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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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C. elegans Gene Knockout Consortium Resource Report Resource Website 10+ mentions |
C. elegans Gene Knockout Consortium (RRID:SCR_003000) | C. elegans Gene Knockout Consortium | biomaterial supply resource, material resource, organism supplier | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. The mission of the C. elegans Gene Knockout Consortium is to facilitate genetic research of this important model system through the production of deletion alleles at specified gene targets. We choose targets based on investigator requests. Strains produced by the consortium are freely available with no restrictions to any investigator. At one time, our capacity dictated that we restrict requests to five per lab. This restriction no longer holds. Investigators are encouraged especially to register requests for functionally related groups of genes. Consortium strains are distributed by the C. elegans Genetic Center (CGC). In most cases, when you use the Consortium web site to request an existing allele, your request is forwarded automatically to the CGC. However, if you indicate that an existing allele is not satisfactory for your research, (for whatever reason), you may request that we generate another allele for the same target. Any information generated by the Consortium is entered into the official C. elegans data repository, WormBase. | gene, locus, knockout, genetic, research, model, allele, target, strain, deletion allele, gene target |
is related to: Caenorhabditis Genetics Center is related to: WormBase has parent organization: Oklahoma Medical Research Foundation |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30230 | SCR_003000 | C. elegans Gene Knockout Consortium | 2026-08-03 09:32:10 | 30 | |||||||
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RIKEN BioResource Center Resource Report Resource Website 1000+ mentions |
RIKEN BioResource Center (RRID:SCR_003250) | BRC, RIKEN BRC | biomaterial supply resource, material resource, organism supplier | RIKEN BRC contributes to advancement of life science research by collecting, preserving and distributing biological resources such as experimental animals, experimental plants, cultured cell lines, genetic materials (DNA), and associated bioinformatics. The RIKEN BRC develops novel bioresources to promote scientific research and new technologies to increase the value of bioresources, and also to implement effective procedures for the preservation, quality control and usage of bioresources. The RIKEN BRC is working closely with institutions in Japan and abroad. | RIN, Resource Information Network, experimental animal, experimental plant, cultured cell line, dna, animal, plant, cell line, genetic material, virus, gene, cultured cell, embryo, sperm, tissue, organ, seed, cell, recombinant host, bioresource, FASEB list, RRID Community Authority |
is listed by: One Mind Biospecimen Bank Listing is listed by: Resource Information Network is related to: Federation of International Mouse Resources is related to: MGI strains has parent organization: RIKEN Tsukuba Institute; Kansai; Japan is parent organization of: JCM works with: Cellosaurus works with: International Mouse Strain Resource |
PMID:19448331 PMID:34532769 |
Free, Freely available | nif-0000-31407 | SCR_003250 | RIKEN Tsukuba Institute RIKEN BioResource Center | 2026-08-03 09:32:02 | 2208 | ||||||
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CreZOO Resource Report Resource Website |
CreZOO (RRID:SCR_006132) | CreZOO | biomaterial supply resource, material resource, organism supplier | The CreZOO database is the European virtual repository of Cre and other targeted conditional driver strains. CreZOO is being developed in the context of the CREATE consortium, a core of major European and international mouse database holders and research groups involved in conditional mutagenesis. Its aim is to capture and disseminate extant and new information on Cre driver strains. CreZOO also aims to contribute data to the CREATE portal for worldwide access of related information. All transgenic strains carry detailed information on the promoter, specificity (using Adult Mouse Anatomy terms and Theiler Stages) and expressed gene(s) including IDs and direct links where available. Allele details are also presented, in addition to strain, background and availability (in the form of live mice, cryopreserved embryos or sperm etc) information (including EMMA, MGI, MMRRC etc hyperlinks where available). Handling and genotyping details (in the form of documents or hyperlinks) together with all relevant publications are clearly presented with PMID(s) and direct PubMed links. | cre, gene expression, mouse model, gene function, disease pathology, cre driver strain, cre driver, strain, promoter, allele, inducibility, expression pattern, live mouse, embryo, sperm, embryonic stem cell, promoter, gene, allele |
is listed by: One Mind Biospecimen Bank Listing has parent organization: CREATE has parent organization: BSRC Al. Fleming; East Attica; Greece |
European Union FP7 FP7-HEALTH-2007-223487-CREATE | PMID:22730454 | Database access is free of charge and there are no registration requirements for data querying. | nlx_151616 | SCR_006132 | 2026-08-03 09:32:54 | 0 | ||||||
