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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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FlowSorted.Blood.450k R package Resource Report Resource Website 1+ mentions |
FlowSorted.Blood.450k R package (RRID:SCR_018003) | data or information resource, data set | Illumina HumanMethylation data on sorted blood cell populations. | Illumina, human methylation, DNA, data, sorted blood cell, | PMID:22848472 | Free, Available to download, Freely available | SCR_018003 | 2026-08-15 11:31:39 | 3 | ||||||||||
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Virginia University School of Medicine Genome Analysis and Technology Core Facility Resource Report Resource Website 50+ mentions |
Virginia University School of Medicine Genome Analysis and Technology Core Facility (RRID:SCR_018883) | GATC | service resource, access service resource, core facility | Core offers instrumentation and expertise in all areas of bulk and single cell NGS genomics and transcriptomics, as well as training to access core shared instrumentations. Services include RNA Seq, CHIP Seq, ATAC Seq, Amplicon DNA Seq, 16S ribosomal gene sequencing, shot gun sequencing for small genomes and whole exome sequencing.10X Genomics resources include single cell CNV, VDJ, and 3 or 5 RNA seq as well as linked reads.Core provides real time and droplet digital PCR services most suitable for targeted gene expression, SNP genotyping and CNV discovery. | USEDit, genome analysis, NGS genomic, transcriptomics, RNA Seq, CHIP Seq, ATAC Seq, Amplicon DNA Seq, 16S ribosomal gene sequencing, shot gun sequencing, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: University of Virginia School of Medicine; Virginia; USA |
Open | ABRF_1024 | https://coremarketplace.org/?FacilityID=1024 | SCR_018883 | University of Virginia School of Medicine Genome Analysis and Technology Core Facility, UVA Genome Analysis and Technology Core, University of Virginia UVA Genome Analysis and Technology Core, Genome Analysis and Technology Core | 2026-08-15 11:31:29 | 86 | ||||||
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South Carolina Medical University Bioenergetics Profiling Core Facility Resource Report Resource Website |
South Carolina Medical University Bioenergetics Profiling Core Facility (RRID:SCR_017953) | service resource, access service resource, core facility | Core provides several technologies that enable researchers to quantify fluxes of these metabolic reactions in cells, tissues, organoids and small animal models such as zebrafish embryos and nematodes.Technologies include high resolution respirometry using XF technology from Seahorse Biosciences/Agilent. Instrumentation utilizes 96-well microplates to provide sufficient sample numbers to provide flux profiles of glycolysis, mitochondrial respiration, fatty acid oxidation, glutamine utilization and other related metabolic processes. Rapid, high-throughput imaging optimized to XF plate architecture provides normalization of cell/tissue numbers, health, and other.Provides training, data analyses support and aid in experimental design. | Bioenergetic, profiling, quantify, metabolic, reaction, cell, tissue, organoid, animal, model, zebrafish, embryo, nematode, resirometry, flux, profile, mitochondrial, respiration, glycolysis, fatty, acid, oxidation, glutamine, training, data, analysis, service, core, ABRF | is listed by: ABRF CoreMarketplace | ABRF_986 | SCR_017953 | Bioenergetics Profiling Core | 2026-08-15 11:31:38 | 0 | |||||||||
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University of Melbourne Biological Optical Microscopy Platform (BOMP) Core Facility Resource Report Resource Website 1+ mentions |
University of Melbourne Biological Optical Microscopy Platform (BOMP) Core Facility (RRID:SCR_018888) | BOMP | service resource, access service resource, core facility | Core provides access to fluorescence microscopy equipment including Deltavision OMX Blaze Super Resolution (3D-SIM/SMLM), Leica SP8 inverted confocal, La Vision Ultramicroscope II Lightsheet Microscope,Nikon Andor WD spinning disk, Nikon A1R inverted confocal x2, Olympus FV-MPERS Multi Photon,Olympus FV3000 inverted confocal (live cell) ISS Fast-FLIM, Perkin Elmer Operetta High Content Imaging, Zeiss LSM800 upright Airyscan, Zeiss LSM880 upright Airyscan fast, Zeiss Elyra/LSM880 inverted (live cell), super resolution (Airyscan/SMLM). Staff can help with image analysis, super resolution microscopy, fluorescence lifetime imaging microscopy, high content imaging and light sheet microscopy techniques. | Fluorescence microscopy, microscope, instrument, equipment, image analysis, imaging microscopy, light sheet microscopy, imaging, ABRF, ABRF |
uses: Zeiss LSM5 PASCAL confocal laser scanning microscope system is listed by: ABRF CoreMarketplace has parent organization: University of Melbourne; Victoria; Australia |
Open | ABRF_5666 | https://coremarketplace.org/RRID:SCR_018888/?citation=1, https://microscopy.unimelb.edu.au/ | https://research.unimelb.edu.au/facilities-and-resources/research-infrastructure/biological-optical-microscopy-platform | SCR_018888 | Biological Optical Microscopy Platform | 2026-08-15 11:31:29 | 5 | |||||
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Colorado University at Boulder BioChemistry Krios Electron Microscopy Core Facility Resource Report Resource Website 1+ mentions |
