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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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National Drug Data File Resource Report Resource Website |
National Drug Data File (RRID:SCR_010371) | NDDF | controlled vocabulary, data or information resource, ontology | Ontology of the National Drug Data File plus source vocabulary | umls | is listed by: BioPortal | nlx_157499 | SCR_010371 | 2026-09-12 12:57:18 | 0 | |||||||||
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Neglected Tropical Disease Ontology Resource Report Resource Website |
Neglected Tropical Disease Ontology (RRID:SCR_010374) | NTDO | controlled vocabulary, data or information resource, ontology | Ontology that aims at representing classes and relations to a specific set of diseases which persist in exactly the physical, psychosocial and economic situation of the poorest, most marginalized populations of the developing world, the Neglected Tropical Diseases (NTD). The current focus of NTDO is related to the transmission of vector-borne diseases and how they are related to the death. NTDO is based on BioTop (main classes and relations) and GFO (Time Representation) and represented in Description Logics (DL). NTDO includes information about the proper disease, its causative agent (when available), dispositions, and the geographic location the disease happens. In addition, NTDO includes a generic attempt to identify the process which leads a person to death, due to NTDs or other diseases. NTDO was built with a rich set of axioms and the intended usage is related to Health Surveillance of NTD-related morbidity and mortality cases. | owl | is listed by: BioPortal | Tropical disease, Vector-borne disease | nlx_157502 | http://www.cin.ufpe.br/~ntdo | SCR_010374 | 2026-09-12 12:57:18 | 0 | |||||||
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Neomark Oral Cancer Ontology version 3 Resource Report Resource Website |
Neomark Oral Cancer Ontology version 3 (RRID:SCR_010375) | NEOMARK3 | controlled vocabulary, data or information resource, ontology | Ontology that describes the medical information necessary for early detection of the oral cancer reoccurrence extracted from the NeoMark Project. | owl | is listed by: BioPortal | Oral cancer | nlx_157503 | SCR_010375 | 2026-09-12 12:57:18 | 0 | ||||||||
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Neomark Oral Cancer Ontology version 4 Resource Report Resource Website |
Neomark Oral Cancer Ontology version 4 (RRID:SCR_010376) | NEOMARK4 | controlled vocabulary, data or information resource, ontology | Ontology that describes the medical information necessary for early detection of the oral cancer reoccurrence extracted from the NeoMark Project. | owl | is listed by: BioPortal | Oral cancer | nlx_157504 | SCR_010376 | 2026-09-12 12:57:18 | 0 | ||||||||
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Neural Motor Recovery Ontology Resource Report Resource Website |
Neural Motor Recovery Ontology (RRID:SCR_010377) | NEUMORE | controlled vocabulary, data or information resource, ontology | Ontology of neural functional motor recovery. | owl | is listed by: BioPortal | nlx_157505 | SCR_010377 | 2026-09-12 12:57:18 | 0 | |||||||||
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NeuroMorpho.Org species ontology Resource Report Resource Website |
NeuroMorpho.Org species ontology (RRID:SCR_010378) | NMOSP | controlled vocabulary, data or information resource, ontology | Species ontology that adopts and integrates relevant portions of available taxonomies as needed based on the species and strain terms represented in the current release of NeuroMorpho.Org (72 terms as of the 5.7 release) and any future additions. When a NeuroMorpho.Org term is mapped with an external resource, its entire lineage (ancestors and descendants) is added to the NeuroMorpho.Org species ontology. The resulting 1,340 terms of this initial version of the ontology come for 65% from the NCBI taxonomy (24 NeuroMorpho.Org species/strain terms mapped), 30% from the Rat Gene Database (1 term mapped), and altogether 5% from NIFSTD (7 terms mapped), MeSH (2 terms mapped), ITIS (1 term mapped), and custom-added concepts (41 terms mapped, largely mouse strains from Jackson Labs). | obo |
is listed by: BioPortal has parent organization: NeuroMorpho.Org |
nlx_157508 | SCR_010378 | 2026-09-12 12:57:18 | 0 | |||||||||
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Protein Modification Ontology Resource Report Resource Website |
Protein Modification Ontology (RRID:SCR_010412) | PSIMOD | controlled vocabulary, data or information resource, ontology | Ontology consisting of terms that describe protein chemical modifications, logically linked by an is_a relationship in such a way as to form a direct acyclic graph (DAG). The PSI-MOD ontology has more than 45 top-level nodes, and provides alternative hierarchical paths for classifying protein modifications either by the molecular structure of the modification, or by the amino acid residue that is modified. | obo | is listed by: BioPortal | nlx_157560 | SCR_010412 | PSI-MOD | 2026-09-12 12:57:18 | 0 | ||||||||
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QUDT Resource Report Resource Website 1+ mentions |
