Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Rackspace Resource Report Resource Website 1+ mentions |
Rackspace (RRID:SCR_011875) | Rackspace | service resource | An open cloud company with performance Cloud Servers that offer 100% SSD storage & 10Gb Ethernet networking for your demanding applications. | cloud | is listed by: OMICtools | For a fee | OMICS_01207 | SCR_011875 | 2026-08-15 11:24:25 | 3 | ||||||||
|
VirtualBox Resource Report Resource Website 50+ mentions |
VirtualBox (RRID:SCR_011876) | VirtualBox | software resource | A general-purpose full virtualizer for x86 and AMD64/Intel64 hardware, targeted at server, desktop and embedded use. | is listed by: OMICtools | GNU General Public License, v2 | OMICS_01208 | SCR_011876 | 2026-08-15 11:24:36 | 99 | |||||||||
|
VMware Resource Report Resource Website 10+ mentions |
VMware (RRID:SCR_011878) | VMware | software resource | Software that virtualizes computing, from the data center to the cloud to mobile devices, to help customers be more agile, responsive, and profitable. | cloud, computing | is listed by: OMICtools | OMICS_01209 | SCR_011878 | 2026-08-15 11:24:25 | 23 | |||||||||
|
Genovo Resource Report Resource Website 100+ mentions |
Genovo (RRID:SCR_011911) | Genovo | software resource | Software for a novel de novo sequence assembler that discovers likely sequence reconstructions under the model. |
is listed by: OMICtools has parent organization: Stanford University; Stanford; California |
OMICS_01422 | SCR_011911 | Genovo - Metagenomic de novo Sequencing | 2026-08-15 11:24:37 | 227 | |||||||||
|
METAREP Resource Report Resource Website 1+ mentions |
METAREP (RRID:SCR_011926) | METAREP | data processing software, software application, data analysis software, software resource | A tool for high-performance comparative metagenomics that allows users to view, query, browse, and compare metagenomics annotation profiles from short reads or assemblies. Users can use statistical tests, hierarchical clustering, multidimensional scaling, and heat maps to compare multiple datasets at various functional and taxonomic levels. | microbiome, comparison, comparative metagenomics, annotation, short read, short assembly, bio.tools |
is listed by: OMICtools is listed by: Human Microbiome Project is listed by: Debian is listed by: bio.tools has parent organization: J. Craig Venter Institute |
DOI:10.1093/bioinformatics/btq455 | Open source | biotools:metarep, OMICS_01480 | https://bio.tools/metarep | SCR_011926 | 2026-08-15 11:24:37 | 8 | ||||||
|
DNAnexus Resource Report Resource Website 100+ mentions |
DNAnexus (RRID:SCR_011884) | DNAnexus | service resource | A cloud-based platform to support genomics at your organization. | genomics, cloud computing, genomic analysis | is listed by: OMICtools | OMICS_01217 | SCR_011884 | 2026-08-15 11:24:41 | 136 | |||||||||
|
Genestack Resource Report Resource Website 1+ mentions |
Genestack (RRID:SCR_011885) | Genestack | service resource | A universal collaborative platform for bioinformatics application development that allows users to store and share large data sets securely within and across organizations, with free access to public data from major databases. The platform includes open-source and proprietary genomics applications, working together independent of file formats. For developers an SDK, APIs and a marketplace are provided. | data sharing, data management, sequencing, quality control, exome, genome, variant call, somatic mutation, rna-seq, chip-seq, data analysis, visualization, computing, big data, next-generation sequencing | is listed by: OMICtools | OMICS_01218 | SCR_011885 | 2026-08-15 11:24:25 | 2 | |||||||||
|
Globus Genomics Resource Report Resource Website 10+ mentions |
Globus Genomics (RRID:SCR_011887) | Globus Genomics | storage service resource, service resource, data repository | Software-as-a-service for big data management offering fast, reliable, secure file transfer and sharing services to non-profit researchers. It combines state-of-the-art algorithms, data management tools, a graphical workflow environment, and an elastic computing infrastructure making it easy to manipulate, store, and share your data, no matter how big it gets. | data sharing, data management, genomics |
is listed by: OMICtools has parent organization: Argonne National Laboratory |
OMICS_01220 | SCR_011887 | 2026-08-15 11:24:41 | 26 | |||||||||
|
Mega BLAST Resource Report Resource Website 100+ mentions |
Mega BLAST (RRID:SCR_011920) | Mega BLAST | software resource | Software that uses the greedy algorithm for nucleotide sequence alignment search. |
is listed by: OMICtools has parent organization: NCBI |
OMICS_01435 | SCR_011920 | 2026-08-15 11:24:37 | 281 | ||||||||||
|