Colorado University at Boulder BioChemistry Krios Electron Microscopy Core Facility (RRID:SCR_019057) | BioKEM | service resource, access service resource, core facility | Provides single particle cryo EM and cryo tomography of plunge frozen samples. Using Titan Krios G3i for high resolution data collection on Gatan K3 Direct Detection Camera facility is able to offer data collection at atomic level resolution.Facility uses Serial EM for SPA and cryo-ET data acquisition. | Electron microscopy, single particle cryon EM, cryo tomography, frozen sample, data collection, atomic level resolution, USEDit, Acquisition and Analysis for Electron Tomography, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Colorado Boulder; Colorado; USA |
SCR_019057 | BioChemistry Krios Electron Microscopy, BioChemistry Krios Electron Microscopy facility | 2026-08-15 11:31:40 | 9 | |||||||||
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JLIN Resource Report Resource Website 1+ mentions |
JLIN (RRID:SCR_009247) | JLIN | software application, software resource | Software application designed for customizable, intuitive visualisation of LD analysis across all common computing platforms. Customisation allows the researcher to choose particular visualisation, statistical measures and measurement ranges. JLIN also allows the researcher to export images of the LD visualisation in several common document formats. As there appears to be no single best measure of LD under all possible circumstances, JLIN allows the researcher to visually compare and contrast the results of a range of statistical measures on the input data set(s). These measures include the commonly used D'' and R2 statistics and empirical p-values. New additions include calculation of HWE, a completely revamped interface, and a numer of minor bug fixes. We have added a display measure to show marker distances visually, embedded fonts to improve image clarity and additional LD measures including d,OR,Pexcess and Q. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, any with java 1.5 support | is listed by: Genetic Analysis Software | nlx_154415 | SCR_009247 | Java based LINkage disequilibrium plotter | 2026-08-15 11:29:51 | 9 | ||||||||
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JOINMAP Resource Report Resource Website 1000+ mentions |
JOINMAP (RRID:SCR_009248) | JOINMAP | software application, software resource | Software application for construction of genetic linkage maps for several types of mapping populations: BC1, F2, RILs, (doubled) haploids, outbreeders full-sib family. Can combine (''join'') data derived from several sources into an integrated map. Further: linkage group determination, automatic phase determination for outbreeders full-sib family, several diagnostics, and map charts. Everything available in an intuitive MS-Windows user interface. (entry from Genetic Analysis Software) | gene, genetic, genomic, ansi c, delphi, ms-windows, (95/98/me/nt4.0/2000) | is listed by: Genetic Analysis Software | nlx_154416 | SCR_009248 | Software for the calculation of genetic linkage maps | 2026-08-15 11:29:42 | 1072 | ||||||||
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IMPUTE Resource Report Resource Website 500+ mentions |
IMPUTE (RRID:SCR_009245) | IMPUTE | software application, software resource | Software application for estimating (imputing) unobserved genotypes in SNP association studies. The program is designed to work seamlessly with the output of the genotype calling program CHIAMO and the population genetic simulator HAPGEN, and it produces output that can be analyzed using the program SNPTEST. (entry from Genetic Analysis Software) | gene, genetic, genomic |
is listed by: Genetic Analysis Software is listed by: SoftCite |
nlx_154411 | SCR_009245 | 2026-08-15 11:29:42 | 639 | |||||||||
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MDR-PDT Resource Report Resource Website 1+ mentions |
MDR-PDT (RRID:SCR_009243) | MDR-PDT | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154406 | SCR_009243 | Multifactor Dimensionality Reduction and genotype Pedigree Disequilibrium Test | 2026-08-15 11:29:53 | 2 | ||||||||
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INTERSNP Resource Report Resource Website 10+ mentions |
INTERSNP (RRID:SCR_009244) | INTERSNP | software application, software resource | Software application for genome-wide interaction analysis (GWIA) of case-control SNP data. SNPs are selected for joint analysis using a priori information. Sources of information to define meaningful strategies can be statistical evidence (single marker association at a moderate level, computed from the own data) and genetic/biologic relevance (genomic location, function class or pathway information). (entry from Genetic Analysis Software) | gene, genetic, genomic, c/c++, unix, ms-windows, macos | is listed by: Genetic Analysis Software | nlx_154409 | SCR_009244 | genome-wide association and INTERaction analysis of SNP | 2026-08-15 11:29:51 | 18 | ||||||||
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HTSNPER Resource Report Resource Website 1+ mentions |
HTSNPER (RRID:SCR_009242) | HTSNPER | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 4, 2023.Java program for characterizing the haplotype block structure and selecting haplotype tagging SNP (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, jvm, ms-windows, linux | is listed by: Genetic Analysis Software | PMID:15740612 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154403 | SCR_009242 | Haplotype Tagging SNPer | 2026-08-15 11:29:42 | 2 | ||||||
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HS-TDT Resource Report Resource Website 1+ mentions |