QUDT (RRID:SCR_010416) | QUDT | controlled vocabulary, data or information resource, ontology | Collection of ontologies that define the base classes properties, and restrictions used for modeling physical quantities, units of measure, and their dimensions in various measurement systems. The goal of the QUDT ontology is to provide a unified model of, measurable quantities, units for measuring different kinds of quantities, the numerical values of quantities in different units of measure and the data structures and data types used to store and manipulate these objects in software. This OWL schema is a foundation for a basic treatment of units. | owl | is listed by: BioPortal | nlx_157564 | SCR_010416 | Quantities Units Dimensions and Types Ontology, QUDT - Quantities Units Dimensions and Data Types Ontologies | 2026-09-12 12:57:19 | 2 | ||||||||
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Ontology for MicroRNA Target Prediction Resource Report Resource Website |
Ontology for MicroRNA Target Prediction (RRID:SCR_010387) | OMIT | controlled vocabulary, data or information resource, ontology | Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans'' various diseases and biological processes (usually through miRs'' respective target genes). OMIT has reused and extended a set of well-established concepts from existing bio-ontologies, e.g., Gene Ontology, Sequence Ontology, Protein Ontology, NCBI Organism Taxonomy, Human Disease Ontology, Foundational Model of Anatomy, and so forth. | obo | is listed by: BioPortal | nlx_157519 | SCR_010387 | 2026-09-12 12:57:18 | 0 | |||||||||
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Role Ontology Resource Report Resource Website |
Role Ontology (RRID:SCR_010420) | ROLEO | controlled vocabulary, data or information resource, ontology | Ontology in the domain of role classification that aims to standardize role classification and support computer-assisted reasoning. RoleO is a community-based ontology, and its development follows the OBO Foundry principles. | owl | is listed by: BioPortal | nlx_157578 | SCR_010420 | 2026-09-12 12:57:19 | 0 | |||||||||
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Infectious Disease Ontology Resource Report Resource Website |
Infectious Disease Ontology (RRID:SCR_010345) | IDO | controlled vocabulary, data or information resource, ontology | Ontologies designed as a set of interoperable ontologies that will together provide coverage of the infectious disease domain. At the core of the set is a general Infectious Disease Ontology (IDO-Core) of entities relevant to both biomedical and clinical aspects of most infectious diseases. Sub-domain specific extensions of IDO-Core complete the set providing ontology coverage of entities relevant to specific pathogens or diseases. Please note: The ontology metrics displayed by BioPortal do not distinguish IDO-developed terms from terms imported from other ontologies. | owl | is listed by: BioPortal | Infectious disease | nlx_157439 | SCR_010345 | 2026-09-12 12:57:17 | 0 | ||||||||
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International Classification of External Causes of Injuries Resource Report Resource Website 1+ mentions |
International Classification of External Causes of Injuries (RRID:SCR_010348) | ICECI | controlled vocabulary, data or information resource, ontology | A system of classifications to enable systematic description of how injuries occur. It is designed especially to assist injury prevention. It was originally designed for use in settings in which information is recorded in a way that allows statistical reporting--for example, injury surveillance based on collection of information about cases attending a sample of hospital emergency departments. It has also been found useful for other purposes. For example, it has been used as a reference classification during revision of another classification, to record risk-factor exposure of children in a cohort study, as the basis for special-purpose classifications and in a growing number of other ways. | owl | is listed by: BioPortal | nlx_157447 | SCR_010348 | 2026-09-12 12:57:17 | 1 | |||||||||
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International Classification of Diseases Version 10 - Clinical Modification Resource Report Resource Website |
International Classification of Diseases Version 10 - Clinical Modification (RRID:SCR_010350) | ICD10CM | controlled vocabulary, data or information resource, ontology | Ontology of the International Classification of Diseases, 10th Edition, Clinical Modification, 2011_01 | umls | is listed by: BioPortal | nlx_157449 | SCR_010350 | 2026-09-12 12:57:17 | 0 | |||||||||
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Maize Gross Anatomy Ontology Resource Report Resource Website |
Maize Gross Anatomy Ontology (RRID:SCR_010353) | ZEA | controlled vocabulary, data or information resource, ontology | THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 23, 2014. Description not available. | obo | is listed by: BioPortal | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157462 | http://www.maizemap.org/ | SCR_010353 | 2026-09-12 12:57:18 | 0 | |||||||
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Major Histocompatibility Complex Ontology Resource Report Resource Website |
Major Histocompatibility Complex Ontology (RRID:SCR_010354) | MHC | controlled vocabulary, data or information resource, ontology | Ontology that contains terms necessary for describing and categorizing concepts related to Major Histocompatibility Complex, in general, for a number of model species, and also for humans. | owl | is listed by: BioPortal | nlx_157463 | SCR_010354 | MaHCO, MaHCO - An MHC Ontology | 2026-09-12 12:57:18 | 0 | ||||||||
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Microbial Culture Collection Vocabulary Resource Report Resource Website |
Microbial Culture Collection Vocabulary (RRID:SCR_010361) | MCCV | controlled vocabulary, data or information resource, ontology | Structured controlled vocabulary for describing meta information of microbial calture collection maintained in biological research centers | owl | is listed by: BioPortal | nlx_157478 | SCR_010361 | 2026-09-12 12:57:18 | 0 | |||||||||
