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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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World Health Organization: The Global Health Library Resource Report Resource Website 1+ mentions |
World Health Organization: The Global Health Library (RRID:SCR_000391) | data or information resource, portal, bibliography, topical portal | The Global Health Library assembles health data, readable in many languages. The GHL aims to: * point to reliable information collections and systems, in which different users and user groups (ministries of health, policy makers, health workers, information providers, patients and their families, general public) can focus on the knowledge that best meets their health information needs; * act as a facilitator enabling access to information contents produced by numerous key providers - be they commercial companies, government institutions, civil society, not-for-profit organizations, and regional or international bodies; and * strive for universality, with focus on developing countries, and will act as a resource locator for print materials essential to areas that do not have access to electronic content. | clinical, health, human, people | has parent organization: World Health Organization | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10556 | http://www.who.int/ghl/en/ | SCR_000391 | GHL | 2026-08-15 11:21:49 | 2 | |||||||
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MatrixScience Resource Report Resource Website 1000+ mentions |
MatrixScience (RRID:SCR_000307) | Matrix Science | software resource | A collection of both commercial and noncommercial software products which includes: Mascot Distiller, Mascot Parser, and Mascot Server. Mascot Distiller is commercial and provides a single interface to process raw data into de-isotoped peak lists. This tool can also be used for the easy distribution of search and quantitative results to colleagues. The non-commercial Mascot Parser software provides an API (Application Programmer Interface) that makes it easier to access search results written in C++, Java, Python and Perl. Mascot Server is non-commercial, and is a collection of peptide mass fingerprints as well as a MS/MS database. A selection of popular sequence databases are available online and include SwissProt, NCBInr, and the EST divisions of EMBL. This server is best used for evaluating and searching for smaller data sets. | c++, python, perl, mascot, peptide mass fingerprints, ms/ms, swissprot, ncbinr, embl, | Restricted | nlx_156837 | SCR_000307 | 2026-08-15 11:21:47 | 1683 | |||||||||
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Epistemio Resource Report Resource Website 1+ mentions |
Epistemio (RRID:SCR_000429) | Epistemio | database, bibliography, web service, data access protocol, data or information resource, software resource | Database platform that aggregates post-publication peer reviews and ratings. It also includes a large-scale bibliographic database and features free reference management tools. | peer review, rating, aggregator, post-publication, publication | is listed by: FORCE11 | Restricted | nlx_156040 | SCR_000429 | 2026-08-15 11:21:44 | 1 | ||||||||
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PyMOL Resource Report Resource Website 1000+ mentions |
PyMOL (RRID:SCR_000305) | data processing software, software application, software resource, data visualization software, 3d visualization software | A user-sponsored molecular visualization software system on an open-source foundation. The software has the capabilities to view, render, animate, export, present and develop three dimensional molecular structures. | visualization, molecule, 3d, molecular structure visualization, molecular visualization system, |
is listed by: Debian is listed by: OMICtools is listed by: SoftCite |
Restricted | nlx_156834, OMICS_03802 | https://sources.debian.org/src/pymol/ | SCR_000305 | 2026-08-15 11:21:43 | 3493 | ||||||||
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LIPAGE Resource Report Resource Website 1+ mentions |
LIPAGE (RRID:SCR_000290) | software application, software resource, data management software | Laboratory information management system for proteomics. The software works with 2DPAGE-based proteomics workflow. | proteomics, laboratory, open source, 2dpage, management system |
is listed by: OMICtools has parent organization: SourceForge |
PMID:17018156 | Free, Available for download, Freely available | OMICS_02553 | SCR_000290 | LIMS for proteomics | 2026-08-15 11:21:42 | 1 | |||||||
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RADtools Resource Report Resource Website 1+ mentions |
RADtools (RRID:SCR_000324) | software resource | Software tools for processing RAD Sequencing Illumina reads. Version 1.0 is a pipeline for transforming Illumina reads into candidate genetic markers. | standalone software, illumina | is listed by: OMICtools | PMID:21541297 | Free, Available for download, Freely available | OMICS_03727 | https://www.wiki.ed.ac.uk/display/RADSequencing/ | SCR_000324 | 2026-08-15 11:21:47 | 1 | |||||||
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NIMBL Resource Report Resource Website 1+ mentions |