HS-TDT (RRID:SCR_009240) | HS-TDT | software application, software resource | Software application for testing association using tightly linked markers in nuclear pedigrees (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, ms-windows, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154401, biotools:hs-tdt | https://bio.tools/hs-tdt | SCR_009240 | Haplotype Sharing Transmission Disequilibrium Test | 2026-08-15 11:29:42 | 4 | |||||||
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MARGARITA Resource Report Resource Website 1+ mentions |
MARGARITA (RRID:SCR_009279) | MARGARITA | software application, software resource | Software application that infers genealogies from population genotype data and uses these to map disease loci. These genealogies take the form of the Ancestral Recombination Graph (ARG). The ARG defines a genealogical tree for each locus, and as one moves along the chromosome the topologies of consecutive trees shift according to the impact of historical recombination events. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154460 | SCR_009279 | 2026-08-15 11:29:53 | 2 | |||||||||
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MAPINSPECT Resource Report Resource Website 100+ mentions |
MAPINSPECT (RRID:SCR_009277) | MAPINSPECT | software application, software resource | Software application that can be used to compare linkage maps obtained from different sources/populations/etc.. It will draw the linkage maps and look for common marker names, these are then connected in the drawing with dashed lines. All neighboring maps are compared in this way. Images can be printed and saved. Orders of the MAPs (ie which map is compared with which other map) can be changed and maps can be flipped (right mouse button). remark: MapComp bears close relationships with the GGT software package (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, delphi pascal, ms-window (32-bit) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154458 | SCR_009277 | GGT | 2026-08-15 11:29:51 | 324 | |||||||
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MAPDISTO Resource Report Resource Website 100+ mentions |
MAPDISTO (RRID:SCR_009275) | MAPDISTO | software application, software resource | Software program for mapping genetic markers in experimental segregating populations like backcross, doubled haploids, single-seed descent. Its specificity is to propose recombination fraction estimates in case of segregation distortion. It can (1) compute and draw genetic maps easily and quickly through a graphical interface; (2) facilitate the analysis of marker data showing segregation distortion due to differential viability of gametes or zygotes. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-excel | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154456 | SCR_009275 | 2026-08-15 11:29:43 | 116 | ||||||||
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MAP/MAP+/MAP+H/MAP2000 Resource Report Resource Website |
MAP/MAP+/MAP+H/MAP2000 (RRID:SCR_009272) | MAP/MAP+/MAP+H/MAP2000 | software application, software resource | Software application for multiple pairwise linkage analysis under interference (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, unix, sunos | is listed by: Genetic Analysis Software | nlx_154453 | SCR_009272 | (MAP+H is the radiation Hybrid module of MAP+) | 2026-08-15 11:29:53 | 0 | ||||||||
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MANTEL-STRUCT Resource Report Resource Website 1+ mentions |
MANTEL-STRUCT (RRID:SCR_009271) | MANTEL-STRUCT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application that tests for population structure through the use of Mantel tests (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154451 | SCR_009271 | 2026-08-15 11:29:51 | 4 | ||||||||
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MALDSOFT Resource Report Resource Website |
MALDSOFT (RRID:SCR_009269) | MALDSOFT | software application, software resource | Software program for admixture mapping of complex trait loci, using case-control data. The samples should come from a recently-admixed population; additional ''learning'' samples from the parental populations are helpful. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, linux, ms-windows, (dos/window...) | is listed by: Genetic Analysis Software | nlx_154449 | SCR_009269 | 2026-08-15 11:29:53 | 0 | |||||||||
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LRTAE Resource Report Resource Website 1+ mentions |
LRTAE (RRID:SCR_009265) | LRTAE | software application, software resource | Software application to compute a likelihood ratio test statistic that increases power to detect genetic association in the presence of phenotype, genotype, and/or haplotype misclassification errors. In addition, the program produces asymptotically unbiased estimates of frequency parameters. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-windows, unix, solaris, linux | is listed by: Genetic Analysis Software | nlx_154443 | SCR_009265 | Likelihood Ratio Test Allowing for Errors | 2026-08-15 11:29:51 | 1 | ||||||||
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LOT Resource Report Resource Website |
LOT (RRID:SCR_009261) | LOT | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows, linux, unix, solaris | is listed by: Genetic Analysis Software | nlx_154440 | http://peace.med.yale.edu/pub/LOT/ | SCR_009261 | Linkage analysis of Ordinal Traits | 2026-08-15 11:29:42 | 0 |
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