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Minimal Information about any Sequence Ontology Resource Report Resource Website |
Minimal Information about any Sequence Ontology (RRID:SCR_010364) | MIXS | controlled vocabulary, data or information resource, ontology | Ontology providing an RDF representation of the MIxS (Minimal Information about any Sequence) family of checklists. | owl | is listed by: BioPortal | nlx_157482 | SCR_010364 | 2026-09-12 12:57:18 | 0 | |||||||||
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NIF Dysfunction Ontlogy Resource Report Resource Website |
NIF Dysfunction Ontlogy (RRID:SCR_010365) | NIFDYS | controlled vocabulary, data or information resource, ontology | Ontology that contains the former BIRNLex-Disease, version 1.3.2. -- The BIRN Project lexicon provided entities for data and database annotation for the BIRN project, covering anatomy, disease, data collection, project management and experimental design. It was built using the organizational framework provided by the foundational Basic Formal Ontology (BFO). It used an abstract biomedical layer on top of that - OBO-UBO which was constructed as a proposal to the OBO Foundry. This was meant to support creating a sharable view of core biomedical objects such as biomaterial_entity, and organismal_entity that all biomedical ontologies are likely to need and want to use with the same intended meaning. The BIRNLex biomaterial entities have already been factored to separately maintained ontology - BIRNLexBiomaterialEntity.owl which this BIRNLex-Main.owl file imports. The Ontology of Biomedical Investigation (OBI) is also imported and forms the foundation for the formal description of all experiment-related artifacts. The BIRNLex will serve as the basis for construction of a formal ontology for the multiscale investigation of neurological disease. | owl |
is listed by: BioPortal has parent organization: Neuroscience Information Framework |
nlx_157493 | SCR_010365 | Neuroscience Information Framework (NIF) Dysfunction Ontlogy, Neuroscience Information Framework Dysfunction Ontlogy | 2026-09-12 12:57:18 | 0 | ||||||||
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UBERON Resource Report Resource Website 50+ mentions |
UBERON (RRID:SCR_010668) | UBERON | controlled vocabulary, data or information resource, ontology | An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. Uberon consists of over 10000 classes (March 2014) representing structures that are shared across a variety of metazoans. The majority of these classes are chordate specific, and there is large bias towards model organisms and human. | anatomy, comparative, evolution, organ system, anatomical structure, body part, organ, tissue, body, vertebrate, function, phenotype, expression, model organism, obo |
is used by: Neuroscience Information Framework is listed by: BioPortal is related to: Gene Ontology has parent organization: OBO |
ARRA ; NSF ; NHGRI 5R01HG004838; NHGRI P41HG002273; DOE DE-AC02-05CH11231; NCRR 1U24RR029825-01; NHGRI P41HG002273-09S1 |
PMID:22293552 | nlx_74404 | SCR_010668 | Uber anatomy ontology, Uber-anatomy ontology | 2026-09-12 12:57:21 | 62 | ||||||
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OMIM Resource Report Resource Website 5000+ mentions |
OMIM (RRID:SCR_006437) | OMIM, MIM | catalog, data or information resource, database | Online catalog of human genes and genetic disorders, for clinical features, phenotypes and genes. Collection of human genes and genetic phenotypes, focusing on relationship between phenotype and genotype. Referenced overviews in OMIM contain information on all known mendelian disorders and variety of related genes. It is updated daily, and entries contain copious links to other genetics resources. | gene, genetics, phenotype, genotype, genetic loci, mutation, clinical, trait, disorder, umls, ontology, gold standard, FASEB list |
is used by: Human Phenotype Ontology is used by: NIF Data Federation is used by: MitoMiner is used by: Schizo-Pi is used by: GEMINI is used by: MARRVEL is used by: HmtPhenome is listed by: BioPortal is listed by: OMICtools is related to: HomoloGene is related to: TopoSNP is related to: phenomeNET is related to: Integrated Gene-Disease Interaction is related to: OMIA - Online Mendelian Inheritance in Animals is related to: Europhenome Mouse Phenotyping Resource is related to: Homophila is related to: Biomine is related to: MalaCards is related to: PhenoTips is related to: KOBAS is related to: Integrated Manually Extracted Annotation is related to: aGEM is related to: biomaRt has parent organization: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA has parent organization: NCBI works with: Human Mouse Disease Connection works with: Database of genes related to Repeat Expansion Diseases |
Genetic disorder, Mendelian disorder, Developmental disorder | PMID:22477700 PMID:22470145 PMID:21472891 PMID:19728286 PMID:18842627 PMID:18428346 PMID:17642958 PMID:17357067 PMID:15608251 PMID:15360913 PMID:11752252 PMID:10845565 PMID:10612823 PMID:9805561 PMID:7937048 PMID:1867277 |
Restricted | nif-0000-03216, r3d100010416, OMICS_00278 | http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim, http://www.ncbi.nlm.nih.gov/Omim/, http://purl.bioontology.org/ontology/OMIM, https://doi.org/10.17616/R3188W | SCR_006437 | Online Mendelian Inheritance in Man, OMIM - Online Mendelian Inheritance in Man, MIM, The Online Mendelian Inheritance in Man Morbid Map | 2026-09-12 12:56:39 | 7365 |
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