NIMBL (RRID:SCR_000482) | NIMBL | software resource | MATLAB code to quality control and prioritize differentially methylated markers from illumina infinium arrays. | quality control, illumina, infinium array, dna methylation, biomarker, dna methylation array, dna methylome, infinium 450k, biomarker discovery, differential methylation, epigenetics, epigenomics |
is listed by: OMICtools has parent organization: University of Nottingham; Nottingham; United Kingdom |
PMID:22936948 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_02305 | SCR_000482 | NIMBL: Numerical Identification of Methylation Biomarker Lists, Numerical Identification of Methylation Biomarker Lists | 2026-08-15 11:21:45 | 1 | ||||||
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Simulx Resource Report Resource Website 1+ mentions |
Simulx (RRID:SCR_000486) | Simulx | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 8, 2025. R function for computing predictions and simulating data from both Mlxtran and PharmML models that is based on MlxCompute, the model simulation engine developed by Lixoft. MlxCompute combines the Mlxtran language interpreter with the equation solvers to compute efficiently complex systems of ordinary differential equations (ODEs) and delayed differential equations (DDEs). Simulx takes advantage of the modularity of hierarchical models for simulating different components of a model: models for population parameters, individual covariates, individual parameters and longitudinal data, including continuous, count, categorical, and time-to-event data. It is also extremely flexible for defining complex dose regimens. Simulx will be the core of the next version of the DDMoRe Clinical Trial Simulator. | windows, linux, macos, model, r, simulation, population, covariate, dose regimen |
is related to: PharmML has parent organization: DDMoRe has parent organization: National Institute for Research in Computer Science and Control; Brittany; France |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_158166 | SCR_000486 | 2026-08-15 11:21:45 | 2 | ||||||||
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PharmML Resource Report Resource Website 1+ mentions |
PharmML (RRID:SCR_000487) | pharmML | markup language, standard specification, interchange format, data or information resource, narrative resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 1, 2023. Standard for encoding of models, associated tasks and their annotation as used in pharmacometrics. | model, pharmacometrics, pharmacokinetics, pharmacodynamics |
is related to: Simulx has parent organization: DDMoRe |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_158169 | http://www.ddmore.eu/pharmml, https://sites.google.com/site/pharmmltemp/ | SCR_000487 | Pharmacometrics Markup Language | 2026-08-15 11:21:52 | 2 | ||||||
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Alzheimer Society of Canada Resource Report Resource Website 1+ mentions |
Alzheimer Society of Canada (RRID:SCR_000485) | institution | A nonprofit health organization that works to improve the quality of life of Canadians affected by Alzheimer's disease and other dementias. This organization also supports research on the cause and potential cures for the disease through education and funding. | dementia, alzheimer's, disease, research, funding, nonprofit, canada | Alzheimer's disease, Dementia | ISNI: 0000 0001 0702 2390, Crossref funder ID: 501100000143, nlx_158162, Wikidata: Q4738828, grid.453286.e | https://ror.org/03benss35 | SCR_000485 | 2026-08-15 11:21:45 | 2 | |||||||||
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Information Artifact Ontology Resource Report Resource Website 1+ mentions |
Information Artifact Ontology (RRID:SCR_000477) | IAO | ontology, data or information resource, controlled vocabulary | An ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch. Please note: The ontology metrics displayed by BioPortal do not distinguish IAO-developed terms from terms imported from other ontologies. | owl, information, ontology |
uses: Ontology for Biomedical Investigations is used by: TRANSFoRm Clinical Data Integration Model is listed by: BioPortal is listed by: OBO is listed by: Google Code is related to: Porifera Ontology is related to: Mental Functioning Ontology is related to: Beta Cell Genomics Ontology is related to: Biological Collections Ontology is related to: Chemical Methods Ontology is related to: Influenza Ontology is related to: Ontology for Genetic Interval is related to: Ontology for Parasite LifeCycle is related to: Ontology of Adverse Events is related to: Ontology of Medically Related Social Entities is related to: Population and Community Ontology is related to: Software Ontology is related to: Adverse Event Reporting Ontology is related to: Ontology for Biomedical Investigations |
Free, Available for download, Freely available | nlx_157441 | https://code.google.com/p/information-artifact-ontology/, http://purl.bioontology.org/ontology/IAO, http://purl.obolibrary.org/obo/iao.owl | http://purl.obolibrary.org/obo/iao | SCR_000477 | 2026-08-15 11:21:52 | 2 | ||||||
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Neurosciences on the Internet Resource Report Resource Website 1+ mentions |
