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http://www.scivee.tv/

A video resource containing short, scientific videos which can be browsed or searched for. The videos are based on published papers, talks or posters. It is free to use and disseminates research findings to the world wide web. SciVee enables researchers to combine video with documentation and data in a media rich format, enhancing journal articles with pubcasts by linking and synchronizing video explanations to their published text. Similarly, video summaries can be associated and synchronized with scientific posters to create postercasts highlighting the key finding of the research.

Proper citation: SciVee (RRID:SCR_004837) Copy   

•   Source: SciCrunch Registry

http://tu-dresden.de

Public research university founded in 1828. One of the largest Universities of Technology in Germany.

Proper citation: Dresden University of Technology; Saxony; Germany (RRID:SCR_004799) Copy   

•   Source: SciCrunch Registry

http://en.wikibooks.org/wiki/Surgical_Procedures

Surgical Procedures is a wikibook on surgical procedures. It is by no means intended to be a guide to at-home surgery. Surgical illness should only be managed by a professional medical expert (e.g Surgeon). Topics include: 1. Abdominoplasty 2. Adenoidectomy 3. Amputation 4. Melanoma 5. Mandibular Fractures 6. General Surgery Guidelines 7. Abdominal Surgery A. Cholecystectomy * Open Cholecystectomy * Lap Cholecystectomy B. Cholecystitis C. Cholecystography D. Cholelithiasis E. Choledocholithiasis 8. General Surgery 9. Acid Base Disorder 10. Plastic Surgery

Proper citation: Surgical Procedures (RRID:SCR_004793) Copy   

•   Source: SciCrunch Registry

https://www.boehringer-ingelheim.com/

An Antibody supplier

Proper citation: Boehringer (RRID:SCR_004791) Copy   

•   Source: SciCrunch Registry

http://www.healthplusplus.com/wiki/Main_Page

Health++ (HealthPlusPlus) is a wiki about health, also a medical knowledge base, an online medical encyclopedia. We are making this wiki unique with adding relevant videos, links, resources and communities. Please join us in this effort to make this wiki the most useful and comprehensive medical wiki resource site. Some of the initial content on this page may be incorporated in part from copyleft sources in the public domain including wikis such as Wikipedia and AskDrWiki. Drug information for patients came from the The National Library of Medicine. Infectious disease information may have come from the Centers for Disease Control (CDC). * Health care in the United States * List of common health issues * List of RSS feeds on health * List of encyclopedias on medicine * MedlinePlus Health News * List of medical websites * List of medical wikis * List of online medical encyclopedia * List of online medical dictionaries * List of hospitals

Proper citation: Health++ (RRID:SCR_004828) Copy   

•   Source: SciCrunch Registry

http://www.autismspeaks.org/

Autism Speaks has grown into the nation''s largest autism science and advocacy organization, dedicated to funding research into the causes, prevention, treatments and a cure for autism; increasing awareness of autism spectrum disorders; and advocating for the needs of individuals with autism and their families. We are proud of what we''ve been able to accomplish and look forward to continued successes in the years ahead. In addition to putting money into new and cutting edge research, we also fund resources and programs such as the Autism Speaks Autism Treatment Network, Autism Speaks������?? Autism Genetic Resource Exchange and several other scientific and clinical programs. Autism Speaks was founded in February 2005 by Bob and Suzanne Wright, grandparents of a child with autism. Their longtime friend Bernie Marcus donated $25 million to help financially launch the organization. At Autism Speaks, our goal is to change the future for all who struggle with autism spectrum disorders. We are dedicated to funding global biomedical research into the causes, prevention, treatments, and cure for autism; to raising public awareness about autism and its effects on individuals, families, and society; and to bringing hope to all who deal with the hardships of this disorder. We are committed to raising the funds necessary to support these goals. Autism Speaks aims to bring the autism community together as one strong voice to urge the government and private sector to listen to our concerns and take action to address this urgent global health crisis. It is our firm belief that, working together, we will find the missing pieces of the puzzle.

Proper citation: Autism Speaks (RRID:SCR_004741) Copy   

•   Source: SciCrunch Registry

http://metagenomics.atc.tcs.com/binning/DiScRIBinATE/

Software for accurate taxonomic classification of metagenomic sequences using a similarity based binning method. User needs to perform a similarity search of the input metagenomic sequences (reads) against the nr protein database using BLASTx search. The generated blastx output is then taken as the input by the DiScRIBinATE program.

