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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Parkinson's Progression Markers Initiative Resource Report Resource Website 500+ mentions |
Parkinson's Progression Markers Initiative (RRID:SCR_006431) | PPMI | biomaterial supply resource, material resource | An observational longitudinal clinical study partnership to identify and validate biomarkers of Parkinson disease (PD) progression and provide easy and open web-based access to the comprehensive set of correlated clinical data and biospecimens, information, and biosamples acquired from PD and age and gender matched healthy control subjects to the research community. The data and specimens have been collected in a standardized manner under strict protocols and includes clinical (demographic, motor and non-motor, cognitive and neurobehavioral), imaging (raw and processed MRI, SPECT and DAT), and blood chemistry and hematology subject assessments and biospecimen inventories (serum, plasma, whole blood, CSF, DNA, RNA and urine). All data are de-identified to protect patient privacy. PPMI will be carried out over five years at 21 clinical sites in the United States and Europe and requires the participation of 400 Parkinson's patients and 200 control participants. The PPMI database provides researchers with access to correlated clinical and imaging data, along with annotated biospecimens, all available within an open access system that encourages data sharing (http://www.ppmi-info.org/access-data-specimens/). The website hosts an Ongoing Analysis section to keep the scientific community apprised of analyses being completed, in hopes of stimulating collaborations between researchers who are using PPMI data and specimens. | analyze, atlas data, clinical neuroinformatics, computational neuroscience, dicom, imaging genomics, loni pipeline, minc, magnetic resonance, pet, spect, dat, image collection, clinical, biological, imaging data, biomarker, imaging, demographic, motor, cognitive, neurobehavioral, hematology, consortium, biosample, sleep, longitudinal, FASEB list |
is used by: Biomarkers Across Neurodegenerative Diseases is listed by: Consortia-pedia is listed by: One Mind Biospecimen Bank Listing is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: NIH Data Sharing Repositories is related to: NIH Data Sharing Repositories has parent organization: Laboratory of Neuro Imaging has parent organization: Michael J. Fox Foundation for Parkinsons Research |
Parkinson's disease, Control | Michael J. Fox Foundation for Parkinsons Research ; consortium of industry partners ; non-profit organizations ; private individuals |
Open unspecified license, Application required | nlx_33115 | http://www.nitrc.org/projects/ppmi | SCR_006431 | Parkinson's Progression Markers Initiative | 2025-04-02 11:05:17 | 542 | ||||
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UK DNA Banking Network Resource Report Resource Website 1+ mentions |
UK DNA Banking Network (RRID:SCR_010619) | UDBN | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on October 6, 2011. A project to collect, store and study DNA samples from tens of thousands of healthy volunteers and patients with diseases of major public importance. It aims to identify genes that are risk factors for the conditions. The network consists of 13 collections led by different clinicians throughout the UK. At its heart is an archive infrastructure which manages the DNA and the information associated with it. The European Collection of Cell Cultures in Porton Down handles the blood, peripheral blood lymphocytes and EBV-transformed cell lines, while the Centre for Integrated Genomic Medical Research at Manchester University manages the DNA. These banked samples are available to UK and international researchers, who can examine data and set up collaborative work by registering at the DNA Network's website. The conditions for which samples are currently collected and stored are: Acute leukemia, Asthma and eczema, Late onset Alzheimer's disease, Breast cancer, Colorectal cancer, Coronary artery disease, Glomerulonephritis, Hypertension, Age-related macular degeneration, Multiple sclerosis, Parkinson's disease, Type 2 diabetes, Unipolar depression. | alzheimer, gene, dna, peripheral blood lymphocyte, ebv-transformed cell line |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Manchester; Manchester; United Kingdom |
