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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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simple-t1-motion-detection Resource Report Resource Website |
simple-t1-motion-detection (RRID:SCR_016022) | data processing software, image analysis software, software application, software resource | Software to measure the amount of ghosting artifacts in T1-weighted DICOM images. This program reads DICOM images and calculates a measure of the noise structure in one part of the image. | measure, read, image, calculate, noise, structure, part, digital, medicine, information, abcd |
is related to: University of California at San Diego; California; USA works with: ABCD Study |
NIDA U24 DA041123 | Free, Available for download | SCR_016022 | 2026-09-12 01:01:04 | 0 | |||||||||
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delay-discounting Resource Report Resource Website |
delay-discounting (RRID:SCR_016031) | software application, software resource | Software that performs a delay-discounting task measuring impulsivity. Used in ABCD study. | abcd, delay, discounting, task, measure, impulsivity, software, application, tool | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016031 | 2026-09-12 01:02:53 | 0 | |||||||||
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The Experiment Factory Resource Report Resource Website 1+ mentions |
The Experiment Factory (RRID:SCR_016107) | software application, software resource | Software that generates container-based behavioral experiments for reproducible science. It offers a library of experiments, games, and surveys, support for multiple kinds of databases, and robust documentation for the provided tools. | docker, psychology, behavior, experiment, container, reproducibility, reproducibility, database, library, documentation | National Science Foundation ; NIDA F32DA041773; NIDA UH2 DA041713; William R. Hewlett Stanford Graduate Fellowship |
PMID:27199843 | Free, Available for download | SCR_016107 | EXPFACTORY | 2026-09-12 01:02:53 | 1 | ||||||||
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Clair library Resource Report Resource Website |
Clair library (RRID:SCR_007019) | Clairlib | data analysis software, data processing software, software application, software resource, software toolkit, text extraction software, text-mining software | A suite of open-source Perl modules intended to simplify a number of generic tasks in natural language processing (NLP), information retrieval (IR), and network analysis (NA). Its architecture also allows for external software to be plugged in with very little effort. The latest version of clairlib is 1.06 which was released on March 2009 and includes about 130 modules implementing a wide range of functionalities. Clairlib is distributed in two forms: * Clairlib-core, which has essential functionality and minimal dependence on external software, and * Clairlib-ext, which has extended functionality that may be of interest to a smaller audience. Much can be done using Clairlib on its own. Some of the things that Clairlib can do are: Tokenization, Summarization, Document Clustering, Document Indexing, Web Graph Analysis, Network Generation, Power Law Distribution Analysis, Network Analysis, RandomWalks on Graphs, Tf-IDF, Perceptron Learning and Classification, and Phrase Based Retrieval and Fuzzy OR Queries. | analysis, information, linguistic, module, network, process, retrieval, perl, natural language processing, information retrieval, network analysis |
is listed by: Biositemaps has parent organization: University of Michigan; Ann Arbor; USA |
NSF IIS 0534323; NSF IIS 0329043; NSF BCS 0527513; NLM R01 LM008106; NIDA U54 DA021519 |
Open unspecified license: Content is available under GNU Free Documentation License 1.3 or later. | nif-0000-33210 | SCR_007019 | Computational Linguistics And Information Retrieval Library | 2026-09-12 01:00:12 | 0 | ||||||
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pearson-central-end-point Resource Report Resource Website |
pearson-central-end-point (RRID:SCR_016034) | data acquisition software, data processing software, data storage software, software application, software resource | Data collection software as an end-point for centrally storing data from the Pearsons Q-Interactive. | data, collection, end-point, central, storage, Pearson Q-Interactive, electronic, abcd | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016034 | 2026-09-12 01:00:18 | 0 | |||||||||
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redcap-hook-framework Resource Report Resource Website |
redcap-hook-framework (RRID:SCR_016028) | data management software, software application, software resource | Software tool to organize and deploy custom hooks in a single project or across the entire instance. It features multi-language support for data entry and survey pages, a bar-code for text fields, and highlighting of rows on data entry and survey pages that have been filled out. | data, organize, deploy, custom, hooks, project, abcd, adolescence | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016028 | 2026-09-12 01:00:18 | 0 | |||||||||
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scite Resource Report Resource Website 10+ mentions |
scite (RRID:SCR_018568) | data or information resource, service resource, software application, software resource, text extraction software | Web tool to classify citation statements from scientific articles using deep learning. Used for discovering and evaluating scientific articles via Smart Citations. | Classify citation statement, context, text extraction, deep learning, citation context, cited claim evidence, ASWG | NIDA R44 DA050155; NSF |
Restricted | SCR_018568 | 2026-09-12 01:00:21 | 10 | ||||||||||
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Minian Resource Report Resource Website 1+ mentions |
