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http://bioen-compbio.bioen.illinois.edu/PSAR-Align/
Software for improving multiple sequence alignment using probabilistic sampling.
Proper citation: PSAR-Align (RRID:SCR_011814) Copy
Non profit research organization for genome sequences to advance understanding of biology of humans and pathogens in order to improve human health globally. Provides data which can be translated for diagnostics, treatments or therapies including over 100 finished genomes, which can be downloaded. Data are publicly available on limited basis, and provided more extensively upon request.
Proper citation: Wellcome Trust Sanger Institute; Hinxton; United Kingdom (RRID:SCR_011784) Copy
Public research university located in Glasgow, Scotland.
Proper citation: University of Strathclyde; Glasgow; United Kingdom (RRID:SCR_011705) Copy
http://www.csd.uwo.ca/~ilie/HiTEC/
Accurate error correction in high-throughput sequencing data.
Proper citation: HiTEC (RRID:SCR_011826) Copy
Public university in St Andrews, Fife, Scotland. It is the oldest of the four ancient universities of Scotland and, following Oxford and Cambridge universities, the third-oldest university in the United Kingdom and English-speaking world.
Proper citation: University of St Andrews; Scotland; United Kingdom (RRID:SCR_011706) Copy
https://bioinf.eva.mpg.de/patman/
Software that searches for short patterns in large DNA databases, allowing for approximate matches., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: PatMaN (RRID:SCR_011821) Copy
Public research university in Tampa, Florida. It is part of the State University System of Florida.
Proper citation: University of South Florida; Florida; USA (RRID:SCR_011702) Copy
http://bix.ucsd.edu/projects/hammer/
A tool for error correction of short read datasets with non-uniform coverage, such as single-cell data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: Hammer (RRID:SCR_011825) Copy
http://www.g-language.org/GenomeProjector/
A searchable database browser with zoomable user interface using Google Map API. Genome Projector currently contains 4 views: Genome map, Plasmid map, Pathway map, and DNA walk.
Proper citation: Genome Projector (RRID:SCR_011790) Copy
Proper citation: USDA Agricultural Research Service (RRID:SCR_011752) Copy
Private, coeducational, liberal arts college in Poughkeepsie, New York.
Proper citation: Vassar College; New York; USA (RRID:SCR_011758) Copy
https://hci-bio-app.hci.utah.edu/gnomex/
A Genomic Laboratory Information Management System (LIMS) and Data repository that can function as an experiment tracking and workflow management system for Core Facilities as well as an advanced data repository for storing and sharing genomic data sets.
Proper citation: GNomEx (RRID:SCR_011805) Copy
Software for searching DNA sequence databases for RNA structure and sequence similarities.
Proper citation: Infernal (RRID:SCR_011809) Copy
Public research university in Richmond, Virginia. MCV was founded in 1838 as the medical department of Hampden–Sydney College, becoming the Medical College of Virginia in 1854.
Proper citation: Virginia Commonwealth University; Virginia; USA (RRID:SCR_011767) Copy
http://www.ige.tohoku.ac.jp/joho/gmProject/gmhome.html
A graphical interface for comparative genomics.
Proper citation: GenomeMatcher (RRID:SCR_011800) Copy
http://www-ps.informatik.uni-tuebingen.de/itNew/?page_id=1160
Alignment visualization based on SuperGenome coordinates.
Proper citation: GenomeRing (RRID:SCR_011801) Copy
An interactive, web-based tool for comparative genomic visualization.
Proper citation: Gobe (RRID:SCR_011802) Copy
http://cas-bioinfo.cas.unt.edu/gsv/homepage.php
Software that allows users to upload files which contain synteny regions between two or more genomes and interactively visualize the synteny between them.
Proper citation: GSV (RRID:SCR_011803) Copy
Private research university in Winston-Salem, North Carolina.
Proper citation: Wake Forest University; North Carolina; USA (RRID:SCR_011772) Copy
Originally University College of the West Indies, is a public university system.
Proper citation: University of the West Indies; Kingston; Jamaica (RRID:SCR_011730) Copy
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