Leukemia, Asthma, Eczema, Alzheimer's disease, Breast cancer, Colorectal cancer, Coronary artery disease, Glomerulonephritis, Hypertension, Age-related macular degeneration, Multiple Sclerosis, Parkinson's disease, Type 2 diabetes, Unipolar depression, Cancer | MRC | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_60877 | SCR_010619 | 2025-04-02 11:08:33 | 3 | ||||||
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Emory ADRC Tissue and Biospecimen Banking Facility Resource Report Resource Website |
Emory ADRC Tissue and Biospecimen Banking Facility (RRID:SCR_000551) | biomaterial supply resource, tissue bank, material resource | The Alzheimer's Disease Research Center at Emery University maintains an active brain bank to facilitate the acquisition, storage, handling and distribution of well-characterized autopsy brain tissue and other materials to investigators. It contains frozen tissue and brain specimens, formalin fixed tissue, paraformaldehyde fixed tissue, and cryopreserved tissue. The ADRC also has access to tissues and samples related to other neurodegenerative diseases. It contains plasma samples, serum samples, lymphoblast cell lines, and cerebrospinal fluid. | brain bank, biomaterial supply resource, brain tissue, plasma, cerebral spinal fluid, serum, lymphoblast cell line, buffy coat isolate, buffy coat, frozen, paraffin block, paraformaldehyde-fixed, cryopreserved, alzheimer's disease, parkinson's disease, neurodegenerative disease, tauopathy, huntington's disease, normal control |
is listed by: One Mind Biospecimen Bank Listing is affiliated with: Emory Alzheimer's Disease Research Center is related to: Emory Neurology Database has parent organization: Emory University School of Medicine; Atlanta; Georgia; USA |
Alzheimer's disease, Parkinson's disease, Neurodegenerative disease, Tauopathy, Huntington's disease, Creutzfeldt-Jakob Syndrome, Dementia, Movement disorder, Sleep disorder, Stroke, Neuromuscular disease, Nervous system disease, Amyotrophic Lateral Sclerosis, Restless Leg Syndrome | NINDS P30 NS055077 | Public, Investigators must notify the ADRC of data use, Investigators must send a final copy of any accepted manuscript that used data or recruited research participations from the ADRC, Grant acknowledgement required, Institution acknowledgement required | nlx_144036 | SCR_000551 | Emory Tissue and Biospecimen Banking Facilities, Emory Tissue & Biospecimen Banking Facility, Emory ADRC Tissue & Biospecimen Banking Facility | 2025-04-03 11:00:10 | 0 | ||||||
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SynSysNet Resource Report Resource Website 1+ mentions |
SynSysNet (RRID:SCR_003180) | SynSysNet | data or information resource, database | A curated database for synaptic proteins that provides adequate definitions of pre- and post-synaptic proteins, proteins present in sub-domains of the synapse, e.g. the synaptic vesicle and associated proteins, lipid rafts and postsynaptic density. In addition to data that was and will be gathered from the experiments conducted within SynSys - A European expertise Network on building the synapse, they have extracted and manually curated all relevant data on these proteins from other sources and provided an ontology for these. Novel splice forms are being identified that can be matched with proteomics data. Information on proteins, their 3D structure, binding small molecules Protein-Protein-Interactions (PPIs) and Compound-Protein-Interactions are integrated. Proteins or compounds can be searched and Interactive Networks can be visualized. The point Diseases present neurological diseases, to illustrate the role of SynSysNet in the medication. | gene, synapse, protein, interaction, compound, disease, structure, model, compound, protein-drug interaction, protein-protein interaction, pathway, drug-target, small molecule, interaction network, homology, drug, drug-target interaction, compound-protein interaction, visualization, proteomics, network |
is listed by: OMICtools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: KEGG has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany |
Huntington's disease, Chorea Huntington, Epilepsy, Multiple Sclerosis, Parkinson's disease, Schizophrenia, Neurological disease | European Union Seventh FPSYNSYS 242167; DFG GRK1772; DFG GRK1360 |
