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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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BioNano: Irys system Resource Report Resource Website 10+ mentions |
BioNano: Irys system (RRID:SCR_016754) | instrument resource | System by BioNano Genomics ( formerly BioNanomatrix) which provides optical next generation mapping (NGM). Used for sequence assembly and structural variation analysis. Provides Scaffold Bionano genome mapping data with sequencing data to improve assembly contiguity, reduce sequencing coverage needed, and automatically correct errors in sequencing based assemblies. | instrument, Irys, system, BioNano Genomics, BioNanomatrix, optical, next, generation, mapping, sequence, assembly, structural, variation, analysis, data, | Commercially available | https://bionanogenomics.com/wp-content/uploads/2017/01/2016-Irys-System-Brochure.pdf | https://bionanogenomics.com/technology/genome-assembly/ | SCR_016754 | 2026-08-01 12:05:53 | 35 | |||||||||
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Surface Modified Amperometry CMOS IC Resource Report Resource Website 1+ mentions |
Surface Modified Amperometry CMOS IC (RRID:SCR_017082) | instrument resource | Integrated circuit device used as tool for amperometry measurement as replacement of conventional carbon fiber microelectrode. Surface modified structures with SU 8 microwells increases life span of each individual device and achieves single cell measurement efficiency by trapping cells inside microwells. | instrument, device, CMOS, amperometry, measurement, chip, microelectrode, microwell, cell, semiconductor | PMID:28889250 | SCR_017082 | Surface Modified Amperometry Complementary Metal Oxide Semiconductor IC | 2026-08-01 12:05:46 | 1 | ||||||||||
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Olympus: FluoView FV3000 Confocal Laser Scanning Microscope Resource Report Resource Website 50+ mentions |
Olympus: FluoView FV3000 Confocal Laser Scanning Microscope (RRID:SCR_017015) | instrument resource | FV3000 is a laser scanning confocal microscope system that captures high-resolution, high-contrast images by scanning samples point by point, enabling precise 3D fluorescence imaging. The system supports inverted and upright configurations and accommodates various objectives with magnifications ranging from 1.25× to 100×, including oil, silicone, and dry lenses, which allows imaging of both macro and micro-scale samples. It is equipped with multiple laser lines for excitation, including 405 nm, 488 nm, 561 nm, and 640 nm, as well as additional lines in some configurations (445 nm, 514 nm, 594 nm, 630 nm), enabling the use of several fluorophores simultaneously. On the detection side, the microscope uses high-sensitivity photomultiplier tube detectors, including GaAsP PMTs and multi-alkali PMTs. | instrument, Olympus, confocal, laser, scanning, microscope, Fluoview, FV3000 |
is used by: Texas State University Nanofabrication Research Service Center Core Facility is provided by: Olympus |
Commercially available | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_017015.pdf | https://www.olympus-global.com/technology/design/product/fv3000_series.html | https://www.olympus-lifescience.com/en/laser-scanning/fv3000 | SCR_017015 | , Olympus FV3000 Confocal, Olympus FV3000 microscope, FLUOVIEW FV3000 | 2026-08-01 12:05:59 | 51 | ||||||
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Microfluidic device to attain high spatial and temporal control of oxygen Resource Report Resource Website |
Microfluidic device to attain high spatial and temporal control of oxygen (RRID:SCR_017131) | instrument resource | Device to control spatial and temporal variations in oxygen tensions to better replicate in vivo biology. Consists of three parallel connected tissue chambers and oxygen scavenger channel placed adjacent to these tissue chambers. Provides consistent control of spatial and temporal oxygen gradients in tissue microenvironment and can be used to investigate important oxygen dependent biological processes present in cancer, ischemic heart disease, and wound healing. | device, instrument, control, spatial, temporal, variation, oxygen, tension, tissue, microenvironment | NCATS UH3 TR00048; NCI R01 CA170879; NIDDK UC4 DK104202; NSF DGE-1143954 |
PMID:30571786 | SCR_017131 | 2026-08-01 12:05:53 | 0 | ||||||||||
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Open Ephys: Pulse Pal Resource Report Resource Website 1+ mentions |