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MouseBook Resource Report Resource Website 10+ mentions |
MouseBook (RRID:SCR_006358) | MouseBook | biomaterial supply resource, material resource, organism supplier | Databases and portal to data and ordering mouse strains from MRC Harwell including mouse stocks in FESA (Frozen Embryo and Sperm Archive), mutants from the mutagenesis screen, the ENU DNA archive, standardized phenotyping procedures, imprinting genes and chromosome anomalies. The portal integrates curated information from the MRC Harwell stock resource, and other Harwell databases, with information from external data resources to provide added value information above and beyond what is available through other routes such as IMSR (International Mouse Stain Resource). MouseBook can be searched either using an intuitive Google-style free text search or using the Mammalian Phenotype Ontology (MP) tree structure. Text searches can be on gene, allele, strain identifier (e.g. MGI ID) or phenotype term and are assisted by automatic recognition of term types and autocompletion of gene and allele names covered by the database. Results are returned in a tabbed format providing categorized results identified from each of the catalogs in MouseBook. Individual results lines from each catalog include information on gene, allele, chromosomal location and phenotype and provide a simple click-through link to further information as well as ordering the strain. The infrastructure underlying MouseBook has been designed to be extensible, allowing additional data sources to be added enabling other sites to make their data directly available through MouseBook. | mutant mouse strain, gene, allele, phenotype, embryonic mouse, embryo, sperm, live, chromosomal location, mutant mouse line, imprint, standard operating procedure, bio.tools |
is listed by: One Mind Biospecimen Bank Listing is listed by: Debian is listed by: bio.tools is related to: MPO |
Motor neuron disease, Chromosomal anomaly | MRC | PMID:19854936 | Public | nlx_152127, biotools:mousebook | https://bio.tools/mousebook | SCR_006358 | Mouse Book | 2026-08-03 09:33:06 | 18 | |||
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National Resource Center for Cephalopods Resource Report Resource Website 1+ mentions |
National Resource Center for Cephalopods (RRID:SCR_002864) | NRCC | biomaterial supply resource, material resource, organism supplier | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. The center serves the biomedical research community's increased needs for alternative invertebrate models by maintaining a consistent year-round supply of live cephalopod mollusks. These animals are suitable for a wide range of physiological and molecular biological investigations. Investigations are being conducted in the area of life history related to improved animal husbandry. Further studies focus on improving culture system design through development of computer automation and innovative water filtration technology. Current biomedical research on cephalopods includes neurophysiology of the giant axon; anatomy and neurophysiology of the equilibrium receptor organ as a comparative model of the vestibular system of invertebrates; chemoreception, basic nutrition, and protein metabolism; cellular receptor function; and brain, behavior, and learning. Services Provided: The center has built a computer-automated, environmentally controlled, recirculating seawater laboratory for the purpose of culturing cephalopods. The tank systems can be used to conduct a variety of experiments never before possible with cephalopods. Visiting researchers have access to dedicated facilities, including wet and dry laboratory space, office space, computer support and accommodations, as well as priority access to all available live animal resources. Off-site investigators can have live animals, dissected animal tissues/body fluids from all life stages, and a variety of molecular reagents (gene libraries and clones) delivered year-round. Staff expertise and an extensive literature library are available. All life stages of the squid (Sepioteuthis lessoniana) and the common cuttlefish (Sepia officinalis) are available year-round from laboratory culture populations. The sepiolid squid (Euprymna scolopes) can also be cultured on request. The squid Lolliguncula brevis is available year-round from local waters; the squids Loligo opalescens, L. pealeii, and L. plei can be obtained seasonally on request. The chambered nautilus, Nautilus pompilius, and Octopus bimaculoides are available on request. Animal costs vary by species and size. Any tissue or body fluid from these animals can also be provided. Fees for special services are negotiated on a case-by-case basis. | euprymna scolopes, function, gene, anatomy, animal, axon, behavior, biological, biomedical, brain, cellular, cephalopod mollusk, chemoreception, clone, culture, cuttlefish, invertebrate, inverteprate, laboratory, learning, lolliguncula brevis, metabolism, model, molecular, nautilus pompilius, neurophysiology, nutrition, octopus bimaculoides, organ, physiological, protein, reagent, receptor, research, sepia officinalis, sepiolid squid, sepioteuthis lessoniana, squid | has parent organization: University of Texas System; Texas; USA | National Institutes of Health ; National Center for Research Resources ; Texas Institute of Oceanography |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-25474 | SCR_002864 | National Resource Center for Cephalopods | 2026-08-03 09:32:09 | 3 | ||||||