PMID:23143269 | Creative Commons Attribution-NonCommercial-ShareAlike License, v3 Unported | nlx_156893, OMICS_01914 | SCR_003180 | SynSysNet - Synaptic Proteins Database | 2025-04-03 11:02:49 | 3 | ||||
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Integrated Biobank of Luxembourg Resource Report Resource Website 1+ mentions |
Integrated Biobank of Luxembourg (RRID:SCR_004211) | IBBL | biomaterial supply resource, tissue bank, material resource | An independent, not-for-profit biobanking and biotechnology foundation designed to facilitate new, high quality medical research. The IBBL collects, stores, and analyzes biological samples and associated data, which are then made available to research organizations investigating new treatments for diseases. It houses a biospecimen collection and biorepository that contains high quality tissues and maintains quality control of the specimens and the clinical data associated with the tissue samples, while maintaining biobanking ethical standards. It also provides biorefinery analyses and research services that can make analytes from tissues (e.g. DNA, RNA and protein), maintains technology for high throughput gene sequencing and gene expression, and conducts biospecimen research. An informatics platform maintains the clinical and biospecimens data in a secure fashion for additional analysis. Samples are collected by IBBL personnel from hospitals in a targeted manner. The IBBL collaborates with research and health organizations in North America, Europe and the Middle East, and with the major international biobanking societies. | biobank, biorepository, clinical data, tissue, dna, rna, protein, cancer, type 2 diabetes, parkinsons disease, biotechnology | is listed by: One Mind Biospecimen Bank Listing | Cancer, Type 2 diabetes, Parkinson's disease | Public | nlx_23314 | SCR_004211 | 2025-04-03 11:03:14 | 5 | |||||||
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Biobank of Hospital Clinic - IDIBAPS Resource Report Resource Website 1+ mentions |
Biobank of Hospital Clinic - IDIBAPS (RRID:SCR_004530) | biomaterial supply resource, tissue bank, material resource | A biobank of repositories which works to obtain, store, manage and distribute large collections of human biological samples of phenotypes and diseases of marked interest for researchers. The biobank sample collection is made up of three extensive repositories. The Neurological Tissue Biobank is a nervous tissue repository (brain and spinal cord) created from donations from cadavers with or without neurological conditions. It helps facilitate research in neurological illnesses. The Tumour Biobank and Anatomical Pathologies Collections is a repository of tumorous tissue and samples from cancer patients. The Blood and Fluid Biobank is a repository which contains samples of metabolic, inflammatory bowel, hepatic, digestive and maternal and foetal diseases, among others. It houses a large range of samples of scientific interest, primarily DNA, serum and plasma. | biobank, neurological, nervous tissue, tumorous tissue, cancer, blood, serum, plasma, dna, standardized biobanking, biomaterial supply resource | is listed by: One Mind Biospecimen Bank Listing | Neurological disease, Alzheimer's disease, Creutzfeldt-Jakob syndrome, Parkinson's disease, Lewy Body disease, Amyotrophic lateral sclerosis, Huntington's disease, Tumor, Cancer, Metabolic disease, Inflammatory bowel disease, Hepatic disease, Digestive disease, Maternal disease, Fetal disease, Autoimmune Liver disease, Cholestasis, Fragile X syndrome, Genetic mental retardation, Monogenetic dementia, Acute coronary syndrome, Human immunodeficiency virus | Available to the scientific community, Sample requests are reviewed to ensure that the best possible use is made of the samples, Requests are made through an online form, Users will be contacted to go over the terms and conditions for collaboration | nlx_51631 | SCR_004530 | Hospital Clinic Barcelona - IDIBAPS biobank, Biobank of Hospital Clinic Barcelona IDIBAPS | 2025-04-03 11:03:28 | 2 | |||||||
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NeuroBiobank Munich Resource Report Resource Website 10+ mentions |
