, Freely available | https://www.grnpedia.org/trrust/v1/ | SCR_022490 | Transcriptional Regulatory Relationships Unraveled by Sentence based Text mining | 2026-08-15 11:29:34 | 7 | |||||||
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Collection of Cell Lines in Veterinary Medicine Resource Report Resource Website |
Collection of Cell Lines in Veterinary Medicine (RRID:SCR_023182) | CCLV | biomaterial supply resource, tissue bank, material resource | Generates, characterises and collects cell lines which are of interest for veterinary research and diagnostics. Collection includes cell lines of farm animals such as cattle, pig, horse, sheep, goat and poultry and other mammals, birds, reptiles, fishes and insects (70 species).Authentication and quality-control tests (tests for contamination with mycoplasms, bacteria, BVDV) of the cultures are done routinely.Cell cultures are provided to scientists of the Friedrich-Loeffler-Institute and other non-commercial institutions worldwide after consultation of a scientific staff member of the CCLV. | works with: Cellosaurus | SCR_023182 | 2026-08-15 11:29:23 | 0 | |||||||||||
|
NeuroPep Resource Report Resource Website 10+ mentions |
NeuroPep (RRID:SCR_023102) | data or information resource, database | Comprehensive resource of neuropeptides, which holds non-redundant neuropeptide entries. Data collected from resources including MEDLINE abstracts, full papers, UniProt,database at www.neuropeptides.nl and Neuropedia. Contains detailed annotations for each entry, including source organisms, tissue specificity, families, names, post-translational modifications, 3D structures and literature references. Amino acid compositions, isoelectric points, molecular weight and other physicochemical properties of peptides are also provided. Search database with keywords such as sequence, name, family, etc.,User friendly web tools like browsing, sequence alignment and mapping are also integrated.Users can submit new entries online. Each new entry is validated before incorporating it. | neuropeptide database, neuropeptide, non-redundant neuropeptide, | National Natural Science Foundation of China ; Fundamental Research Funds for the Central Universities of China |
PMID:25931458 | Free, Freely available | SCR_023102 | 2026-08-15 11:29:23 | 10 | |||||||||
|
TimeTree Resource Report Resource Website 1000+ mentions |
TimeTree (RRID:SCR_021162) | data or information resource, database | Public knowledge base for information on evolutionary timescale of life. Data from thousands of published studies are assembled into searchable tree of life scaled to time. | Evolutionary timescale of life, published studies data, , FASEB list | Free, Freely available | SCR_021162 | 2026-08-15 11:29:23 | 1496 | |||||||||||
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Structural Antibody Database Resource Report Resource Website 10+ mentions |
Structural Antibody Database (RRID:SCR_022096) | SAbDab | data or information resource, database | Database containing all antibody structures available in the PDB, annotated and presented in consistent fashion.Each structure is annotated with number of properties including experimental details, antibody nomenclature (e.g. heavy-light pairings), curated affinity data and sequence annotations. You can use the database to inspect individual structures, create and download datasets for analysis, search the database for structures with similar sequences to your query, monitor the known structural repetoire of antibodies. | antibody structure, annotated structure, Protein Data Bank |
uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: Therapeutic Structural Antibody Database is related to: Worldwide Protein Data Bank (wwPDB) |
Engineering and Physical Sciences Research Council ; UCB Pharma ; Roche GmbH |
DOI:10.1093/nar/gkt1043 | Free, Freely available | SCR_022096 | 2026-08-15 11:29:34 | 40 | |||||||
|
CMH Variant Warehouse Resource Report Resource Website |
CMH Variant Warehouse (RRID:SCR_021839) | data or information resource, database | Database of non identifiable, summary data on all variants identified in Childrens Mercy Genomic Medicine Center, including project data of Genomic Answers for Kids. Database can be searched and viewed with genomic annotations, population database cross references such as ClinVar, gnomAD and dbSNP, ACMG curations and local allele frequency. Variant data are available for bulk download as annotated VCF. | Variant data, Childrens Mercy Genomic Medicine Center Kansas City, pediatric sequencing, genome driven applications | Free, Freely available | SCR_021839 | Childrens Mercy Variant Warehouse Database | 2026-08-15 11:29:23 | 0 | ||||||||||
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T2DiACoD Resource Report Resource Website 1+ mentions |