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GlimmerHMM Resource Report Resource Website 500+ mentions |
GlimmerHMM (RRID:SCR_002654) | GlimmerHMM | software resource, source code | A gene finder based on a Generalized Hidden Markov Model (GHMM). Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models . Currently, GlimmerHMM's GHMM structure includes introns of each phase, intergenic regions, and four types of exons (initial, internal, final, and single). | gene, hidden markov model |
is related to: Glimmer has parent organization: Johns Hopkins University; Maryland; USA |
NIH ; NLM R01-LM06845; NLM R01-LM007938 |
PMID:15145805 | Free, Available for download, Freely available | nlx_156092 | SCR_002654 | GlimmerHMM - Eukaryotic Gene-Finding System | 2026-08-03 09:32:04 | 576 | |||||
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PROGENY Resource Report Resource Website 100+ mentions |
PROGENY (RRID:SCR_006647) | Progeny | software application, commercial organization, software resource, data management software | Fully customizable, comprehensive genetic pedigree and clinical data management software including a multi-user relational database with an integrated pedigree drawing component to manage genetic and pedigree data in one database. Manage Pedigrees, Individuals, SNPs, STRs, Samples, Plates, Genotypes and exports to multiple analysis platforms. (entry from Genetic Analysis Software) * LIMS software, providing advanced sample tracking and management (including functionality to generate and record barcodes) and configurable workflows for your specific environment. * Full genotype management gives users the ability to track not only family-based studies, but Whole Genome Association studies containing 1000''s of samples with large arrays. | gene, genetic, genomic, c++, active x control, ms-windows, pedigree, clinical, genotype, data management, drawing, family history, questionnaire, sample, lab management, FASEB list |
is listed by: OMICtools is listed by: Genetic Analysis Software |
nlx_154553, OMICS_00216 | SCR_006647 | Progeny Software LLC, Progeny Software | 2026-08-04 09:41:39 | 407 | ||||||||
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Java Treeview Resource Report Resource Website 50+ mentions |
Java Treeview (RRID:SCR_016916) | TreeView | data processing software, data visualization software, software application, software resource | Software as a cross platform gene expression visualization tool. Extensible viewer for microarray data in the PCL or CDT format. Interactive display of clustered gene expression data. Java application for visualizing large data matrices. It can load a dataset, cluster it, browse it, customize its appearance and export it into a figure. | gene, expression, data, visualization, microarray, interactive, display, cluster, dataset |
is related to: University of Hamburg; Hamburg; Germany has parent organization: Princeton University; New Jersey; USA |
Free, Available for download, Freely available | https://bitbucket.org/TreeView3Dev/treeview3/ | SCR_016916 | TreeView3, Treeview, Java TreeView | 2026-08-04 09:44:01 | 52 | |||||||
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Geneshot Resource Report Resource Website 1+ mentions |
Geneshot (RRID:SCR_017582) | data access protocol, software resource, web service | Software tool as search engine for ranking genes from arbitrary text queries. Enables to enter arbitrary search terms, to receive ranked lists of genes relevant to search terms. Returned ranked gene lists contain genes that were previously published in association with search terms, as well as genes predicted to be associated with terms based on data integration from multiple sources. Search results are presented with interactive visualizations. | Ranking, gene, arbitrary, text, query, list, predict, association, data, integration, interactive, visualization, bio.tools |
is listed by: Debian is listed by: bio.tools |
NHLBI U54 HL127624; NCI U24 CA224260; NIGMS T32 GM062754; NIH Office of the Director OT3OD025467 |
PMID:31114885 | Free, Freely available | biotools:Geneshot | https://bio.tools/Geneshot | SCR_017582 | 2026-08-04 09:44:14 | 4 | ||||||
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BARS Resource Report Resource Website 10+ mentions |
BARS (RRID:SCR_009123) | BARS | software application, software resource | Software application that is a statistical method that bridges the gap between single-locus and haplotype-based tests of association. It is based on the non-parametric regression techniques embodied by Bayesian Adaptive Regression Splines. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, r, linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154204, biotools:bars, nlx_154228, SCR_009106 | https://bio.tools/bars | SCR_009123 | Bayesian Adaptive Regression Splines | 2026-08-04 09:42:17 | 39 | ||||||
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Clinker Resource Report Resource Website 100+ mentions |