NeuroBiobank Munich (RRID:SCR_005014) | NBM | biomaterial supply resource, tissue bank, material resource | A brain bank which collects brain tissue from patients who died from various neurological and psychiatric diseases. These tissues are available for biochemical, molecular biological, and other work groups with the aim of supporting research on the pathogenesis, diagnosis, and therapy of these diseases. Collected brains are clinically and neuropathologically well-characterized. The collection and distribution of brain tissue samples is an ongoing process. NeuroBiobank Munich offers help with the organization and implementation of autopsies as well as with the neuropathologic diagnostics. The thematic emphasis of the NeuroBiobank Munich is Parkinson's disease and demential degenerative disorders such as Alzheimer's disease or Creutzfeldt-Jakob disease. NeuroBiobank Munich coordinates the German national brain tissue bank (BrainNet) and the European brain tissue bank (BrainNet Europe). | brain, tissue, brain bank, neurological disease, mental disease, parkinson's disease, alzheimer's disease, creutzfeldt-jakob syndrome, post mortem, neurodegenerative disease, dementia |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Ludwig-Maximilians-University; Munich; Germany |
Parkinson's disease, Alzheimer's disease, Creutzfeldt-Jakob Syndrome, Neurodegenerative disease, Dementia | Public | nlx_144006 | SCR_005014 | ZNP Biobank | 2025-04-03 11:03:52 | 26 | ||||||
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Neurodegenerative Disease Knowledge Portal Resource Report Resource Website 1+ mentions |
Neurodegenerative Disease Knowledge Portal (RRID:SCR_023170) | NDKP | topical portal, disease-related portal, data or information resource, portal | Portal includes human genetic and functional genomic results generated via consortia based science focusing on neurodegenerative diseases such as ALS, Parkinson's disease, and Alzheimer's disease. | human genetic and functional genomic results, genetics, genomics, neurodegenerative diseases, amyotrophic lateral sclerosis, Parkinson's, Alzheimer | ALS, Parkinson's disease, Alzheimer's disease | Free, Freely available | http://alskp.org | SCR_023170 | 2025-04-03 11:16:01 | 5 | ||||||||
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FoxDen Data Exploration Network Resource Report Resource Website 1+ mentions |
FoxDen Data Exploration Network (RRID:SCR_022321) | software resource, data or information resource, portal, topical portal, disease-related portal | Provides software tool to explore, download and apply statistical models on aggregated data collected for Fox Insight online clinical study. Study collects patient reported outcomes and genetic data from people with Parkinson's disease and their loved ones. | Fox DEN tool, statistical model, aggregated data, Fox Insight online clinical study, patient reported outcomes, genetic data, Parkinson's disease | Parkinson's disease | DOI:10.1038/s41597-020-0401-2 | Free, Freely available | SCR_022321 | Fox DEN tool, Michael J Fox Data Exploration Network | 2025-04-03 11:15:45 | 1 | ||||||||
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Michael J. Fox Foundation Funded Grants Resource Report Resource Website |
Michael J. Fox Foundation Funded Grants (RRID:SCR_007152) | data or information resource, database | The Foundation supports research that can lead to the creation of better Parkinson's treatments. Here you can search previously awarded grants by keyword, program name, researcher name, institution/organization name, or year. | grant, funding, parkinson's, database | has parent organization: Michael J. Fox Foundation for Parkinsons Research | Parkinson's disease | nif-0000-00519 | http://michaeljfox.com/research_MJFFfundingPortfolio_searchableAwardedGrants.cfm | SCR_007152 | MJFF Funded Grants, Michael J. Fox Foundation for Parkinson's Research Funded Grants | 2025-04-03 11:05:49 | 0 | |||||||
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Polygenic Pathways Resource Report Resource Website 1+ mentions |
Polygenic Pathways (RRID:SCR_006962) | data or information resource, database | Database of disease genes and risk factors and of host pathogen/interactomes. Lists genes, pathways and environmental risk factors positively associated with diseases and conditions such as Alzheimer's disease, schizophrenia, multiple sclerosis, childhood obesity, anorexia nervosa, HIV-1/AIDS, and helicobacter pylori. Details of polymorphisms as well as negative/positive association data can be found via Useful links. Throughout the site are links to Entrez Gene and Pubmed. | genetic disease, risk factor, host pathogen, interactome, polygenic pathway, bio.tools |