T2DiACoD (RRID:SCR_019092) | data or information resource, database, atlas | Gene atlas of Type 2 Diabetes Mellitus associated complex disorders. Provides curated and integrated information about genes involved in development and progression of Type 2 Diabetes Mellitus, genes and pathways with evidence for role in diabetes under risk factors including obesity, diet, inflammation, stress and complex disorders that are associated with Type 2 Diabetes Mellitus including atherosclerosis, diabetic retinopathy, diabetic nephropathy, diabetic neuropathy, cardiovascular disease. | T2DM gene data, diabeties pathway, gene atlas, T2DM associated complex disorder data | Type 2 Diabetes Mellitus, T2DM | PMID:28761062 | Free, Freely available | SCR_019092 | Type 2 Diabetes Mellitus Associated Complex Disorders | 2026-08-15 11:29:23 | 4 | ||||||||
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ClinWiki Resource Report Resource Website 1+ mentions |
ClinWiki (RRID:SCR_021297) | data or information resource, database | Clinical trials database. | Clinical trials, data, Wikidata | is related to: Wikidata | William Hoos | Free, Freely available | Wikidata_Q96777166 | https://www.wikidata.org/wiki/Q96777166 | SCR_021297 | 2026-08-15 11:29:34 | 1 | |||||||
|
Seattle Alzheimer Disease Brain Cell Atlas Resource Report Resource Website 10+ mentions |
Seattle Alzheimer Disease Brain Cell Atlas (RRID:SCR_023110) | SEA-AD | data or information resource, atlas | Open atlas based on single cell profiling technologies with quantitative neuropathology and deep clinical phenotyping from middle temporal gyrus from neurotypical reference brains and brains from SEA-AD aged cohort that span spectrum of Alzheimer’s disease. Produced via collaboration between Allen Institute for Brain Science, University of Washington Alzheimer Disease Research Center and Kaiser Permanente Washington Health Research Institute. | Alzheimer’s disease, single cell profiling, quantitative neuropathology, deep clinical phenotyping, middle temporal gyrus, neurotypical reference brains, SEA-AD aged cohort brains, |
is related to: BRAIN Initiative is related to: Allen Institute for Brain Science is related to: University of Washington; Seattle; USA |
Alzheimer’s disease | NIA U19AG060909 | Free, Freely available | SCR_023110 | 2026-08-15 11:29:34 | 17 | |||||||
|
White Adipose Atlas Resource Report Resource Website 1+ mentions |
White Adipose Atlas (RRID:SCR_023625) | data or information resource, atlas | Single cell atlas of human and mouse white adipose tissue. | white adipose tissue, adipose tissue, human, mouse | NIDDK RC2 DK116691; NIDDK 5P30 DK057521; NIDDK F32 DK124914; Italian Ministry of University ; Novo Nordisk Foundation ; Lundbeck Foundation ; NIDDK UM1 DK126185; Sarnoff Cardiovascular Research Foundation Fellowship ; NHGRI 1K08 HG010155; NHGRI 1U01 HG011719; NIDDK P30 DK046200 |
PMID:35296864 | Free, Freely available | SCR_023625 | 2026-08-15 11:29:24 | 8 | |||||||||
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FASTGenomics Resource Report Resource Website 1+ mentions |
FASTGenomics (RRID:SCR_022898) | analysis service resource, service resource, data analysis service, production service resource | Open online platform for single cell RNA-seq. Provides data management and analytics. Used to analyze public and private datasets and you can choose between several best practices workflows and browse existing analyses. | single cell RNA-seq, data management, data analytics, analyze public and private datasets, best practices workflows | German Federal Ministry of Economic Affairs and Energy | Free, Freely available | https://github.com/FASTGenomics | SCR_022898 | 2026-08-15 11:29:37 | 9 | |||||||||
|
Repbase Resource Report Resource Website 500+ mentions |
Repbase (RRID:SCR_021169) | data or information resource, database | Database of repetitive DNA elements.Database of prototypic sequences representing repetitive DNA from different eukaryotic species. Used in genome sequencing projects worldwide as reference collection for masking and annotation of repetitive DNA. | repetitive DNA elements, prototypic sequences, eukaryotic species, repetitive DNA masking, repetitive DNA annotation, reference collection, FASEB list | is used by: RepeatMasker | SCR_021169 | 2026-08-15 11:29:34 | 942 | |||||||||||
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BrainRegionMarkers Resource Report Resource Website |
BrainRegionMarkers (RRID:SCR_023836) | source code, software toolkit, software resource | Software R package provides matrix of predefined set of marker genes for many regions of the human brain, using data from the Allen Human Brain Atlas. | Allen Human Brain Atlas, predefined set of marker genes matrix, human brain regions, human brain, | is related to: Allen Institute for Brain Science | Free, Freely available | SCR_023836 | 2026-08-15 11:29:35 | 0 | ||||||||||
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GCEA_FalsePositives Resource Report Resource Website |
