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http://www.marine-geo.org/inc/swagger/listings/imageserverinfo.json
API for requesting images from Global-Multi Resolution Topography (GRMT).
Proper citation: Global-Multi Resolution Topography Image Service (RRID:SCR_006347) Copy
http://ebiz.sfn.org/PersonifyEbusiness/MemberDirectory/tabid/143/Default.aspx
This directory contains proprietary and confidential information belonging to the Society for Neuroscience. It is designated a service to and for personal, noncommercial and information use only of its members and granting agencies. Note that links to individual websites are provided by SfN members and are in no way endorsed by the Society for Neuroscience. SfN reserves the right to remove any member information or web links which are contrary in nature to professional, scientific content. The Society for Neuroscience retains all ownership and proprietary rights in the directory and the information contained in the directory. Any commercial use or other solicitation is strictly prohibited. By continuing with your search inquiry, you are hereby agreeing to these provisions. This system is not intended for wholesale searches of large institutions, or of cities, states or countries. To prevent abuse, the system is set to return results only when the number of matching members is 200 or less. Searches returning a large number of matching members will have to be refined so that they return 200 or less.
Proper citation: Society for Neuroscience Membership Directory Search (RRID:SCR_006348) Copy
Supports research and scholarship to improve the quality of life by providing funding for grants in three program areas: studying complex systems, understanding human cognition, and mathematical and complex systems approaches for brain cancer. Types of awards include Fellowship Awards, Scholar Awards, and Collaborative Awards. * Studying Complex Systems: This program supports scholarship and research directed toward the development of theoretical and mathematical tools that can be applied to the study of complex, adaptive, nonlinear systems. It is anticipated that research funded in this program will address issues in fields such as biology, biodiversity, climate, demography, epidemiology, technological change, economic development, governance, or computation. * Understanding Human Cognition: This program supports research studying how neural systems are linked to and support cognitive functions and how cognitive systems are related to an organism's (preferably human) observable behavior. Studies with model organisms should justify why such models were selected and how data obtained from models advances our understanding of human cognition. * Mathematical & Complex Systems Approaches for Brain Cancer: (Collaborative Activity Awards grant type only.) Despite some recent cause for optimism for advancing the clinical treatment of brain cancers, for many patients brain tumor remains a devastating diagnosis. Progress against this disease has been stymied by limited understandings of the molecular, metabolic, and physiological characteristics of human brain cancers across multiple temporal and spatial scales and by the failure of many preclinical models to predict patient responses.
Proper citation: James S. McDonnell Foundation (RRID:SCR_006341) Copy
Software application for performing unsupervised machine learning and visualization with a focus on the clustering (separating data into groups) and dimensionality reduction (finding low dimensional structure in high dimensional data) subfields of machine learning. For visualization we provide support for both the whole dataset (e.g. a scatter plot) and points (e.g. transforming a particular point into an image). * Endlessly extensible. Every clusterer, reducer, point visualizer and dataset visualizer in Divvy is a plugin. We''ve provided a few big ones (K-means, PCA, scatter plot, &c.) and we''re hoping the community will use our plugin protocol to build many more. Each plugin defines its own UI, so your algorithm can look and behave the way that you want it to without top-down constraints. * Have lots of cores? Divvy is both task and data parallel. No longer will you be waiting for one algorithm to complete before you start another. Start as many as you want and keep using the UI. Only started one? With data parallelism we''ll still push your new MacBook Pro to 800% CPU utilization. * Part of your workflow: Export your clusterings and reductions to .csv and your visualizations to .png. Use your Matlab or R data with our Matlab/R to Divvy export tools available at http://github.com/jmlewis/divvy.
Proper citation: Divvy (RRID:SCR_006336) Copy
Nature Network is the professional networking website for scientists around the world. It''s an online meeting place where you and your colleagues can gather, share and discuss ideas, and keep in touch. It''s also where you can consult the community for answers to scientific questions or offer your expertise to help others. Additionally, using the Workbench, you can collate your online scientific tools or widgets together in a customizable workspace, allowing you to group your most important tools and information in the way that works best for you. Scientists can also benefit from interactions at the local level whether discussing local news, looking for jobs or finding out about events nearby. All features on Nature Network are completely free. To get the most out of the site, all you need to do is create a profile. You can also use your nature.com account details if you have one. Once you''re set up, here''s a selection of what you can do: *Manage My Profile *Manage My Contacts *Join or Start Groups *Join or Start Forums *Blog *Join a Hub *Customize Your Workbench *Ask a Question or Submit an Answer to Q&A
Proper citation: Nature Network (RRID:SCR_006337) Copy
http://researchdata.4tu.nl/en/home/
Multidisciplinary data repository for a consortium of universities in the Netherlands housing over datasets with a focus on scientific and technical data. Most data were produced by Dutch researchers including datasets from doctoral research. Users can deposit up to 1G by completing an upload form. Collection development foci include applied sciences, biomedical technology, earth sciences, and technology and construction. 4TU.Datacentrum is a collaboration of the libraries of the three leading technical universities - Delft University of Technology, Eindhoven University of Technology and the University of Twente.