Neurosciences on the Internet (RRID:SCR_000478) | Neuroguide.com, | data or information resource, portal, topical portal | A searchable and browsable index of neuroscience resources available on the internet including neurobiology, neurology, neurosurgery, psychiatry, psychology, cognitive science sites and information on human neurological diseases. Two categories exist: Best Bets and Cutaneous Fields of Peripheral Nerves. | neuroscience, neurobiology, neurology, neurosurgery, psychiatry, psychology, cognitive science, human, neurological disease, peripheral nerve | nif-0000-00024 | SCR_000478 | Neurosciences on the Internet http://www.neuroguide.com/, Neurosciences on the Internet Neuroguide.com | 2026-08-15 11:21:45 | 2 | |||||||||
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SAMBLASTER Resource Report Resource Website 10+ mentions |
SAMBLASTER (RRID:SCR_000468) | software resource | Software tool to mark duplicates and extract discordant and split reads from SAM files. This fast and flexible program for marking duplicates in read-id grouped paired-end SAM files can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs. | standalone software, c++, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: University of Virginia; Virginia; USA |
PMID:24812344 DOI:10.1093/bioinformatics/btu314 |
Free, Available for download, Freely available | biotools:samblaster, OMICS_04682 | https://bio.tools/samblaster, https://sources.debian.org/src/samblaster/ | SCR_000468 | 2026-08-15 11:21:45 | 19 | |||||||
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nmrML Resource Report Resource Website 1+ mentions |
nmrML (RRID:SCR_000467) | nmrML | markup language, standard specification, interchange format, data or information resource, narrative resource | An open mark-up language for NMR data. | nuclear magnetic resonance, bio.tools |
is listed by: bio.tools is listed by: Debian is parent organization of: nmrCV |
nlx_157309, biotools:nmrml_converter | https://bio.tools/nmrml_converter | SCR_000467 | 2026-08-15 11:21:51 | 9 | ||||||||
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TAPyR Resource Report Resource Website 1+ mentions |
TAPyR (RRID:SCR_000588) | software resource | An efficient software tool for the local alignment of pyrosequencing reads produced by the GS FLX (454) Genome Analyzer technology against a reference genome sequence. The approach explores the characteristics of the data in re-sequencing applications and uses state of the art BWT-based indexing techniques combined with a flexible seed-based approach, leading to a fast and accurate algorithm which needs very little user parameterization. Although initially developed having this specific technology in mind, this software performs equally well on any other platform that can return its sequencing reads in the FASTA, FASTQ or SFF formats, including Illumina, Ion Torrent and Pacific Biosciences technologies. | gs flx, genome analyzer, bwt, fasta, fastq, sff formats, pyrosequencing reads, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
PMID:21672185 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:tapyr, OMICS_00693 | https://bio.tools/tapyr | SCR_000588 | Tool for Alignment of Pyrosequencing Reads | 2026-08-15 11:21:46 | 1 | ||||||
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TOPPAS Resource Report Resource Website 1+ mentions |
TOPPAS (RRID:SCR_000533) | software resource | A graphical user interface (GUI) for rapid composition of HPLC-MS analysis workflows. Workflow construction is reduced to drag-and-drop of analysis tools and adding connections in between. | gui, graphical user interface, analysis, hplc-ms, workflow |
is listed by: OMICtools has parent organization: SourceForge |
PMID:22583024 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_02640 | http://open-ms.sourceforge.net/workflow-integration/toppasworkflows/ | SCR_000533 | The OpenMS Proteomics Pipeline Assistant, TOPP Pipeline Assistant | 2026-08-15 11:21:45 | 1 | ||||||
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Royal Society of Chemistry Resource Report Resource Website 1+ mentions |
Royal Society of Chemistry (RRID:SCR_000494) | RSC | institution | The UK's professional body for chemical scientists, supporting and representing members and bringing together chemical scientists from all over the world. This not-for-profit organisation has an international publishing business and their activities span education, conferences, science policy and the promotion of chemistry to the public. They have offices in Europe, Asia, North America and South America. | chemical sciences, chemistry |
is related to: Open PHACTS is parent organization of: Chemical Methods Ontology is parent organization of: RSC Prospect is parent organization of: ChemSpider |
Wikidata: Q905549, grid.431456.1, nlx_158344, ISNI: 0000 0001 0668 7091, Crossref funder ID: 501100000704 | https://ror.org/025sbr097 | SCR_000494 | 2026-08-15 11:21:52 | 2 | ||||||||
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Oncotest Resource Report Resource Website 1+ mentions |
Oncotest (RRID:SCR_000489) | Oncotest | commercial organization | A contract research organization (CRO) specializing in preclinical oncology services. As a pioneer in the field of patient derived tumor xenografts (PDX), they provide tailored solutions to the problems faced by preclinical oncology researchers. They assist with the identification of the best drug candidates and the validation of their targets and deliver in-depth bioinformatics analyses, laying the groundwork for the successful planning of clinical trials. Their diverse tumor model collection enables them to recommend the right assays and models to answer their customers' questions. Their AAALAC accredited facilities with IVC system, separate model development unit, large cage capacity of over 14,500 mice and proprietary electronic measurement system with an integrated database and by continuously maintaining important PDX models in mice, they are able to provide the highest standard of testing within a reasonable timeframe. | preclinical, oncology, xenograft |