GCEA_FalsePositives (RRID:SCR_023835) | source code, software toolkit, software resource | Software toolbox for gene category enrichment analysis false positives available. Used for analysis of statistical biases in Gene Set Enrichment Analysis applied to transcriptomic atlas data. | Allen Mouse Brain Atlas, Allen Human Brain Atlas, Gene Set Enrichment Analysis, GSEA, gene category enrichment analysis, transcriptomic atlas data, analysis false positives, statistical biases, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023835 | 2026-08-15 11:29:24 | 0 | ||||||||||
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Polygenic Score Catalog Resource Report Resource Website 100+ mentions |
Polygenic Score Catalog (RRID:SCR_023558) | data or information resource, database | Open database of polygenic scores and relevant metadata required for accurate application and evaluation. Used for reproducibility and systematic evaluation. | polygenic scores and relevant metadata, reproducibility and systematic evaluation, | UK Medical Research Council ; British Heart Foundation ; National Institute for Health Research ; Health Data Research UK ; Munz Chair of Cardiovascular Prediction and Prevention ; NHGRI U41HG007823; European Molecular Biology Laboratory ; Canadian Institutes of Health Research postdoctoral fellowship |
PMID:33692568 | Free, Freely available, | SCR_023558 | The Polygenic Score (PGS) Catalog | 2026-08-15 11:29:37 | 139 | ||||||||
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ABAnnotate Resource Report Resource Website |
ABAnnotate (RRID:SCR_023833) | source code, software toolkit, software resource | Software toolbox for ensemble-based multimodal gene-category enrichment analysis of human neuroimaging data.Performs ensemble-based gene-category enrichment analysis on volumetric human neuroimaging data via brain-wide gene expression patterns derived from Allen Human Brain Atlas. Utilizes nonparametric method using spatial autocorrelation-corrected phenotype null maps for estimation of gene-category null ensembles. | Allen Human Brain Atlas, human neuroimaging data analysis, gene expression patterns, volumetric human neuroimaging data, gene-category null ensembles estimation, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023833 | 2026-08-15 11:29:37 | 0 | ||||||||||
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Common Metabolic Disease Genome Atlas Resource Report Resource Website 1+ mentions |
Common Metabolic Disease Genome Atlas (RRID:SCR_022983) | CMDGA | data or information resource, atlas | Component of Accelerating Medicines Partnership Common Metabolic Diseases being developed at University of California San Diego as part of larger consortium of academic, industry and non-profit institutions worldwide. Resource is based on software developed by ENCODE DCC at Stanford University. Atlas provides epigenomics and other functional genomics data to promote understanding of genetic basis of common metabolic diseases. | AMP-CMD, Accelerating Medicines Partnership, Common Metabolic Diseases, epigenomics, functional genomics data, metabolic diseases |
is related to: Common Metabolic Diseases Knowledge Portal is related to: University of California at San Diego; California; USA |
metabolic diseases | Free, Freely available | SCR_022983 | 2026-08-15 11:29:34 | 9 | ||||||||
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Atlas Densities Resource Report Resource Website |
Atlas Densities (RRID:SCR_023839) | source code, software toolkit, software resource | Software tools to compute densities in context of brain atlases. Used to create BBP Cell Atlas, using Allen Mouse Brain Atlas and collected literature density values.Provides list of volumetric files that provides cell type density estimates for each voxel of mouse brain volume. | Allen Mouse Brain Atlas, compute densities in context of brain atlases, create BBP Cell Atlas, collected literature density values, list of volumetric files, mouse brain volume, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023839 | 2026-08-15 11:29:37 | 0 | ||||||||||
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AllFam Resource Report Resource Website 1+ mentions |
AllFam (RRID:SCR_021276) | data or information resource, database | Database for classifying allergenic proteins into protein families.You can browse lists of allergen families restricted by allergen source (plants, animals, fungi, bacteria) and route of exposure (inhalation, ingestion etc.) or search for specific allergens, sources or protein families. Every allergen family entry is linked to description of biochemical properties and allergological significance of family members as well as list of key references related to this family. | Allergen families, allergenic proteins, protein families, allergen source | Free, Freely available | SCR_021276 | AllFam database of allergen families | 2026-08-15 11:29:23 | 4 |
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