is listed by: bio.tools is listed by: Debian is parent organization of: Polygenic Pathways Jobs is parent organization of: PolygenicBlog |
Alzheimer's disease, Schizophrenia, Bipolar disorder, depression, Parkinson's disease, Huntington's disease, Multiple sclerosis, Cystic fibrosis, Childhood obesity, Chronic fatigue syndrome, Autism, Anorexia nervosa, Attention deficit hyperactivity disorder, HIV-1/AIDS | Google ; Amazon |
Free, Freely available | nif-0000-00514, biotools:polygenicpathways, SCR_015716 | https://bio.tools/polygenicpathways | SCR_006962 | PolygenicPathways, Polygenic Signaling Pathways | 2025-04-03 11:05:42 | 4 | |||||
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PrecisionMed Resource Report Resource Website 10+ mentions |
PrecisionMed (RRID:SCR_010486) | biomaterial supply resource, tissue bank, material resource | A biorepository of human biological material from healthy and diseased populations with a special focus on subjects with Alzheimer's disease, multiple sclerosis, Parkinson's disease and other neurological disorders. Data is collected longitudinally. PrecisionMed aims to facilitate research in genetics, drug discovery, biomarker research and molecular diagnostics. Materials collected include DNA, RNA, plasma and cerebrospinal fluid, among others. | csf, dna, rna, serum, plasma, alzheimer's disease, ad, mild cognitive impairment, mci, multiple sclerosis, ms, parkinson's disease, schizophrenia, pd, sz, cerebrospinal fluid, diseased, urine, csf cell pellets, paxgene, ffpe, research, biobank, biorepository, collection, human sample, healthy, diseased | is listed by: One Mind Biospecimen Bank Listing | Alzheimer's disease, Mild cognitive impairment, Multiple Sclerosis, Parkinson's disease, Schizophrenia | Available to the research community | nlx_29853 | SCR_010486 | Precision Med Inc., PrecisionMed: Human Biological Material | 2025-04-03 11:08:41 | 20 | |||||||
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The NINDS Human Cell and Data Repository (NHCDR) Resource Report Resource Website 10+ mentions |
The NINDS Human Cell and Data Repository (NHCDR) (RRID:SCR_016319) | NHCDR | biomaterial supply resource, tissue bank, material resource | Cell sources currently include fibroblasts and/or induced pluripotent stem cells for Alzheimer's Disease, Amyotrophic Lateral Sclerosis (ALS), Ataxia-telangiectasia, Frontotemporal Lobar Degeneration (FTD), Huntington's Disease, Parkinson's Disease, and healthy controls. Cell sources, including isogenic cell lines for current and new diseases covered by the NINDS will be added over the next several years. | Stem, cell, fibroblast, plutipotent, isogenic |
is used by: NIH Heal Project is recommended by: National Library of Medicine is listed by: re3data.org works with: Cellosaurus |
Alzheimer's Disease, Amyotrophic Lateral Sclerosis (ALS), Ataxia-telangiectasia, Frontotemporal Lobar Degeneration (FTD), Huntington's Disease, Parkinson's Disease | NLM ; NINDS |
Restricted | https://nindsgenetics.org/ | SCR_016319 | NINDS Human Cell and Data Repository (NHCDR) | 2025-04-03 11:12:50 | 12 | |||||
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MEGASNPHUNTER Resource Report Resource Website 1+ mentions |
MEGASNPHUNTER (RRID:SCR_009287) | MEGASNPHUNTER | software resource, software application | Software application that takes case-control genotype data as input and produces a ranked list of multi-SNP interactions. In particular, the whole genome is first partitioned into multiple short subgenomes and a boosting tree classifier is built for each subgenomes based on multi-SNP interactions and then used to measure the importance of SNPs. The method keeps relatively more important SNPs from all subgenomes and let them compete with each other in the same way at the next level. The competition terminates when the number of selected SNPs is less than the size of a subgenome. (entry from Genetic Analysis Software) | gene, genetic, genomic, parkinson, software application | is listed by: Genetic Analysis Software | Parkinson's disease, Rheumatoid arthritis | nlx_154472 | SCR_009287 | 2025-04-03 11:08:10 | 3 |
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