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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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University of Washington Genomics Core Cystic Fibrosis Research Translation Center and Research Development Program Resource Report Resource Website 1+ mentions |
University of Washington Genomics Core Cystic Fibrosis Research Translation Center and Research Development Program (RRID:SCR_015404) | CF Research Translation Center and Research Development Program, CFRTC | resource, service resource, access service resource, core facility | Core provides genomics-based tools, data management and analysis tools, and creates platforms that integrate data from the Clinical and Immunology Cores for human samples and bacterial isolates. Services include consultation and experimental design assistance for using new-generation sequencing technology, data analysis, bioinformatic support, data access and storage, high throughput and new-generation whole-genome sequencing, and RNA-seq analysis of transcriptomes. | genomics core, sequencing technology, cystic fibrosis genomics, RNA sequencing, analysis |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Washington; Seattle; USA has parent organization: Cystic Fibrosis Center - University of Washington is organization facet of: Cystic Fibrosis Center - University of Washington |
Cystic Fibrosis | NIDDK P30 DK89507 | Available to external user | SCR_015404 | Genomics Core, Cystic Fibrosis Research Translation Center, CFRTC, Research Development Program, University of Washington | 2026-08-15 11:31:17 | 1 | ||||||
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MMPC-University of Michigan Medical School Microvascular Complications Core Resource Report Resource Website |
MMPC-University of Michigan Medical School Microvascular Complications Core (RRID:SCR_015376) | resource, service resource, access service resource, core facility | Core which provides a complete range of microvascular phenotyping of murine models of diabetes, obesity and metabolic disease, including validated, reproducible and standardized phenotyping of the three major microvascular complications: diabetic polyneuropathy, nephropathy and retinopathy. | microvascular complications, dpn, dr, dn |
is listed by: NIDDK Information Network (dkNET) has parent organization: National Mouse Metabolic Phenotyping Centers has parent organization: University of Michigan; Ann Arbor; USA has parent organization: MMPC-University of Michigan Medical School is organization facet of: MMPC-University of Michigan Medical School |
NIDDK U2C-DK110768 | Available to the research community | SCR_015376 | 2026-08-15 11:31:28 | 0 | |||||||||
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MMPC-Vanderbilt University School of Medicine Metabolic Regulation Core Resource Report Resource Website |
MMPC-Vanderbilt University School of Medicine Metabolic Regulation Core (RRID:SCR_015377) | resource, service resource, access service resource, core facility | Core whose services include determining the components of energy balance with high precision and time resolution, providing robust imaging technology to monitor the dynamics of cellular process, and providing innovative mouse bariatric surgery models with application to basic and translational research. | pathophysiology, in vivo, metabolic core, metabolic imaging |
is listed by: NIDDK Information Network (dkNET) has parent organization: National Mouse Metabolic Phenotyping Centers has parent organization: MMPC-Vanderbilt University School of Medicine is organization facet of: MMPC-Vanderbilt University School of Medicine |
NIDDK U24 DK059637 | Available to the research community | SCR_015377 | 2026-08-15 11:31:30 | 0 | |||||||||
|
MMPC-University of Massachusetts Medical School Humanized Mouse Cell Transplantation and Assessment Core Resource Report Resource Website |
MMPC-University of Massachusetts Medical School Humanized Mouse Cell Transplantation and Assessment Core (RRID:SCR_015372) | resource, service resource, access service resource, core facility | Core which provides humanized mice that enable clinically relevant in vivo studies of human cells, tissues, and immune system without putting patients at risk and expert in vivo functional analysis of transplanted human islets and stem cell-derived b-cells in immunodeficient mice that are highly valuable to the mouse research community. | mouse cell transportation, humanized mouse, cell assessment |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Massachusetts Medical School; Massachusetts; USA has parent organization: National Mouse Metabolic Phenotyping Centers has parent organization: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility is organization facet of: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility |
NIDDK UC2-DK093000 | Available to the research community | SCR_015372 | 2026-08-15 11:31:30 | 0 | |||||||||
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MMPC-University of Massachusetts Medical School Islet Core Resource Report Resource Website |
MMPC-University of Massachusetts Medical School Islet Core (RRID:SCR_015370) | resource, service resource, access service resource, core facility | Core which provides comprehensive in vivo, ex vivo, and in vitro analysis of pancreatic function and islet structure. Its services include mouse pancreas preparation for histological experiments, surgical isolation of mouse islets, and islet structural analysis. | islet, insulin, pancreatic function, islet structure |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Massachusetts Medical School; Massachusetts; USA has parent organization: National Mouse Metabolic Phenotyping Centers has parent organization: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility is organization facet of: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility |
NIDDK UC2-DK093000 | Available to the research community | SCR_015370 | 2026-08-15 11:31:16 | 0 | |||||||||
|
University of North Carolina Center for Gastrointestinal Biology and Disease Biostatistics and Data Management Core Resource Report Resource Website |
