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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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trinetx Resource Report Resource Website 100+ mentions |
trinetx (RRID:SCR_022760) | data or information resource, database | Network of healthcare organizations, together with data partners in Brazil, South Korea, and Japan, to bring clinical facts on more than 250 million patients around the world. Federated model so users of this data are ensured new patients, observations, and results every day, all harmonized to standard terminology like ICD-10 and LOINC without any data wrangling required at the point of care. The raw data is not available to authors of papers and papers in medicine are being retracted. | Data, medical data, clinical facts, patients around the world, raw data is not available to authors, papers in medicine are being retracted | Restricted | SCR_022760 | 2026-08-15 11:29:34 | 295 | |||||||||||
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OncoboxPD Resource Report Resource Website 1+ mentions |
OncoboxPD (RRID:SCR_023723) | data or information resource, database | Structured curated collection of protein based and of metabolic human molecular pathways. Human molecular pathways database with tools for activity calculating and visualization.All pathways are functionally classified according to GO terms enrichment patterns. All pathway participants, their interactions and reactions are uniformly processed and annotated, and are ready for numeric analysis of experimental expression data.For every comparison graph is generated summarizing top up and down regulated pathways. | Gene Ontology terms enrichment patterns, human molecular pathways, curated collection, GO terms enrichment patterns, experimental expression data analysis, |
is related to: oncoboxlib is related to: Gene Ontology |
Russian Science Foundation ; National Natural Science Foundation of China ; Qingdao Key Research Project ; Qingdao Key Health Discipline Development Fund |
PMID:35615022 | Free, Freely available | SCR_023723 | Oncobox Pathway Databank | 2026-08-15 11:29:24 | 8 | |||||||
|
Atlas Alignment Meter Resource Report Resource Website |
Atlas Alignment Meter (RRID:SCR_023843) | source code, software toolkit, software resource | Software Python CLI and library to measure jaggyness of brain parcellation volume. Used to measure slice-to-slice jaggedness of volumetric dataset, only in form of NRRD file. | Allen Mouse Brain Atlas, measure jaggyness of brain parcellation volume, volumetric dataset, volumetric dataset jaggedness, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023843 | 2026-08-15 11:29:37 | 0 | ||||||||||
|
VDJbase Resource Report Resource Website 10+ mentions |
VDJbase (RRID:SCR_022599) | data or information resource, database | Open source adaptive immune receptor genotype and haplotype database. Core collection is inferred from immune receptor repertoire sequences and genomically derived material. Provides customisable reports, which allow users to study gene and allele usage in various ways. | Adaptive immune receptor genes, genotypes and haplotypes, immune receptor repertoire sequences, customisable reports, gene and allele | European Union ; NIAID R01AI127877; NIAID R01AI125567; NIAID R01AI130398 |
DOI:10.1093/nar/gkz872 | Free, Freely available | SCR_022599 | 2026-08-15 11:29:37 | 11 | |||||||||
|
IQAS Resource Report Resource Website |
IQAS (RRID:SCR_023146) | iqas, IQAS | software application, text extraction software, software resource | Modeling document labels using Latent Dirichlet Allocation is component tool under Integrated Quality Assurance System of Camarines Sur Polytechnic Colleges which categorizes text of particular document and use it for auto-tagging. | Camarines Sur Polytechnic Colleges, Modeling document labels, Latent Dirichlet Allocation, document labelling; auto-tagging; latent dirichlet allocation; | Free, Available for download, Freely available | DOI:10.5281/zenodo.7507492 | SCR_023146 | Integrated Quality Assurance System Modeling document labels using Latent Dirichlet Allocation Component Resources, Integrated Quality Assurance System MDL-LDA Component Resources, IQAS:MDL-LDA Component Resources | 2026-08-15 11:29:23 | 0 | ||||||||
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BnTIR Resource Report Resource Website 10+ mentions |
BnTIR (RRID:SCR_023021) | data or information resource, database | Searchable database of Brassiceae genomic data hosted on the website. | Brassica napus, transcriptome information, Brassiceae genomic data | National Key Research and Development Plan of China | Free, Freely available | SCR_023021 | Brassica napus Transcriptome Information Resource | 2026-08-15 11:29:37 | 23 | |||||||||
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Kinase Associated Neural Phospho Signaling Resource Report Resource Website 1+ mentions |
Kinase Associated Neural Phospho Signaling (RRID:SCR_023659) | KANPHOS | data or information resource, database | Database system that provides phosphorylated sites and information about which substrates are phosphorylated by specific kinase and which extracellular stimuli activate or inhibit protein phosphorylation via intracellular signaling cascades. | Fujita Health University, Toyoake, Japan, phosphorylated sites, substrates, phosphorylation, kinase, protein phosphorylation, intracellular signaling cascades, |