Proper citation: 4TU.Datacentrum (RRID:SCR_006295) Copy
http://intramural.nimh.nih.gov/gcap/index.htm
Schizophrenia related portal that aims to solve the mystery of genetic predisposition to psychosis, develop new methods for early diagnosis and prevention, and discover new treatments that will cure people suffering from it. Our objectives are to fully characterize: # neurobiological mechanisms related to susceptibility genes for schizophrenia and related clinical disorders; # genetic variation in aspects of cognition and emotionality associated with schizophrenia; and # small molecular targets for novel therapies. A unique feature of this Program is that its diverse scientific resources will be focused on a highly specific scientific agenda, that is to acquire the critical biological information about the susceptibility genes associated with schizophrenia and related illnesses. Our mission and goal, to understand the basic mechanisms of serious mental illness, has again guided us into new areas of research and to new insights. We have found evidence of new genes implicated in the cause of schizophrenia and involved in brain functions related to cognition and emotion and we have begun to explore how genes interact with each other and with the environment to individualize risk for these conditions. We are working now with over 20 genes related to schizophrenia. One of the key developments in our research over the past year has been the emergence of some targets for the development of novel therapeutics. We have discovered a new schizophrenia susceptibility gene, KCNH2, which represents the first clear target for the development of novel treatments. Just in this past year, for example, we published the first extensive statistical analysis of how schizophrenia genes may vary in their risk effects based on different genetic background (Nicodemus et al Hum Gen 2006), the first studies of schizophrenia genes interacting in effecting gene expression in brain (Lipska et al Hum Mol Genetics 2006a, Lipska et al Hum Mol Gen 2006 b); the first evidence that the mechanism of genetic association of NRG1 with schizophrenia involves a novel isoform of the gene in human brain (Law et al PNAS 2006), and the first evidence that MAOA may be linked to mood and impulse control because it effects critical mood regulatory neural networks (Meyer-Lindenberg et al PNAS 2006).
Proper citation: Genes Cognition and Psychosis Program (RRID:SCR_006292) Copy
Collection of high resolution images and movies of mouse and human embryos produced using high resolution episcopic microscopy (HREM). Each data set is a series of block-face images generated during sectioning through an entire embryo, typically cut at 2-3 micrometers. Datasets are organized by approximate developmental stage and each embryo has been assigned a specimen ID (SID) for identification. This is an ongoing project funded by the Wellcome Trust to provide comprehensive imaging of normal and mutant mouse embryos that will complement the standard anatomical texts and form the basis for systematic phenotyping. * Movies: A 3D reconstruction shows each embryo, and lower resolution movies created through each orthogonal plane enable you to quickly review the data set. * Image Stacks: In the stack viewer, you can step through the images in sequence, zoom in to see fine details and adjust the image contrast. * NEW: Embryo Comparison: Two image stacks can now be compared in the stack viewer.
Proper citation: Embryo Imaging (RRID:SCR_006329) Copy
An Antibody supplier
Proper citation: QED Bioscience (RRID:SCR_006405) Copy
Neuroscience-related portal that has launched a free textbook project on a wiki that will provide a free, accurate and comprehensive introduction to neuroscience for both educators and students. This is being accomplished through an online collaborative environment where the next generation of neuroscientists - and anyone who would like to help - will have the opportunity to work with colleagues from all over the world. The textbook is provided in three different formats: A downloadable app from the IOS and android market, a downloadable .pdf, and a physical copy that can be ordered at cost. Articles and a blog are also available from the portal.
Proper citation: Neuro-Cloud (RRID:SCR_006365) Copy
http://repositories.cdlib.org/mrrc/1
This is a data resource of recordings of spike activity from about 5000 neurons along the auditory pathway from the cochlear nuclei to the neocortex, cerebellum, and elsewhere. There is also an analysis program that averages histograms of spike activity and concurrent electromyographic (EMG) activity obtained from the orbicularis oculi (eyeblink) and levator oris (nose twitch) muscles. No search interface; distribution consists of a collection of Microsoft Office and Windows executable files. Each recording contains the response to a 70 dB click* (produced by applying a 1 ms rectangular pulse to a loudspeaker) before or after conditioning blink responses to the click as a CS. A discriminative acoustic stimulus, a 70 dB hiss DS, was also presented at a time apart from the click. There are guides to the regions from which each recording was made and to the associated behavioral states as well as a tutorial on how to use the analysis program. There is an appendix listing the data format. Sufficient indexes and examples are available here to understand the data. The data can be downloaded (voluminous) or borrowed on CD (5) from the UCLA Biomedical Library and copied. There is also an analysis program that averages histograms of spike activity and concurrent electromyographic (EMG) activity obtained from the orbicularis oculi (eyeblink) and levator oris (nose twitch) muscles. Each recording contains the response to a 70 dB click (produced by applying a 1 ms rectangular pulse to a loudspeaker) before or after conditioning blink responses to the click as a CS. A discriminative acoustic stimulus, a 70 dB hiss DS, was also presented at a time apart from the click. There are guides to the regions from which each recording was made and to the associated behavioral states as well as a tutorial on how to use the analysis program. There is an appendix listing the data format. There is a second appendix (12. Appendix 2) with downloadable, self-executable data files of the complete database. Also available are copies of the original lab notebooks with depths of the recordings. WHAT THE ANALYSIS PROGRAM DOES 1. Averages four groups of specified spike or EMG files. 2. Graphs the current averages as peri-stimulus time histograms (PSTHs). (Check the ppt files.) 3. Adjusts scaling to specification. 4. Prints or copies the graphs to slides. 5. Creates super averages from specified averages or data from many units 6. Graphs, scales, prints and copies super averages 7. Batch processing as yet not ready for use 8. Provides detailed reports of all useful information contained within the current averages raw data files or general information about the super averages 9. Provides error messages concerning the analyses.