Clinker (RRID:SCR_016140) | data processing software, data visualization software, software application, software resource | Software for a bioinformatics pipeline that generates a superTranscriptome from popular fusion finder outputs (JAFFA, tophatFusion, SOAP, deFUSE, Pizzly, etc). They can be then be either viewed in genome viewers such as IGV or through the included plotting feature developed with GViz. | fusion, chimeric, gene, bioinformatics, transcriptome, viewer, plotting, graph, visualization | Murdoch Children's Research Institute | Free, Available for download | SCR_016140 | Clinker - Fusion Super Transcript generator and Plotter | 2026-08-04 09:43:50 | 286 | |||||||||
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AIIA-GMT Resource Report Resource Website |
AIIA-GMT (RRID:SCR_016397) | data access protocol, software application, software resource, web service | THIS RESOURCE IS NO LONGER IN SERVICE. Documented August 14, 2018. An XML-RPC client of a web-service server which provides the service to recognize named entities in the biomedical articles. It is Gene Mention Tagger (GMT) for Biological Text Mining. | biomedical, article, gene, mention, tagger, biological, text, mining, research, journal | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_016397 | 2026-08-04 09:43:53 | 0 | |||||||||||
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Reflect Resource Report Resource Website 50+ mentions |
Reflect (RRID:SCR_002714) | Reflect | data access protocol, software application, software resource, web service | Web service that tags gene, protein, and small molecule names in any web page. Clicking on a tagged term opens a small popup showing summary information, and allows the user to quickly link to more detailed information. For each protein or gene, Reflect provides domain structure, sub-cellular localization, 3D structure, and interaction partners. For small molecules, it provides the chemical structure and interaction partners. Reflect can be installed as a plugin to Firefox or Internet Explorer, or can be used by entering a URL in the field provided. It can also be accessed programmatically via a REST or SOAP API, and a Reflect button can easily be added to any web page using Javascript or using a CGI proxy. Reflect was first-prize winner out of over 70 submissions in the Elsevier Grand Challenge, an international competition for systems that improve the way scientific information is communicated and used. Reflect can be edited and improved by the community. | text mining, semantic mark up, gene, protein, computational linguistics, small molecule, domain structure, sub-cellular localization, 3d structure, interaction, chemical structure |
is listed by: OMICtools is listed by: FORCE11 has parent organization: University of Copenhagen; Copenhagen; Denmark has parent organization: European Bioinformatics Institute |
PMID:19513049 | nif-0000-23349, OMICS_01196 | http://reflect.ws/ | SCR_002714 | Reflect: Protein small molecules | 2026-08-04 09:40:43 | 87 | ||||||
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Cistrome Resource Report Resource Website 10+ mentions |
Cistrome (RRID:SCR_000242) | data access protocol, software resource, web service | Web based integrative platform for transcriptional regulation studies. | Transcriptional, regulation, Chip, data, analysis, genome, gene, expression, motif, mining, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: Galaxy has parent organization: Harvard University; Cambridge; United States |
Dana-Farber Cancer Institute High Tech and Campaign Technology Fund ; National Basic Research Program of China ; NHGRI HG004069; NIDDK DK074967; NIDDK DK062434 |
PMID:21859476 | Free, Freely available | SCR_017663, biotools:cistrome, OMICS_02173 | http://cistrome.org/ap/root, https://bio.tools/cistrome | SCR_000242 | Galaxy Cistrome | 2026-08-04 09:40:05 | 16 | |||||
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GenNav Resource Report Resource Website 1+ mentions |
GenNav (RRID:SCR_000147) | GenNav | data access protocol, software resource, web service | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. GenNav searches GO terms and annotated gene products, and provides a graphical display of a term's position in the GO DAG. | image, gene, ontology or annotation browser |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: National Library of Medicine |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_149123 | SCR_000147 | 2026-08-04 09:40:04 | 1 | ||||||||
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Homology Maps Page Resource Report Resource Website 1+ mentions |
Homology Maps Page (RRID:SCR_001666) | data or information resource, topical portal, portal | This page provides quick access to the Comparative mapping functions available in the Map Viewer. Currently, comparative maps are calculated using HomoloGene orthology predictions. Once the gene pairs have been established, blocks of conserved syteny can be established using the positions of each gene object in their respective builds. Sponsors: This resource is supported by NCBI. | function, gene, comparative, homology, map, mapping, orthology, protein | has parent organization: NCBI | Free, Freely Available | nif-0000-25559 | SCR_001666 | Homology | 2026-08-05 10:43:25 | 2 | ||||||||
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Diabetes Disease Portal Resource Report Resource Website |