works with: Allen Brain Atlas works with: HuGE Navigator - Human Genome Epidemiology Navigator works with: UniProtKB |
Free, Freely available | SCR_023659 | 2026-08-15 11:29:24 | 1 | |||||||||
|
Brassicaceae Database Resource Report Resource Website 100+ mentions |
Brassicaceae Database (RRID:SCR_023019) | BRAD | data or information resource, database | Database includes newly released genome sequences of Brassiceae species and published genomic data of most other Brassicaceae species.Data can be browsed in JBrowse or searched in BLAST. Offers service of searching for syntenic genes, which are generated based on their syntenic relationships to genes in Arabidopsis thaliana. Regularly updated with newly released reference genomes. | genome sequences, Brassiceae species, published genomic data, syntenic genes, | National Programon Key Research Project ; National Natural Science Foundation of China |
DOI:10.1093/nar/gkab1057 | Free, Freely available | SCR_023019 | 2026-08-15 11:29:34 | 400 | ||||||||
|
ATCC STR database Resource Report Resource Website 1+ mentions |
ATCC STR database (RRID:SCR_019203) | data or information resource, database | Comprehensive database of Short Tandem Repeat DNA profiles for all of ATCC human cell lines. ATCC data collection as part of continuing efforts to characterize and authenticate cell lines in Cell Biology collection. | Short tandem repeat, DNA profile, ATCC human cell line, ATCC data collection | is related to: ATCC | Restricted | SCR_019203 | STR database, Short Tandem Repeat database | 2026-08-15 11:29:33 | 5 | |||||||||
|
Learning Locker Resource Report Resource Website |
Learning Locker (RRID:SCR_024401) | LRS | data access protocol, software resource, application programming interface | Open source software Learning Record Store implementing the xAPI (Tin Can API) e-learning standard.Type of data repository designed to store learning activity statements generated by xAPI (Tin Can) compliant learning activities. | LRS, xAPI, store learning activity statements, | Free, Available for download, Freely available | SCR_024401 | Learning Record Store | 2026-08-15 11:29:37 | 0 | |||||||||
|
PanglaoDB Resource Report Resource Website 100+ mentions |
PanglaoDB (RRID:SCR_022580) | data or information resource, database | Database for exploration of single cell RNA sequencing experiments from mouse and human. Collects and integrate data from multiple studies and present them through unified framework. | single cell RNA sequencing experiments, mouse data, human data, single cell RNA sequencing | Karolinska Institutet/AstraZeneca Integrated Cardio Metabolic Centre ; Fondation Leducq—Transantlantic PlaqOmics Network ; Hjärt-och Lungfonden ; Vetenskapsrådet |
PMID:30951143 | Free, Freely available | SCR_022580 | 2026-08-15 11:29:23 | 140 | |||||||||
|
LifeLegacy Foundation Resource Report Resource Website 1+ mentions |
LifeLegacy Foundation (RRID:SCR_000518) | biomaterial supply resource, material resource | A non-profit tissue bank that facilitates the distribution of non-transplantable tissue to the medical and research community. It provides snap frozen low post mortem interval (PMI) tissue, normal and diseased tissue, plastinated specimens, anatomical specimens, and specialty specimens. The foundation also works to increase public awareness of research tissue donation for medical research. | tissue, bank, medicine, research, body, transplant, biomaterial | is listed by: One Mind Biospecimen Bank Listing | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_37185 | SCR_000518 | LifeLegacy | 2026-08-15 11:29:25 | 1 | ||||||||
|
PCR Blog Resource Report Resource Website |
PCR Blog (RRID:SCR_000919) | data or information resource, narrative resource | A blog that contains reviews and information on PCR methods, applications and technology. Topics include tips and advice, troubleshooting, optimization and up-to-date information on the polymerase chain reaction. | pcr, method, application, technology, optimization, polymerase chain reaction, rna, dna, genetic | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_38687 | SCR_000919 | 2026-08-15 11:29:36 | 0 | ||||||||||
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Albinism database Resource Report Resource Website 1+ mentions |
Albinism database (RRID:SCR_000632) | Albinism Database | database, data or information resource | Database of mutations associated with all major known forms of oculocutaneous and ocular albinism. The Albinism Database is part of the Locus Specific Mutation Databases of the Human Genome Variation Society and accepts the submission of new mutations. A link is provided for submission of new mutations. Columns in the database include: type of albinism, human locus, omim link, link to table of mutations and polymorphisms, and map of mutation locations. | oculocutaneous albinism, deletion, mutation, polymorphism, pigment, data set |
is listed by: 3DVC has parent organization: HGVS Locus Specific Mutation Databases has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
Oculocutaneous albinism, Ocular albinism, Albinism | Written permission required, The community can contribute to this resource | nif-0000-06691 | http://albinismdb.med.umn.edu/ | SCR_000632 | 2026-08-15 11:29:38 | 6 | ||||||