University of North Carolina Center for Gastrointestinal Biology and Disease Biostatistics and Data Management Core (RRID:SCR_015616) | service resource, access service resource, core facility | Core facility that provides comprehensive statistical and data management services. Its statistical analysis services include study design, power and sample size analysis, randomization, statistical programming, consultation and the development of analysis plans, graphs, figures and reports. | statistical analysis, study design, randomization, sample size, statistical programming, statistical report |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of North Carolina Center for Gastrointestinal Biology and Disease is organization facet of: University of North Carolina Center for Gastrointestinal Biology and Disease |
digestive disease | NIDDK P30 DK034987 | Available to the research community | SCR_015616 | 2026-08-15 11:31:32 | 0 | ||||||||
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University of North Carolina Center for Gastrointestinal Biology and Disease Histology Core Resource Report Resource Website |
University of North Carolina Center for Gastrointestinal Biology and Disease Histology Core (RRID:SCR_015614) | service resource, access service resource, core facility | Core facility that provides a full range of histology services, encompassing routine and specialized grossing, tissue processing, paraffin embedding, microtomy, H&E and special staining, and immunohistochemistry. It also offers image analysis and consultations to CGIBD members and non-members. | histology, tissue processing, parrafin embedding, staining, image analysis, immunohistochemistry |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of North Carolina Center for Gastrointestinal Biology and Disease is organization facet of: University of North Carolina Center for Gastrointestinal Biology and Disease |
digestive disease | NIDDK P30 DK034987 | Available to the research community, Available to CGBID Members | SCR_015614 | 2026-08-15 11:31:30 | 0 | ||||||||
|
University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Molecular Pathology and Imaging Core Resource Report Resource Website 1+ mentions |
University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Molecular Pathology and Imaging Core (RRID:SCR_015618) | service resource, access service resource, core facility | Core facility that provides histological services, equipment usage, and technical expertise to digestive and liver research projects. | histology, equipment, digestive, liver |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases is organization facet of: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases |
digestive disease, liver disease, pancreatic disease | NIDDK P30 DK050306 | Available to the research community | SCR_015618 | 2026-08-15 11:31:32 | 2 | ||||||||
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University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Animal Metabolism Phenotyping Core Resource Report Resource Website 1+ mentions |
University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Animal Metabolism Phenotyping Core (RRID:SCR_015465) | resource, service resource, access service resource, core facility | Core that offers technical support and expertise for measuring traits related to metabolism in mouse models of obesity and nutritionally relevant disease. It provides access to methods, equipment, and populations to support high quality and high throughput phenotyping of energy balance components in mice. | animal metabolism, animal metabolism phenotyping, mri, metabolic cages, calorimetry |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA has parent organization: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center is organization facet of: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center |
Obesity | NIDDK DK056350 | Available to the research community | SCR_015465 | 2026-08-15 11:31:18 | 1 | ||||||||
|
FastTree Resource Report Resource Website 5000+ mentions |
FastTree (RRID:SCR_015501) | software resource, source code | Source code that infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT, WAG, or LG models of amino acid evolution. | phylogenetic tree, phylogenetic tree creation, bio.tools |
is listed by: Debian is listed by: bio.tools is listed by: OMICtools is related to: VeryFastTree |
PMID:19377059 DOI:10.1371/journal.pone.0009490 |
biotools:fasttree, OMICS_14703 | https://bio.tools/fasttree, https://sources.debian.org/src/fasttree/ | SCR_015501 | 2026-08-15 11:31:30 | 6279 | ||||||||
|
University of Washington Nutrition and Obesity Research Center Energy Balance Core Resource Report Resource Website |
University of Washington Nutrition and Obesity Research Center Energy Balance Core (RRID:SCR_015469) | resource, service resource, access service resource, core facility | Core that provides affiliated investigators with a resource for measuring energy balance and body composition in rodent models, and for applying neuroscience techniques to nutrition and obesity-related research. | nutrition, obesity, neuroscience, body composition, energy balance, mouse model, rodent |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Washington; Seattle; USA has parent organization: University of Washington Nutrition and Obesity Research Center is organization facet of: University of Washington Nutrition and Obesity Research Center |
Obesity | NIDDK P30DK035816 | Available to the research community | SCR_015469 | 2026-08-15 11:31:29 | 0 | ||||||||
|
phytools Resource Report Resource Website 500+ mentions |
phytools (RRID:SCR_015502) | software resource, source code | Software R package for phylogenetic comparative biology. The package contains various functions for phylogenetic analysis of comparative data from species. | r package, phylogenetic comparison, phylogenetic analysis |
is listed by: Debian is listed by: OMICtools is hosted by: GitHub |
DOI:10.1111/j.2041-210X.2011.00169.x | Available for download, Acknowledgement requested | OMICS_12499 | https://github.com/liamrevell/phytools, https://sources.debian.org/src/r-cran-phytools/ | SCR_015502 | 2026-08-15 11:31:32 | 718 | |||||||
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University of Alabama at Birmingham Nutrition and Obesity Research Center Animal Models Core Resource Report Resource Website |
University of Alabama at Birmingham Nutrition and Obesity Research Center Animal Models Core (RRID:SCR_015466) | resource, service resource, access service resource, core facility | Core that provides specialized expertise in the use of animal models and instrumentation to facilitate animal research related to nutrition and obesity. | obesity animal model, nutrition animal model, animal model service |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Alabama at Birmingham; Alabama; USA has parent organization: University of Alabama at Birmingham Nutrition and Obesity Research Center is organization facet of: University of Alabama at Birmingham Nutrition and Obesity Research Center |