Open Ephys: Pulse Pal (RRID:SCR_017203) | instrument resource | Open source pulse train generator that allows users to create and trigger software defined trains of voltage pulses with high temporal precision. Generates precisely timed pulse sequences for use in research involving electrophysiology or psychophysics. | instrument, generator, stimulation, voltage, puls, sequence, electrophysiology, psychophysics | NINDS R01 NS07553; NIMH R01 MH097061; McKnight Foundation |
DOI:10.3389/fneng.2014.00043 | Available for purchase | https://sanworks.io/shop/viewproduct?productID=1102, https://github.com/sanworks/PulsePal, https://sites.google.com/site/pulsepalwiki/specifications?authuser=0 | SCR_017203 | Pulse Pal v2 | 2026-08-01 12:05:47 | 1 | |||||||
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Keyence: BZ X-710 fluorescent microscope Resource Report Resource Website 10+ mentions |
Keyence: BZ X-710 fluorescent microscope (RRID:SCR_017202) | instrument resource | All in one fluorescence microscope BZ-X710 by Keyence, Japan. | instrument, fluorescence, microscope, Keyence | Available for purchase | https://www.keyence.com/products/microscope/fluorescence-microscope/bz-x700/models/bz-x710/ | SCR_017202 | 2026-08-01 12:05:56 | 23 | ||||||||||
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Marshall Scientific: PTC-150 MiniCycler Resource Report Resource Website |
Marshall Scientific: PTC-150 MiniCycler (RRID:SCR_017214) | instrument resource | Mini Thermal Cycler PCR is compact thermal scanner, catalog number PTC-150 Cycler with Hot Bonnet heated lid for oil free cycling by MJ Research. | Instrument, PCR, mini, thermal, cycler, heated, lid, oil, free, MJ Research | Available for purchase | https://www.marshallscientific.com/v//vspfiles/files/manuals/PTC150.pdf | SCR_017214 | 2026-08-01 12:06:06 | 0 | ||||||||||
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Agilent: Femto Pulse System Resource Report Resource Website 1+ mentions |
Agilent: Femto Pulse System (RRID:SCR_018058) | instrument resource | Femto Pulse System separates large molecular weight DNA fragments and detects nucleic acids into femtogram range.Fragment analyzer that provides pulsed field power supply which allows large molecular weight DNA fragments to be separated and nucleic acids detected into femtogram range. Ability to separate high molecular weight DNA up to 165 kb and detect nucleic acids down to 50 fg per uL input concentration makes system ideal for long-read NGS QC, gDNA, small RNA, or cfDNA analysis from low concentration samples. | ABRF, Agilent, Femto Pulse System, Instrument Equipment, USEDit, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018058.pdf | Model_Number_Femto Pulse, SCR_019498 | https://www.agilent.com/cs/library/usermanuals/public/quick-guide-fp-1002-gdna-165-kb-kit-SD-AT000141.pdf | SCR_018058 | AATI FemtoPulse, Advanced Analytical Technologies, Inc. FEMTO Pulse Fragment Analyzer, AATI FEMTO Pulse Fragment Analyzer | 2026-08-01 12:06:17 | 3 | |||||||
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Thermo Fisher: Applied Biosystems: 3730 Genetic Analyzer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Applied Biosystems: 3730 Genetic Analyzer (RRID:SCR_018052) | instrument resource | Medium to high throughput genetic analyzer that performs DNA fragment analysis applications such as microsatellites, AFLP, SNP analysis, mutation detection and traditional DNA sequencing. Upgradeable to 96 capillaries. | ABRF, genetic analyzer, 96 capillary electrophoresis, DNA fragment analysis, microsatellites, AFLP, SNP analysis, mutation detection, DNA sequencing, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018052.pdf | Model_Number_3730 | https://assets.thermofisher.com/TFS-Assets/LSG/manuals/4478016A.pdf | SCR_018052 | 3730 DNA Analyzer | 2026-08-01 12:06:10 | 3 | |||||||
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Eppendorf: 5418 R Centrifuge Resource Report Resource Website |
Eppendorf: 5418 R Centrifuge (RRID:SCR_018050) | instrument resource | Refridgerated centrifuge with 18 place capacity rotor that accomdates low to medium capacity in 1.5 or 2.0 mL tubes and Microtainer. Speed allows for standard molecular biology applications. Compact size and quiet operation. | ABRF, refrigerated centrifuge, Eppendorf, benchtop centrifuge, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018050.pdf | Model_Number_5418_R | https://www.eppendorf.com/product-media/doc/en/173997/Eppendorf_Centrifugation_Operating-manual_Centrifuge-5418-R.pdf | SCR_018050 | Eppendorf 5418 Centrifuge (2) | 2026-08-01 12:05:54 | 0 | |||||||