|
Open Context Resource Report Resource Website |
Open Context (RRID:SCR_024604) | data or information resource, portal, organization portal | Publishes documentation and data to make them discoverable and searchable on the Web. Publishing service archives data by integrating analyses, maps, media, and journals together. Open Context editors clean data and organize content. Every item receives unique identifier that allows citation of individual items. Your data publication receives DOI. Creative Commons licenses facilitate reuse. All Open Context data publications are preserved with California Digital Library. | research data, review, edit, annotate, publish, archive, digital documentation, DOI, Creative Commons license, California Digital Library, |
is listed by: DataCite has parent organization: University of California; California; USA |
Restricted | https://api.datacite.org/dois?prefix=10.6078 | SCR_024604 | 2026-08-15 11:29:24 | 0 | |||||||||
|
FEED Resource Report Resource Website |
FEED (RRID:SCR_000637) | FEED | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Database of physiologic data and associated metadata related to feeding behavior for a number of mammalian species, including human. The data contain information on muscle activity, bone and muscle strain, jaw and oropharyngeal apparatus motion, and intra-oral pressure and were generated using several techniques (e.g., electromyography, cineradiography, sonomicrometry). The data are searchable and can be downloaded into csv format. | appetitive activity, comparative anatomy, feeding behavior, muscle, pharynx, teeth, ontology, evolution, functional morphology, physiology, development, head, behavior, mouth, oral | has parent organization: NESCent - National Evolutionary Synthesis Center | NESCent - National Evolutionary Synthesis Center | PMID:21700574 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151995 | https://github.com/NESCent/feedingdb/ | SCR_000637 | FEED: Feeding Experiments End-User Database, Feeding Experiments End-User Database | 2026-08-15 11:29:25 | 0 | ||||
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CLC Main Workbench Resource Report Resource Website 10+ mentions |
CLC Main Workbench (RRID:SCR_000354) | CLC Main Workbench | software toolkit, software resource | A suite of software for DNA, RNA and protein sequence data analysis. The software allows for the analysis and visualization of Sanger sequencing data as well as gene expression analysis, molecular cloning, primer design, phylogenetic analyses, and sequence data management. | sequencing, analysis, cloning, data, management, molecular, gene, genome, dna, rna |
is listed by: OMICtools is listed by: SoftCite |
Restricted | OMICS_01813 | SCR_000354 | 2026-08-15 11:29:25 | 31 | ||||||||
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Acquisition and Analysis for Electron Tomography Resource Report Resource Website |
Acquisition and Analysis for Electron Tomography (RRID:SCR_000192) | TOM Toolbox | software toolkit, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A software platform for low dose electron tomography (ET) for all processing steps: acquisition, alignment, reconstruction, and analysis. Requires: Matlab R2008a and Image Processing Toolbox (V6.1) | electron microscope, electron tomography, acquisition, alignment, analysis, processing, reconstruction, software, alignment, reconstruction, processing | has parent organization: Max Planck Institute of Biochemistry; Martinsried; Germany | PMID:15721576 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10145 | http://www.biochem.mpg.de/en/rd/baumeister/tom_e/ | SCR_000192 | TOM software toolbox | 2026-08-15 11:29:35 | 0 | |||||
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Kavli Institute for Theoretical Physics Online Talks Resource Report Resource Website |
Kavli Institute for Theoretical Physics Online Talks (RRID:SCR_024580) | KITP | data or information resource, portal, organization portal | Most seminars, conferences, colloquia, and lectures at KITP since late 1997 have been archived on this website, in the form of slides, audio, video, and podcasts. Portal to foster scientific communication, education, and outreach. | Kavli Institute for Theoretical Physics, seminars, conferences, colloquia, lectures, archives, |
is listed by: DataCite has parent organization: University of California; California; USA |
Free, Freely available | https://api.datacite.org/dois?prefix=10.26081 | SCR_024580 | KITP Online Talks | 2026-08-15 11:29:35 | 0 | |||||||
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Bitbucket Resource Report Resource Website 10+ mentions |
Bitbucket (RRID:SCR_000502) | Bitbucket | software repository, software resource | A hosting site for the distributed version control systems (DVCS) Git and Mercurial. The service offering includes an issue tracker and wiki, as well as integration with a number of popular services such as Basecamp, Flowdock, and Twitter. | source code |
is parent organization of: RNAmotifs is parent organization of: MetaPhlAn is parent organization of: CAFE is parent organization of: forqs is parent organization of: RCircos is parent organization of: DupRecover |
Restricted | nlx_158615 | SCR_000502 | Atlassian Bitbucket | 2026-08-15 11:29:38 | 16 |
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