Proper citation: Summary of recordings of spike trains available for analysis and guide to their context and means for their analysis (RRID:SCR_006366) Copy
http://www2.warwick.ac.uk/fac/sci/systemsbiology/staff/ott/tools_and_software/wigwams
A computational tool for analyzing multiple gene expression time series data sets for the same organism. The goal is to determine if there is evidence for gene regulatory mechanisms that are shared by multiple different expression responses.
Proper citation: Wigwams (RRID:SCR_006400) Copy
A community owned repository of concepts used to define all concepts unambiguously. Users can edit and add their own concepts to the wiki.
Proper citation: ConceptWiki (RRID:SCR_006362) Copy
Databases and portal to data and ordering mouse strains from MRC Harwell including mouse stocks in FESA (Frozen Embryo and Sperm Archive), mutants from the mutagenesis screen, the ENU DNA archive, standardized phenotyping procedures, imprinting genes and chromosome anomalies. The portal integrates curated information from the MRC Harwell stock resource, and other Harwell databases, with information from external data resources to provide added value information above and beyond what is available through other routes such as IMSR (International Mouse Stain Resource). MouseBook can be searched either using an intuitive Google-style free text search or using the Mammalian Phenotype Ontology (MP) tree structure. Text searches can be on gene, allele, strain identifier (e.g. MGI ID) or phenotype term and are assisted by automatic recognition of term types and autocompletion of gene and allele names covered by the database. Results are returned in a tabbed format providing categorized results identified from each of the catalogs in MouseBook. Individual results lines from each catalog include information on gene, allele, chromosomal location and phenotype and provide a simple click-through link to further information as well as ordering the strain. The infrastructure underlying MouseBook has been designed to be extensible, allowing additional data sources to be added enabling other sites to make their data directly available through MouseBook.
Proper citation: MouseBook (RRID:SCR_006358) Copy
Web based Java implementation of biological neuron model networks.
Proper citation: Neurodraw (RRID:SCR_006351) Copy
Private Ivy League research university in New Haven, Connecticut. Founded in 1701 as the Collegiate School, it is the third-oldest institution of higher education in the United States and one of the nine Colonial Colleges chartered before the American Revolution.
Proper citation: Yale University; Connecticut; USA (RRID:SCR_006352) Copy
https://www.researchmatch.org/
Free and secure registry to bring together two groups of people who are looking for one another: (1) people who are trying to find research studies, and (2) researchers who are looking for people to participate in their studies. It has been developed by major academic institutions across the country who want to involve you in the mission of helping today''''s studies make a real difference for everyone''''s health in the future. Anyone can join ResearchMatch. Many studies are looking for healthy people of all ages, while some are looking for people with specific health conditions. ResearchMatch can help ''''match'''' you with any type of research study, ranging from surveys to clinical trials, always giving you the choice to decide what studies may interest you.
Proper citation: ResearchMatch (RRID:SCR_006387) Copy
https://bioconductor.org/packages/IRanges/
Software tool for computing and annotating genomic ranges.Provides efficient low-level and highly reusable S4 classes for storing ranges of integers, RLE vectors (Run-Length Encoding), and, more generally, data that can be organized sequentially (formally defined as Vector objects), as well as views on these Vector objects. Efficient list-like classes are also provided for storing big collections of instances of the basic classes. All classes in the package use consistent naming and share the same rich and consistent Vector API as much as possible.
Proper citation: IRanges (RRID:SCR_006420) Copy
Web-based research management system that provides a one-stop-shop to researchers and their study teams to browse services and submit service and pricing requests to research service providers with a focus on billing compliance and proposal and budget development. Upgrades in process include work fulfillment data collection, invoicing and billing features, and outcome metrics using grant and publication data.
Proper citation: SPARC Request (RRID:SCR_006388) Copy
http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS
Web service with well defined methods to enable programmatic access to molecular interactions. Standard for computational access to molecular interaction data resources.
Proper citation: PSICQUIC Registry (RRID:SCR_006389) Copy
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