Diabetes Disease Portal (RRID:SCR_001660) | Diabetes Disease Portal | data or information resource, portal, data set, disease-related portal, topical portal | An integrated resource for information on genes, QTLs and strains associated with diabetes. The portal provides easy acces to data related to both Type 1 and Type 2 Diabetes and Diabetes-related Obesity and Hypertension, as well as information on Diabetic Complications. View the results for all the included diabetes-related disease states or choose a disease category to get a pull-down list of diseases. A single click on a disease will provide a list of related genes, QTLs, and strains as well as a genome wide view of these via the GViewer tool. A link from GViewer to GBrowse shows the genes and QTLs within their genomic context. Additional pages for Phenotypes, Pathways and Biological Processes provide one-click access to data related to diabetes. Tools, Related Links and Rat Strain Models pages link to additional resources of interest to diabetes researchers. | gene, quantitative trait locus, strain, diabetic complication, genome, gviewer, genomic, phenotype, pathway, biological process, chromosome, visualization, molecular function, cellular component, synteny |
is related to: NIDDK Information Network (dkNET) is related to: Gene Ontology has parent organization: Rat Genome Database (RGD) |
Type 1 diabetes, Type 2 diabetes, Diabetes, Obesity, Hyperlipidemia, Metaboic disease, Hypertension | Free, Freely Available | nlx_153942 | http://rgd.mcw.edu/rgdCuration/?module=portal&func=show&name=diabetes | SCR_001660 | 2026-08-05 10:43:27 | 0 | ||||||
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Salk Institute for Medical Research: Laboratory for Cognitive Neuroscience Resource Report Resource Website |
Salk Institute for Medical Research: Laboratory for Cognitive Neuroscience (RRID:SCR_001851) | Salk Institute LCN | data or information resource, topical portal, portal | The Salk Institute's Laboratory for Cognitive Neuroscience (LCN) is dedicated to the study of the neural and genetic underpinnings of language and cognition. The LCN organizes its resources into two research foci: Linking Gene, Brain, and Cognition, and Language, Modality and the Brain. Linking Gene, Brain, and Cognition: Behavioral Neurogenetics: - This research is designed to increase the understanding of genetically based disorders, to investigate the consequences of genetic alterations on the development of the brain, and to explore the resulting alteration of cognitive capabilities. Language, Modality, and the Brain: - The focus of this research is to obtain a greater understanding of how language and cognition are represented in the brain. Sponsors: This resource is supported by LCN. | gene, genetically based disorder, genetic alteration, genetics, brain, cognition, cognitive neuroscience, development, modality, neural, language | Free, Freely available | nif-0000-10415 | http://www.lcn.salk.edu/ | SCR_001851 | Salk Institute LCN | 2026-08-05 10:43:28 | 0 | |||||||
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Mining On-Line Expert on MedLine Resource Report Resource Website 1+ mentions |
Mining On-Line Expert on MedLine (RRID:SCR_001848) | software application, software resource, data analysis service, production service resource, service resource, text-mining software, analysis service resource | MedMOLE improves the comprehension of microarray experimental results by grouping co-regulated genes on the basis of the informational content of MEDLINE documents. The tool relies on two components: a gene name extractor and a mining algorithm. The name extractor is based on existing dictionaries of gene names and aliases. The mining algorithm analyses the co-occurrences of words in the selected documents in order to automatically interpret the context, identify where the gene names appear, and map documents/genes into functional classes. DNA microarray technology is a high throughput method for gaining information on gene function. This large amount of data can be analyzed to identify groups of genes that share common expression characteristics, but the obtained results provide little information regarding the presence of functional biological correlations of genes within clusters. The published literature, on the other hand, provides a potential source of information to assist in interpretation of clustering results. We have developed a tool (MedMOLE) that improves the comprehension of microarray experimental results by grouping co-regulated genes on the basis of the informational content of MEDLINE documents. The tool relies on two components: a gene name extractor and a mining algorithm. The name extractor is based on existing dictionaries of gene names and aliases. The mining algorithm analyses the co-occurrences of words in the selected documents in order to automatically interpret the context, identify where the gene names appear, and map documents/genes into functional classes. Microarray transcriptional profiling is a powerful tool used in the study of transcriptional control mechanisms. An important point in the analysis of microarray data is the identification of hidden correlations between the differentially expressed genes generated upon some kind of cell stimulus. Functional annotation is an important topic for microarray data mining, however this is quite limited for complex organisms (e.g. H. sapiens, M. musculus) where a limited number of genes are well characterized and annotated. However, functional data are rapidly