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BD Biosciences: FACSCanto Flow Cytometer Resource Report Resource Website 10+ mentions |
BD Biosciences: FACSCanto Flow Cytometer (RRID:SCR_018055) | instrument resource | Flow cytometry system that performs reliable performance, accuracy, and ease-of-use for clinical diagnostic services. System has 10 color capability, optical enhancements, and 4-3-3 configuration deliver high sensitivity and resolution for accurate results. | ABRF, Flow Cytometer, flow cytometry, multicolor analysis, BD FACSCanto, instrument, equipment | is listed by: USEDit | Model_Number_Canto | https://www.bdbiosciences.com/content/dam/bdb/marketing-documents/facscanto_techspecs.pdf | SCR_018055 | Canto-blue and red lasers | 2026-08-01 12:05:54 | 17 | ||||||||
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Bruker: 9.4T Biospec Biospec Magnetic Resonance Imaging Resource Report Resource Website 1+ mentions |
Bruker: 9.4T Biospec Biospec Magnetic Resonance Imaging (RRID:SCR_018054) | instrument resource | MRI system that performs preclinical and molecular MR imaging. MRI CryoProbe technology combined with ultra high field USR magnets deliver high spatial resolution in-vivo. Any small animal MR imaging application in life science, biomedical and preclinical research can be conducted. | ABRF, Magnetic Resonance Imaging, small animal imaging, BioSpec, Bruker, preclinical veterinary imaging, molecular MRI, instrument, equipment | is listed by: USEDit | Model_Number_Biospec | SCR_018054 | 9.4T Bruker Biospec MRI | 2026-08-01 12:06:10 | 6 | |||||||||
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BGI: BGISEQ-500 Resource Report Resource Website 10+ mentions |
BGI: BGISEQ-500 (RRID:SCR_017979) | instrument resource | Desktop sequencer developed by BGI. Using DNA nanoball and combinational probe anchor synthesis developed from Complete Genomics sequencing technologies, it generates short reads at large scale. BGI/MGI Sequencer. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment | is used by: BGI: DNBSeq PE150 BGISEQ-500 sequencing system | DOI:10.1093/gigascience/giy144 DOI:10.1101/786962 |
Restricted | https://www.bgi.com/global/company/careers/bgi-launches-its-desktop-sequencer-bgiseq-500/ | SCR_017979 | 2026-08-01 12:05:52 | 25 | ||||||||
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MGI: DNBSEQ-T7 Resource Report Resource Website 10+ mentions |
MGI: DNBSEQ-T7 (RRID:SCR_017981) | instrument resource | Sequencer can generate 1-6Tb of high quality data per day, for wide range of applications including Whole Genome Sequencing, Deep Exome Sequencing, Epigenome Sequencing, Transcriptome Sequencing, and targeted panel projects. Powered by DNBSEQTM Technology, DNBSEQ-T7 makes sequencing more efficient and productive with advances in biochemical, fluidics, and optical systems. Detection and characterization of copy number variants based on whole-genome sequencing by MGI platforms. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment | DOI:10.1101/786962 | Restricted | https://en.mgi-tech.com//Uploads/Temp/file/20230619/648fc032e4af9.pdf | SCR_017981 | 2026-08-01 12:06:09 | 23 | |||||||||
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PacBio: RS II Sequencing System Resource Report Resource Website 1+ mentions |
PacBio: RS II Sequencing System (RRID:SCR_017988) | instrument resource | Sequencer by Pacific Biosciences. System allows scientists to generate finished genome assemblies, reveal and understand epigenomes, and characterize genomic variation. It achieves longest read lengths and highest consensus accuracy. Finishes microbial genomes and improves assembly of larger organisms with multi-kilobase reads and unbiased coverage regardless of GC content. No amplification is required. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment | Restricted | https://www.mscience.com.au/upload/pages/pacbio/pacbio_rs_ii_brochure.pdf | SCR_017988 | RS II System, RS II Sequencing System | 2026-08-01 12:06:16 | 7 | |||||||||
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Oxford: Nanopore Technologies: PromethION Resource Report Resource Website 50+ mentions |