Proper citation: DiScRIBinATE (RRID:SCR_004862) Copy   

•   Source: SciCrunch Registry

http://www.leeds.ac.uk/

Public research university in Leeds, West Yorkshire, England. It was established in 1874 as the Yorkshire College of Science. In 1884 it merged with the Leeds School of Medicine and was renamed Yorkshire College.

Proper citation: University of Leeds; West Yorkshire; United Kingdom (RRID:SCR_004863) Copy   

•   Source: SciCrunch Registry

http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml

Cn3D is a helper application for your web browser that allows you to view 3-dimensional structures from NCBI''s Entrez retrieval service. Cn3D runs on Windows, Macintosh, and Unix. Cn3D simultaneously displays structure, sequence, and alignment, and now has powerful annotation and alignment editing features. Cn3D is a tool for visualization of three-dimensional structures with emphasis on interactive examination of sequence-structure relationships and superposition of geometrically similar structures. Can be used to display MMDB structures, superpositions of VAST related structures, and conserved core motifs identified in conserved domains.

Proper citation: NCBI Structure: Cn3D (RRID:SCR_004861) Copy   

•   Source: SciCrunch Registry

http://www.informatics.jax.org/searches/MP_form.shtml

Community ontology to provide standard terms for annotating mammalian phenotypic data. It has a hierarchical structure that permits a range of detail from high-level, broadly descriptive terms to very low-level, highly specific terms. This range is useful for annotating phenotypic data to the level of detail known and for searching for this information using either broad or specific terms as search criteria. Your input is welcome.

Proper citation: MPO (RRID:SCR_004855) Copy   

•   Source: SciCrunch Registry

https://pharmacy.mercer.edu/

One of four health sciences units within Mercer Health Sciences Center. Provides the first pharmacy program in the region to offer the Doctor of Pharmacy degree as its sole professional degree. The College offers the Doctor of Pharmacy (Pharm.D.) degree and the Doctor of Philosophy (Ph.D.) degree in pharmaceutical sciences, as well as four combined degree programs – Pharm.D./M.B.A, Pharm.D./M.P.H., Pharm.D./Ph.D. and Pharm.D./M.S. in Health Informatics.

Proper citation: Mercer University College of Pharmacy; Georgia; USA (RRID:SCR_004852) Copy   

•   Source: SciCrunch Registry

http://bergelson.uchicago.edu/software/marta

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Java-based software that blasts each sequence that you provide it, and then looks for a consensus taxon among the top-hits returned from blast. MARTA uses NCBI''s megablast program to align your sequence(s) against a local installation of blast. Then MARTA uses GenInfo Identifiers from the top-hits to retrieve taxonomic information from NCBI''s taxonomy database. Using your thresholds/cutoffs, MARTA ''votes'' to find a taxonomic assignment by consensus; MARTA might resolve some sequences to species level, and others to kingdom or to no level, depending on the taxonomic information held within your tag or sequence.

Proper citation: MARTA (RRID:SCR_004850) Copy   

•   Source: SciCrunch Registry

http://metaphyler.cbcb.umd.edu/

A taxonomic classifier for metagenomic shotgun reads, which uses phylogenetic marker genes as a taxonomic reference. The classifier, based on BLAST, uses different thresholds (automatically learned from the reference database) for each combination of taxonomic rank, reference gene, and sequence length. The reference database includes marker genes from all complete genomes, several draft genomes and the NCBI nr protein database.

Proper citation: MetaPhyler (RRID:SCR_004848) Copy   

•   Source: SciCrunch Registry

https://www.fieldtriptoolbox.org

Software toolbox for analysis of MEG, EEG, and other electrophysiological data. Used by experimental neuroscientists.

Proper citation: FieldTrip (RRID:SCR_004849) Copy   

•   Source: SciCrunch Registry

http://bioinformatics.fh-stralsund.de/nucpos/

A simulation tool to identify positions of nucleosomes from Next Generation Sequencing data.

Proper citation: NucPosSimulator (RRID:SCR_004765) Copy   

•   Source: SciCrunch Registry

http://huttenhower.sph.harvard.edu/metaphlan2

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data. It relies on unique clade-specific marker genes identified from reference genomes.