is related to: PREDECT is related to: Charles River Laboratories |
Cancer, Tumor | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_158264 | SCR_000489 | Oncotest GmbH | 2026-08-15 11:21:45 | 2 | ||||||
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CARTA Resource Report Resource Website 1+ mentions |
CARTA (RRID:SCR_000525) | CARTA | nonprofit organization | A virtual organization that promotes transdisciplinary research into anthropogeny, or the study of human origins. The research interests are broad and include finding the structural and molecular differences between humans and apes, identifying and explaining external mechanisms, and defining the evolutionary origins of humans. The center hosts symposia as well as visiting professors for the anthropogeny graduate program. | anthropogeny, anthropology, human, origin, graduate, ape, research, structural, molecular |
has parent organization: University of California at San Diego; California; USA is parent organization of: MOCA is parent organization of: CARTA Libraries |
Mathers Foundation ; Donations |
nlx_51231 | SCR_000525 | Center for Academic Research and Training in Anthropogeny, Center for Academic Research & Training in Anthropogeny | 2026-08-15 11:21:53 | 1 | |||||||
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ALS Association Resource Report Resource Website 10+ mentions |
ALS Association (RRID:SCR_000442) | ALS Association | nonprofit organization | Established in 1985, The ALS Association is the only national non-profit organization fighting Lou Gehrig's Disease on every front. By leading the way in global research, providing assistance for people with ALS through a nationwide network of chapters, coordinating multidisciplinary care through certified clinical care centers, and fostering government partnerships, The Association builds hope and enhances quality of life while aggressively searching for new treatments and a cure. As the preeminent ALS organization, The Association leads the way in research, care services, public education, and public policy giving help and hope to those facing the disease. The Association's nationwide network of chapters provides comprehensive patient services and support to the ALS community. The mission of The ALS Association is to lead the fight to treat and cure ALS through global research and nationwide advocacy, while also empowering people with Lou Gehrig's Disease and their families to live fuller lives by providing them with compassionate care and support. The ALS Association has committed more than $58 million to find effective treatments and a cure for Lou Gehrig's Disease. Our global research effort has helped increase the number of scientists working on ALS, advanced new discoveries and treatments, and has shed light on the complex genetic and environmental factors involved in ALS. Diversity exemplifies The ALS Association's research philosophy. The Association spearheads investigator-initiated projects that originate from the minds of scientists. It also has ALS Association-initiated projects in which research ideas come from a small, blue ribbon committee of scientists who reach out with specific projects for designated scientists in the field. The ALS Association offers multi-year grants to established investigators, as well as one-year starter research awards. The Association is proud to administer The Milton Safenowitz Post-Doctoral Fellowship for ALS Research, which is the only post-doctoral fellowship for ALS research. In addition, The ALS Association's Sheila Essey Award, the premier ALS award, recognizes achievement in research. The ALS Association holds workshops each year that bring together scientists researching ALS and other neurodegenerative diseases to generate new research suggestions and fresh insight. In addition, our TREAT ALS (Transitional Research Advancing Therapy for ALS) initiative combines efficient new drug discovery with priorities set for existing drug candidates to accelerate clinical testing of compounds with promise for the disease. Our Clinical Management Research Program focuses on managing the care of people with ALS in such areas as nutrition, respiration, mobility and psychosocial needs. Since 1998, The Association has funded 21 clinical management research projects representing a total commitment of $750,000. The Association produces a series of manuals and videos as well as a DVD, called Living with ALS, that educate patients about all aspects of the disease. | research, clinical care center, treatment, cure, care service, public education, public policy, post-doctoral fellowship, clinical, grant, award | Amyotrophic Lateral Sclerosis | nif-0000-00449, Wikidata: Q4652439, grid.430438.8, ISNI: 0000 0004 0590 7963, Crossref funder ID: 100000971 | https://ror.org/00mwp5989 | SCR_000442 | Amyotrophic Lateral Sclerosis Association, ALS Association - Fighting Lou Gehrig's Disease, ALS Association | 2026-08-15 11:21:44 | 11 |
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