Obesity | NIDDK P30DK056336 | Available to the research community, Fee for service | SCR_015466 | 2026-08-15 11:31:29 | 0 | ||||||||
|
University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Host-Microbial Analytic and Repository Core Resource Report Resource Website |
University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Host-Microbial Analytic and Repository Core (RRID:SCR_015620) | service resource, access service resource, core facility | Core facility that provides services that will enhance the analysis of both host and microbial biological processes as well as facilitate translation into the clinical arena via human subject research. | microbial biological process, host biological process, human subject research, |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases is organization facet of: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases |
digestive disease, liver disease, pancreatic disease | NIDDK P30 DK050306 | Available to the research community, Available to affiliated researchers | SCR_015620 | 2026-08-15 11:31:19 | 0 | ||||||||
|
MSM Resource Report Resource Website 1+ mentions |
MSM (RRID:SCR_015500) | software resource, source code | Source code for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal data. It was originally designed for processes observed at arbitrary times in continuous time but some other observation schemes are supported. Both Markov transition rates and the hidden Markov output process can be modelled in terms of covariates, which may be constant or piecewise-constant in time. | markov, continuous time markov, hidden markov multi state model | is hosted by: CRAN | DOI:10.18637/jss.v038.i08 | Available for download | https://www.jstatsoft.org/article/view/v038i08 | SCR_015500 | Multi-State Markov and Hidden Markov Models in Continuous Time (MSM), Multi-State Markov and Hidden Markov Models in Continuous Time | 2026-08-15 11:31:18 | 1 | |||||||
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Harvard Digestive Diseases Center Biomedical CORE C: Epithelial Cell and Mucosal Immunology Resource Report Resource Website |
Harvard Digestive Diseases Center Biomedical CORE C: Epithelial Cell and Mucosal Immunology (RRID:SCR_015588) | training resource, service resource, access service resource, core facility | Core facility that provides the infrastructure, biologic resources, expertise, and training for cross-disciplinary research on epithelial biology and immune function in mucosal surfaces and solid organs of the GI tract. | epithelial biology, biologic resource, immune funciton, mucosal surface, GI tract, gastrointestinal tract |
is listed by: NIDDK Information Network (dkNET) has parent organization: Harvard Digestive Disease Center is organization facet of: Harvard Digestive Disease Center |
digestive disease | NIDDK P30 DK034854 | Available to the research community, Account required | SCR_015588 | 2026-08-15 11:31:30 | 0 | ||||||||
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University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Communication for Health Applications and Interventions Core Resource Report Resource Website |
University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Communication for Health Applications and Interventions Core (RRID:SCR_015461) | resource, service resource, access service resource, core facility | Core that uses technologies to facilitate the translation of traditional evidence-based behavioral interventions into effective web- and mobile-based interventions in fields such as obesity and cancer prevention. | obesity prevention, translational cresearch core, communcations core |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA has parent organization: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center is organization facet of: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center |
Obesity | NIDDK DK056350 | Available to the research community | SCR_015461 | 2026-08-15 11:31:18 | 0 | ||||||||
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Vanderbilt Digestive Disease Research Center Biostatistics Administrative Core Resource Report Resource Website |
Vanderbilt Digestive Disease Research Center Biostatistics Administrative Core (RRID:SCR_015901) | service resource, access service resource, core facility | Core facility for the Vanderbilt Digestive Disease Research Center. | digestive, disease, research, core facility, administrative | is organization facet of: Vanderbilt Digestive Disease Research Center | SCR_015901 | 2026-08-15 11:31:19 | 0 | |||||||||||
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Emory Epithelial Pathobiology Research Development Center Cell Culture Core Resource Report Resource Website |
Emory Epithelial Pathobiology Research Development Center Cell Culture Core (RRID:SCR_015904) | service resource, access service resource, core facility | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 5th, 2023. Core facility for the Emory Epithelial Pathobiology Research Development Center. | epithelial, pathobiology, research, development, cell, culture | is organization facet of: Emory Epithelial Pathobiology Research Development Center | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015904 | 2026-08-15 11:31:32 | 0 | ||||||||||
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UCSF Liver Center Immunology Core Resource Report Resource Website |
UCSF Liver Center Immunology Core (RRID:SCR_015596) | service resource, access service resource, core facility | Core that takes advantage of local expertise and resources to enable Center members to analyze cell populations in mouse or human livers. It performs complex analyses on small numbers of human cells, such as those obtained from liver biopsies. | immunology, single cell analysis, flow cytometry, QPCR |
is listed by: NIDDK Information Network (dkNET) has parent organization: UCSF Liver Center is organization facet of: UCSF Liver Center |
liver disease | NIDDK P30 DK026743 | Available to the research community | SCR_015596 | 2026-08-15 11:31:19 | 0 |
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