Proper citation: MetaPhlAn (RRID:SCR_004915) Copy   

•   Source: SciCrunch Registry

http://scicrunch.org

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 26, 2019.An international Non-Profit Organization that advocates Open Access for never-before-published research papers on the web and provides Self-Archiving platform to enable better knowledge sharing in a way that''s easy to publish. They collect scientific material (not only publications), e.g., Journal Articles, Theses or Dissertations, Departmental Bulletin Papers, Conference Papers, Presentations, Books, Technical Reports, Research Papers, Articles, Preprints, Learning Materials, Others. If you have such a paper and would like to add a Creative Commons license to your work, or if your working organization has no Institutional Repository (IR), Open your archives to spread them to the world. How to use: 1. Sign in with Twitter 2. Select PDF and add a Creative Commons license 3. Publish and Share on Social Media Video tutorial: http://myopenarchive.org/whatsmyoa

Proper citation: MyOpenArchive (RRID:SCR_004917) Copy   

•   Source: SciCrunch Registry

http://u-compare.org/

An integrated text mining / natural language processing system based on the Unstructured Information Management Architecture (UIMA) Framework. It allows interoperability of text mining tools and allows the creation of text mining workflows, comparison and visualization of tools. U-Compare can be launched straight from the web or downloaded. As the name implies comparison of components and workflows is a central feature of the system. U-Compare allows sets of components to be run in parallel on the same inputs and then automatically generates statistics for all possible combinations of these components. Once a workflow has been created in U-Compare it can be exported and shared with other users or used with other UIMA compatible tools and so in addition to comparison, U-Compare also functions as a general purpose workflow creation tool. It contains a repository of 50+ biomedical text mining components. These components are included in the U-Compare single-click-to-launch package, ready to use by just drag-and-drop. You can also use this repository independent from the U-Compare system. Link with Taverna It has a link with Taverna for scientific workflows, http://bioinformatics.oxfordjournals.org/content/26/19/2486.abstract, where you can use U-Compare and its workflow from within the Taverna workflow. There are two ways, the U-Compare Taverna plugin and the U-Compare command line mode as a Taverna activity. We have recently integrated it with Peter Murray-Rust''''s OSCAR for Chemistry (see http://www.nactem.ac.uk/cheta/) Web Demo: http://www.nactem.ac.uk/software/cheta/

Proper citation: U-Compare (RRID:SCR_004911) Copy   

•   Source: SciCrunch Registry

http://www.capitalbiosciences.com/

Biological products including Cell Immortalization Products, Clinically Defined Human Tissue, cDNA ORF Clones, Premade Adenoviruses, Purified Proteins, Viral Expression Systems and others as well as services like Custom Recombinant Adenovirus Production, Custom Recombinant Lentivirus Production, Protein Detection and Quantification and Stable Cell Line Production for academic and governmental research institutes, pharmaceutical and biotechnology industry. Capital Biosciences offers most types of human tissues, normal and diseased, with extensive clinical history and follow up information. Standard specimen format: Snap-frozen(flash-frozen), Formalin fixed and paraffin embedded (FFPE) tissues, Blood and blood products, Bone marrow, Total RNA, Genomic DNA, Total Proteins, Primary cell cultures, Viable frozen tissue. Tumor tissue samples include: Bladder cancer, Glioblastoma, Medulloblastoma, Breast Carcinoma, Cervical Cancer, Colorectal Cancer, Endometrial Cancer, Esophageal Cancer, Head and Neck (H&N) Carcinoma, Hepatocellular Carcinoma (HCC), Hodgkin's lymphoma, Kidney, Renal Cell Carcinoma, Lung Cancer, Non-Small Cell (NCSLC), Lung Cancer, Small Cell (SCLC), Melanoma, Mesothelioma, non-Hodgkin's Lymphoma, Ovarian Adenocarcinoma, Pancreatic Cancer, Prostate Cancer, Stomach Cancer.

Proper citation: Capital Biosciences (RRID:SCR_004879) Copy   

•   Source: SciCrunch Registry

http://useq.sourceforge.net/

A collection of software tools for for both low and high level analysis of next generation, ultra high throughput signature sequencing data from the Solexa, SOLiD, and 454 platforms.

Proper citation: USeq (RRID:SCR_004753) Copy   

•   Source: SciCrunch Registry