UCLUST algorithm Resource Report Resource Website 50+ mentions |
UCLUST algorithm (RRID:SCR_011921) | UCLUST | software resource | Algorithm that divides a set of sequences into clusters | is listed by: OMICtools | PMID:20709691 | OMICS_01448 | SCR_011921 | 2026-08-15 11:24:42 | 57 | |||||||||
|
EBARDenovo Resource Report Resource Website 1+ mentions |
EBARDenovo (RRID:SCR_011890) | EBARDenovo | software resource | Highly accurate de novo assembly of RNA-Seq with efficient chimera-detection. |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_01317 | SCR_011890 | 2026-08-15 11:24:41 | 2 | ||||||||||
|
IDBA-Tran Resource Report Resource Website 10+ mentions |
IDBA-Tran (RRID:SCR_011891) | IDBA-Tran | software resource | An iterative De Bruijn Graph De Novo short read assembler for transcriptome. | is listed by: OMICtools | OMICS_01318 | SCR_011891 | 2026-08-15 11:24:25 | 26 | ||||||||||
|
NextGENe Resource Report Resource Website 100+ mentions |
NextGENe (RRID:SCR_011859) | NextGENe | data processing software, software application, data analysis software, software resource | Software tool for Next Generation sequence analysis. Analytical partner for analysis of desktop sequencing data produced by Illumina iSeq, Miniseq, MiSeq, NextSeq, HiSeq, and NovaSeq systems, Ion Torrent Ion GeneStudio S5, PGM, and Proton systems as well as other platforms. Software runs on Windows Operating System, which provides biologist friendly interface. It does not require scripting or other bioinformatics support. | Next Generation Sequence Analysis, desktop sequencing data analysis, sequencing data | is listed by: OMICtools | Commercial license | OMICS_01131 | http://softgenetics.com/NextGENe.html | SCR_011859 | Next GENeration Sequence Analysis | 2026-08-15 11:24:24 | 381 | ||||||
|
RACER Resource Report Resource Website 10+ mentions |
RACER (RRID:SCR_011852) | RACER | software resource | A software program for correcting errors in sequencing data. | is listed by: OMICtools | OMICS_01108 | SCR_011852 | 2026-08-15 11:24:35 | 37 | ||||||||||
|
TIGRESS Resource Report Resource Website 1+ mentions |
TIGRESS (RRID:SCR_011977) | TIGRESS | software resource | Software providing a scoring technique for stability selection, which improves the performance of feature selection with LARS. TIGRESS can be run online through the GenePattern platform (GP-DREAM, http://dream.broadinstitute.org). | matlab |
is listed by: OMICtools is related to: GenePattern |
PMID:23173819 | OMICS_01687 | SCR_011977 | Trustful Inference of Gene REgulation using Stability Selection, TIGRESS: Trustful Inference of Gene REgulation using Stability Selection | 2026-08-15 11:24:38 | 9 | |||||||
|
NARWHAL Resource Report Resource Website 10+ mentions |
NARWHAL (RRID:SCR_011858) | NARWHAL | software resource | Automates the primary analysis of massive parallel sequencing data. |
is listed by: OMICtools has parent organization: Netherlands Bioinformatics Centre |
OMICS_01130 | SCR_011858 | 2026-08-15 11:24:40 | 10 | ||||||||||
|
orthAgogue Resource Report Resource Website 10+ mentions |
orthAgogue (RRID:SCR_011979) | orthAgogue | software resource | A software tool for high speed estimation of homology relations within and between species in massive data sets. | unix/linux |
is listed by: OMICtools has parent organization: Google Code |
PMID:24115168 | GNU General Public License, v3 | OMICS_01691 | SCR_011979 | orthAgogue: a tool for high speed estimation of homology relations within and between species in massive data sets. | 2026-08-15 11:24:44 | 32 | ||||||
|
SeqGene Resource Report Resource Website 1+ mentions |
SeqGene (RRID:SCR_011861) | SeqGene | software resource | An open-source software for mining next-gen sequencing datasets, focusing on post-alignment quality control, SNP and indel identification and annotation, RNA expression quantification, etc. |
is listed by: OMICtools has parent organization: SourceForge |
Open unspecified license | OMICS_01134 | SCR_011861 | 2026-08-15 11:24:35 | 2 | |||||||||
|
reddit Resource Report Resource Website 50+ mentions |
reddit (RRID:SCR_011983) | software resource | A subreddit dedicated to bioinformatics, computational genomics and systems biology. | is listed by: OMICtools | OMICS_01708 | SCR_011983 | 2026-08-15 11:24:39 | 95 | |||||||||||
|
Ibis Resource Report Resource Website 10+ mentions |
Ibis (RRID:SCR_011865) | Ibis | software resource | An accurate, fast and easy-to-use base caller for the Illumina sequencing system, which significantly reduces the error rate and increases the output of usable reads. | is listed by: OMICtools | OMICS_01151 | SCR_011865 | Improved base identification system | 2026-08-15 11:24:40 | 49 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