Oxford: Nanopore Technologies: PromethION (RRID:SCR_017987) | instrument resource | System offers real-time, long-read, direct DNA and RNA sequencing by Oxford Nanopore Technologies. System suitable for large scale projects such as population-scale sequencing or plant genomics, or for large scale service offerings. PromethION 24 and PromethION 48 systems offer ability to run 24 and 48 flow cells respectively. System allows on demand sequencing, using any flow cell at any time. Users can start and stop running individual experiments as required, or deploy multiple flow cells onto single experiments for greater speed or throughput. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment |
is related to: NanoporeTech: GridION Mk1 is related to: Oxford: Nanopore Technologies MinION |
Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_017987.pdf | https://community.nanoporetech.com/requirements_documents/promethion-spec.pdf | SCR_017987 | PromethION 24, PromethION 48 | 2026-08-01 12:06:09 | 83 | |||||||
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NanoporeTech: GridION Mk1 Resource Report Resource Website 1+ mentions |
NanoporeTech: GridION Mk1 (RRID:SCR_017986) | instrument resource | Benchtop sequencing and analysis device designed to run and analyse up to five individually addressable MinION or Flongle Flow Cells by Oxford Nanopore Technologies. Good for labs with multiple projects that need advantages of nanopore sequencing: simple library preparation, real-time analysis and new biological insights from long reads. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment |
is related to: Oxford: Nanopore Technologies MinION is related to: Oxford: Nanopore Technologies: PromethION |
Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_017986.pdf | https://community.nanoporetech.com/requirements_documents/gridion-mk1-spec.pdf | SCR_017986 | 2026-08-01 12:06:16 | 6 | ||||||||
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MGI: DNBSEQ-G400 Resource Report Resource Website 10+ mentions |
MGI: DNBSEQ-G400 (RRID:SCR_017980) | Restricted | instrument resource | Sequencer developed by MGI Tech Co. Ltd. Next generation sequencing platform. Its sequencing principle relies on DNB and cPAS technologies also used in previous version of BGISEQ-500 device, but reagents for MGISEQ-2000 are refined and platform utilizes updated software. Built with new chip system that can flexibly support variety of different sequencing models. | sequencing machine, hardware, high-throughput sequencing, instrument, equipment | DOI:10.1101/577080 | https://en.mgi-tech.com//Uploads/Temp/file/20220616/62aacd2432d7b.pdf | SCR_017980 | MGISEQ-2000 | 2026-08-01 12:06:16 | 13 | ||||||||
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Leica: EG1160 Embedding Station Resource Report Resource Website |
Leica: EG1160 Embedding Station (RRID:SCR_018033) | instrument resource | Paraffin embedding station that provides constant, reproducible paraffin flow at ten different flow rate settings. All instrument functions, including automatic starting time, are individually programmable at press of button. Compact dimensions, ease of operation, and high standards of convenience. Separately-heated paraffin dispensing system with integrated filter provides constant, reproducible paraffin flow at ten different flow rate settings. | ABRF, paraffin embedding station, Leica, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018033.pdf | Model_Number_1160 | https://bme.columbia.edu/files/seasdepts/biomedical-engineering/pdf-files/Leica_EG1160_Manual.pdf | SCR_018033 | EG 1160 paraffin embedding station | 2026-08-01 12:05:53 | 0 | |||||||
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Molecular Devices: Molecular Dynamics Storm 860 Molecular Imager Resource Report Resource Website |
Molecular Devices: Molecular Dynamics Storm 860 Molecular Imager (RRID:SCR_018032) | instrument resource | Multifunction phosphoimager fluorimager laser scanner that collects fluorescent or storage phosphor images from gels, membranes and phosphor screens. It is equipped with blue (450 nm) and red (635 nm) lasers, can scan at resolutions down to 50 microns. It is able to quantify radioactive gels for commonly used isotopes such as 32P, 33P, 125I, 35S, and 14C. There are three detection modes: phosphor screen mode, red/blue fluorescence, chemifluorescence. | ABRF, molecular imager, GE HealthCare, gel, blot, analysis, laser scanner, instrument, equipment | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018032.pdf | Model_Number_Storm 860 Imager | https://btiscience.org/wp-content/uploads/2014/04/Storm_User_Manual.pdf | https://www.mbl.edu/jbpc/files/2014/05/Storm_Info.pdf | SCR_018032 | Storm 860 Molecular Imager, Storm Gel and Blot Imaging System | 2026-08-01 12:06:09 | 0 |
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