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http://www.nitrc.org/projects/c8c8/
A small, stand-alone MatLab toolbox that measures sagittal cross-section thickness and area of the human corpus callosum from high-resolution T1 in vivo MR images. C8 takes as input affine normalized white matter segmentations derived from high-resolution (in-plane) T1 images and outputs both regional callosal thicknesses in three different formats and geometrically-defined regional areas in three different configurations. It is a small package that is easily configurable and modifiable and it measures callosa at the rate of several per minute.
Proper citation: C8: Corpus Callosum Computations (RRID:SCR_009449) Copy
https://www.brainproducts.com/
Commercial organization for hardware and software for neurophysiological research. Provides EEG and ERP amplifier systems, EEG recording caps, Data recording and analysis software, TMS Stimulator for combined EEG/TMS coregistrations and more.
Proper citation: Brain Products (RRID:SCR_009443) Copy
http://research-pub.gene.com/gmap/
THIS RESOURCE IS NO LONGER IN SERVICE, documented August 29, 2016. A software program for mapping and aligning cDNA sequences to a genome. The program maps and aligns a single sequence with minimal startup time and memory requirements, and provides fast batch processing of large sequence sets. The program generates accurate gene structures, even in the presence of substantial polymorphisms and sequence errors, without using probabilistic splice site models. Methodology underlying the program includes a minimal sampling strategy for genomic mapping, oligomer chaining for approximate alignment, sandwich DP for splice site detection, and microexon identification with statistical significance testing.
Proper citation: GMAP (RRID:SCR_008992) Copy
An Antibody supplier, Core facility
Proper citation: Cayman Chemical (RRID:SCR_008945) Copy
THIS RESOURCE IS NO LONGER IN SERVICE, documented on September 23, 2013. Software application / data analysis service where one can enter the alleles of commonly used STR by clicking the mouse. The algorithm calculates the paternity index and the Essen-Moeller probability of kinship for the deficiency- and the trio case. Everybody can use the network-software online after registering. The usage on the internet is free. Academic users can ask me to unlock an option to display the details (formulas/frequencies etc.) and to have an export-funktion to MS Word. The program is in German and (non-professional) English. An expansion to other languages is easy, if somebody helps us with the translation. For those who are interested to have the software running on their own intranet (for database security reasons) an individual agreement can be found. (entry from Genetic Analysis Software) (German version is: http://www.allelix.de)
Proper citation: ALLELIX (RRID:SCR_009115) Copy
http://wbiomed.curtin.edu.au/genepop/
Population genetic data analysis software package. Used to perform exact Hardy Weinberg Equilibrium test. Used for population differentiation and for genotypic disequilibrium among pairs of loci. Computes estimates of F-statistics, null allele frequencies, allele size-based statistics for microsatellites, etc. and performs analyses of isolation by distance from pairwise comparisons of individuals or population samples., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: GENEPOP (RRID:SCR_009194) Copy
An Antibody supplier
Proper citation: AMS Biotechnology (RRID:SCR_008929) Copy
Standards for communications between medical imaging devices, including handling, storing and transmitting information in medical imaging. It includes a file format definition and a network communication protocol.
Proper citation: DICOM standard (RRID:SCR_008925) Copy
http://www.cancerimagingarchive.net/
Archive of medical images of cancer accessible for public download. All images are stored in DICOM file format and organized as Collections, typically patients related by common disease (e.g. lung cancer), image modality (MRI, CT, etc) or research focus. Neuroimaging data sets include clinical outcomes, pathology, and genomics in addition to DICOM images. Submitting Data Proposals are welcomed.
Proper citation: Cancer Imaging Archive (TCIA) (RRID:SCR_008927) Copy
A commercial service organization that for DNA Methylation available for bisulfite treatment of DNA for methylation-specific analysis, histone, chromatin, and small RNA analysis and for the next era of DNA methylation detection and analysis.
Proper citation: Zymo Research (RRID:SCR_008968) Copy
http://www.medinfopoli.polimi.it/GAAS/
An integrated software framework for efficient management, analysis and visualization of large amounts of gene expression data across replicated experiments., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: GAAS (RRID:SCR_008967) Copy
Diabetes research center which provides patient care and performs diabetes research. Its primary aim is to provide a facilitating framework for conducting multi-disciplinary basic and clinical research and to encourage the scientific development of young investigators.
Proper citation: Joslin Diabetes Center (RRID:SCR_009019) Copy
http://www.leica-microsystems.com/home/
An Antibody supplier
Proper citation: Leica Microsystems (RRID:SCR_008960) Copy
http://metagenomics.atc.tcs.com/compression/DELIMINATE/
A practical implementation of a novel compression approach that can rapidly compress FASTA files containing genomic sequence data in a loss-less fashion.
Proper citation: DELIMINATE (RRID:SCR_008956) Copy
http://wpicr.wpic.pitt.edu/WPICCompGen/bars.htm
Software application that is a statistical method that bridges the gap between single-locus and haplotype-based tests of association. It is based on the non-parametric regression techniques embodied by Bayesian Adaptive Regression Splines. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: BARS (RRID:SCR_009123) Copy
http://www.nitrc.org/projects/journals/
Journals addressing functional and structural neuroimaging topics.
Proper citation: Functional and Structural Neuroimaging Journals Listing (RRID:SCR_009482) Copy
http://www.miltenyibiotec.com/en/
An Organization portal, Antibody supplier, Service resource,
Proper citation: Miltenyi Biotec (RRID:SCR_008984) Copy
Proteintech Europe Ltd is an ISO 9001:2008 certified company
Proper citation: Proteintech Group (RRID:SCR_008986) Copy
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