accumulating in the scientific literature and most of them are collected by MEDLINE, a database that contains over 11,000,000 biomedical journal citations. A microarray analysis usually generates few hundred of differentially expressed genes and, after statistical validation of the data and transcription profiles clustering, biologists try to identify genes functionally correlated by scientific literature analysis. Even if some tools have been recently developed to simplify information extraction on the MEDLINE database, reading every article requires too much time and labor. Therefore, it is necessary to have some kind of intelligent information extracting system that recognizes gene names inside the texts. The analysis of text documents (e.g. MEDLINE abstracts) can be approached by two different points of view: text mining and information extraction (I.E.). The former aims at the automatic identification of groups of documents that share the same patterns of words, and thus refer to the same topic or theme. The latter aims at providing a structured representation of the textual information and requires a pre-definition of entities and relationships to be looked for inside texts. Thus while the text mining algorithms are general purpose, the information extraction algorithms are specific to the application. Furthermore, the text mining approach is explorative and enables the discovery of new concepts and relations while information extraction only extracts those elements that have already been defined. These two approaches can be integrated: information extraction tools generate databases that can be analyzed using data mining techniques, and, on the other side, text mining tools might take advantage of specific domain information extracted using I.E. techniques. MedMOLE takes advantage of text mining techniques, and simplifies the extraction of functional knowledge by literature abstracts directly/indirectly related to differentially expressed genes identified by microarray technology. Sponsors: This work was partially supported by PRIN 2001 and FIRB 2002 grants. | experimental, extractor, function, functional, gene, algorithm, cell, characteristic, class, dna, informational, literature, mechanism, medline, medline interfaces, microarray, mining, organism, stimulus, technology, transcriptional | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21258 | SCR_001848 | MedMOLE | 2026-08-05 10:43:28 | 1 | |||||||||
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AutDB Resource Report Resource Website 10+ mentions |
AutDB (RRID:SCR_001872) | AutDB | data or information resource, data repository, database, storage service resource, service resource | Curated public database for autism research built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The genetic information includes data from linkage and association studies, cytogenetic abnormalities, and specific mutations associated with ASD. New gene submissions are welcome. Modules: * Human Gene: thoroughly annotated list of genes that have been studied in the context of autism, with information on the genes themselves, relevant references from the literature, and the nature of the evidence. Uniquely, SFARI Gene incorporates information on both common and rare variants. * Animal Model: information about lines of genetically modified mice that represent potential models of autism. This information includes the nature of the targeting construct, the background strain and, most importantly, a thorough summary of the phenotypic features of the mice that are most relevant to autism. * Protein Interaction (PIN): compilation of all known direct protein interactions for those gene products implicated in autism. It presents both graphical and tabular views of interactomes, highlighting connections between autism candidate genes. Each protein interaction is manually verified by consultation with the primary reference. * Copy Number Variant (CNV): a parallel resource providing genetic information about all known copy number variants linked to autism. * Gene Scoring: includes a "score" for each autism candidate gene, based on an assessment of the strength of human genetic evidence. | duplication, gene, genetic syndrome, genetic variation, allelic, autism, autism spectrum disorder, deletion, molecular function, molecular genetics, single-gene disruption, genetic association, genetic variation, allelic variant, copy number variant, cytogenetic, disruption, idiopathic asd, monogenic, mutation, polymorphism, human, animal model, mouse, protein interaction, sfari gene, phenotype, protein interaction, gene scoring, systems biology |
is listed by: NIF Data Federation is listed by: 3DVC is related to: Integrated Manually Extracted Annotation has parent organization: SFARI - Simons Foundation Autism Research Initiative |
Autism Spectrum Disorder, Autism | MindSpec: Informatics for Neurodevelopmental Conditions | PMID:19015121 | Free, Freely available | nif-0000-02587 | http://www.mindspec.org/products/autdb/, https://gene.sfari.org/autdb/ | http://autism.mindspec.org/autdb/ | SCR_001872 | AutDB - An Interface to Autism Research, Simons Foundation Autism Research Initiative Gene: Autism Database, SFARI Gene: AutDB, SFARI Gene, AutDB: a Genetic Database for Autism Spectrum Disorders | 2026-08-05 10:43:29 | 40 |
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