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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://edspace.american.edu/openbehavior/project/robotic-flower-system-bee-behavior/
Portal provides system of robotic artificial flowers to study bumble bee behavior. System is designed to capture data when animal is feeding by placement of IR beams that are broken when engaged on flowers feeding mechanism and sends data to control unit.Developed by University of Oulu in Finland scientists. System includes control unit, separate artificial flowers, and personal computer. Control unit is to handle electronics of flowers, collect data from them, and to send data to computer. Flowers contain infrared sensor, their associated electronics, and electromechanical device that offers small, precise amount of sugar solution from reservoir. Computer runs software that controls refilling rate and data collection via the control unit. Circuit diagrams, parts list, and control software and source code are available in paper supplemental information.
Proper citation: Robotic Flower System for Bee Behavior project (RRID:SCR_021584) Copy
https://edspace.american.edu/openbehavior/project/attys/
Portal related to biomedical signals.Provides wearable data acquisition device with special focus on biomedical signals such as heart activity (ECG), muscle activity (EMG) and brain activity (EEG).Open source high precision bluetooth data acquisition device.
Proper citation: Attys project (RRID:SCR_021461) Copy
https://edspace.american.edu/openbehavior/project/autonomouse/
Project related to self initiated conditioning and behavior tracking in mice. Provides automated system that can track large numbers (over 25) of socially housed mice through implanted RFID chips on mice. With RFID trackers and other analyses, behavior of mice can be tracked as they train and are subsequently tested on (or self-initiate testing in) odor discrimination task over months with thousands of trials performed every day.
Proper citation: AutonoMouse project (RRID:SCR_021462) Copy
https://edspace.american.edu/openbehavior/project/training-mesoscale-imaging/
Project to build and use new generation of home cages with emphasis on training for simple headfixed tasks during simultaneous autonomous acquisition of mesoscale brain imaging data. Homecage platform for automated task training and mesoscale brain imaging for mice developed by University of British Columbia scientists.
Proper citation: Homecage Task Training and Mesoscale Imaging project (RRID:SCR_021580) Copy
https://edspace.american.edu/openbehavior/project/autoreward2/
Project related to detection and rewarding rodents in modified T-maze task. System designed to detect and reward rodents in modified T maze provided by Ruhr University Bochum, Germany scientists.
Proper citation: Autoreward2 project (RRID:SCR_021460) Copy
https://edspace.american.edu/openbehavior/project/openmv/
Portal provides system capable of frame differencing, color tracking, marker tracking, face detection, eye tracking, person detection (with TensorFlow Lite), and more. Supports very easy to use GUI, the OpenMV IDE.
Proper citation: OpenMV project (RRID:SCR_021579) Copy
https://edspace.american.edu/openbehavior/project/bpm-biosignals/
Portal as educational resource regarding construction and implementation of bioamplifiers as well as interpretation of biosignals.
Proper citation: BPM Biosignals project (RRID:SCR_021459) Copy
https://edspace.american.edu/openbehavior/project/tetroplater/
Portal provides open source circuit for microwire tetrode gold plating. Circuit includes impedance meter and current generator for tetrode gold plating. Developed by University of Toyama scientist.
Proper citation: Tetroplater (RRID:SCR_021578) Copy
https://edspace.american.edu/openbehavior/project/openspritzer/
Portal provides open hardware used in labs for administering picoliters of liquid to biological samples. Pressure ejection system developed by University of Sussex scientist for reliably delivering picolitre volumes.
Proper citation: OpenSpritzer (RRID:SCR_021575) Copy
https://edspace.american.edu/openbehavior/project/pulse-pal/
Portal provides open source, low cost, programmable pulse train generator for physiology and behavior. Device allows users to create and trigger software defined trains of voltage pulses with high temporal precision. Arduino powered device that generates precise sequences of voltage pulses for neural stimulation and stimulus control. Controlled either through its APIs in MATLAB, Python and C plus plus, or as stand-alone instrument using its oLED screen and clickable thumb joystick.
Proper citation: Pulse Pal project (RRID:SCR_021576) Copy
https://www.nature.com/articles/srep16171#Sec20
Open source program for semi automated analysis of movement and cognitive testing in rodents. Accurately quantifies numerous parameters of movement including travel distance, speed, turning, stationary fraction and laterality. Part of MouseMove system.
Proper citation: MouseMove (RRID:SCR_021618) Copy
https://edspace.american.edu/openbehavior/project/closed-loop-system/
Portal includes system for combined behavioral tracking, electrophysiology, and closed loop stimulation provided by University of Oslo scientists.Integrates Bonsai and Open Ephys with multiple modules.Provides guide for setting up this system.
Proper citation: Closed Loop System project (RRID:SCR_021475) Copy
https://edspace.american.edu/openbehavior/project/trio-platform/
Portal provides low profile in vivo imaging support and restraint system for mice. System is compact and provides sturdy head fixation, gas anesthesia mask, and warm water bed. Compact design allows to work with variety of microscope stages and use of 3D printed components makes this design customizable.
Proper citation: TRIO Platform (RRID:SCR_021596) Copy
https://edspace.american.edu/openbehavior/project/ipad-visual-discrim/
Portal provides touchscreen platform developed by Texas Christian University scientists. iPad apparatus set up consists of four wall operant chamber, remote desktop program, Visual Basic 6 software, and single wireless iPad. Wireless iPad allows for flexibility in setups during performing visual discrimination behavioral experiments.
Proper citation: Visual Discrimination with an iPad (RRID:SCR_021593) Copy
https://edspace.american.edu/openbehavior/project/usv-detector/
Project related to ultrasonic vocalizations detection. Provides device designed for automatic detection of 50kHz ultrasonic vocalizations.
Proper citation: Ultrasonic Vocalizations Detector project (RRID:SCR_021471) Copy
https://ethowatcher.paginas.ufsc.br/
Software tool for behavioral and video tracking analysis in laboratory animals. Used to support detailed ethography, video tracking, and extraction of kinematic variables from digital video files of laboratory animals.
Proper citation: EthoWatcher (RRID:SCR_021504) Copy
Project related to function of cerebral cortex. Included model system for studying cortical function is provided by UC Berkeley scientists. System includes lickometer which employs infrared beam and sensor to minimize electrical noise artifacts during neurophysiology experiments and can be easily mounted in micromanipulator for precise and repeatable positioning.Open source lickometer was designed in conjunction with open source water delivery system.Together, these provide basic hardware for DIY behavioral assay and reward system for mice.
Proper citation: Feldman Lab Lickometer project (RRID:SCR_021469) Copy
https://github.com/arnefmeyer/mousecam
Software Python package with functions for extracting and analyzing data recorded using camera system.Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity.
Proper citation: Mousecam (RRID:SCR_021503) Copy
https://edspace.american.edu/openbehavior/project/hao-chen-lab-repository/
Project aims to establish computing platform for rodent behavior research using Raspberry Pi computer. They have built several devices for conducting operant conditioning and monitoring environmental data.
Proper citation: Hao Chen Lab Repository project (RRID:SCR_021467) Copy
https://edspace.american.edu/openbehavior/project/chendoscope/
Portal provides open source Compact Head Mounted Endoscope for imaging in freely behaving mouse. Includes accessible and flexible set of calcium imaging tools for neuroscience research community.
Proper citation: CHEndoscope (RRID:SCR_021587) Copy
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