Minian (RRID:SCR_022601) | data analysis software, data processing software, software application, software resource, software toolkit | Software miniscope analysis pipeline that requires low memory and computational demand so it can be run without specialized hardware. Offers interactive visualization that allows users to see how parameters in each step of pipeline affect output. | Miniscope, analysis pipeline, calcium imaging, mouse, Visualization, OpenBehavior |
is listed by: OpenBehavior has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NIA F32AG067640; NIBIB R01EB028166; NIDA R21 DA049568; NIMH DP2MH122399; NIMH R01MH120162; NINDS R01 NS116357; NINDS R03 NS111493; NINDS U01NS094286; NSF 1700408; NSF 1926800; NSF 2046583 |
PMID:35642786 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/minian/ | SCR_022601 | 2026-09-12 01:00:27 | 6 | |||||||
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Michigan Imputation Server Resource Report Resource Website 1+ mentions |
Michigan Imputation Server (RRID:SCR_023554) | data access protocol, software resource, web service | Web based service for imputation that facilitates access to new reference panels and improves user experience and productivity. Server implements whole genotype imputation workflow using MapReduce programming model for efficient parallelization of computationally intensive tasks. Genotype imputation service using Minimac4. | Genotype imputation, whole genotype imputation workflow, parallelization of computationally intensive tasks, | is related to: MINIMAC | Austrian Science Fund ; European Community Seventh Framework Programme ; NHGRI HG000376; NHGRI HG007022; NHLBI HL117626; NIA ; NIDA R01DA037904 |
PMID:27571263 | Free, Freely available | https://github.com/genepi/imputationserver | SCR_023554 | 2026-09-12 01:00:40 | 9 | |||||||
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LRPath Resource Report Resource Website 1+ mentions |
LRPath (RRID:SCR_018572) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web tool to perform gene set enrichment testing. Used to test for predefined biologically relevant gene sets that contain more significant genes from experimental dataset than expected by chance. Logistic regression approach for identifying enriched biological groups in gene expression data. | Gene, map, gene set, gene set testing, identifying enriched biologically group, gene expression data, gene expression, data, bio.tools |
is listed by: bio.tools is listed by: Debian |
NHGRI R01 HG003749; NIDA U54 DA021519; NIEHS P30 ES06096; NIEHS U01 ES015675; NLM R01 LM008106 |
PMID:19038984 | Free, Freely available | biotools:lrpath | https://bio.tools/lrpath | SCR_018572 | 2026-09-12 12:59:02 | 4 | ||||||
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CRISPR-ERA Resource Report Resource Website 10+ mentions |
CRISPR-ERA (RRID:SCR_018710) | data access protocol, service resource, software resource, web service | Software comprehensive design tool for CRISPR mediated gene editing, repression and activation. Fast and comprehensive guide RNA design tool for genome editing, repression and activation. Used for automated genome wide sgRNA design. | Design tool, CRISPR mediated gene editing, gene repression, gene activation, guide RNA design, genome, automated genome, sgRNA design, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Stanford University; Stanford; California |
FANEDD ; NIDA R01 DA036858; NIDCR ; NIH Office of The Director ; NIH Office of the Director OD017887; NSFC |
PMID:26209430 | Free, Freely available | biotools:CRISPR-ERA | https://bio.tools/CRISPR-ERA | SCR_018710 | CRISP-Editing, Repression and Activation | 2026-09-12 12:59:05 | 13 | |||||
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NIDA center for genetic studies of drug abuse in outbred rats Resource Report Resource Website 1+ mentions |
NIDA center for genetic studies of drug abuse in outbred rats (RRID:SCR_021788) | data or information resource, disease-related portal, portal, topical portal | Portal includes information about genetic studies of drug abuse in outbred rats. Data center created in 2014 to perform genome wide association studies on numerous behavioral traits that have well established relevance to drug abuse using outbred rats. | genome wide association studies, outbred rats, genetic studies, drug abuse, behavioral traits | is related to: RatGTEx Portal | addiction | NIDA P50 DA037844 | Free, Freely available | SCR_021788 | NIDA center for GWAS in outbred rats, Genes and Addiction NIDA center for GWAS in outbred rats | 2026-09-12 01:00:01 | 8 | |||||||
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auto-scoring Resource Report Resource Website |
auto-scoring (RRID:SCR_016015) | data processing software, data visualization software, software application, software resource | Visualization software that calculates derived scores for the electronic record system REDCap (Research Electronic Data Capture) to build and manage online surveys and databases. Used in the ABCD-STUDY (Adolescent Brain Cognitive Development - STUDY) report framework. | visual, data, processing, calculate, derived, score, electronic, record, system, data, capture, research | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016015 | 2026-09-12 12:58:34 | 0 | |||||||||
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little-man-task Resource Report Resource Website |
little-man-task (RRID:SCR_016018) | data management software, data processing software, data transfer software, software application, software resource | Software tool to manage data and derived results. It is used for import of derived measures into REDCap (Research Electronic Data Capture). | capture, data, manage, derive, measure, abcd, study | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016018 | 2026-09-12 12:58:34 | 0 | |||||||||
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Marmoset Brain Connectivity Atlas Resource Report Resource Website 10+ mentions |
Marmoset Brain Connectivity Atlas (RRID:SCR_015964) | atlas, data or information resource, data repository, database, service resource, storage service resource | Brain connectivity atlas to create systematic, digital repository for data on connections between different cortical areas, in primate species. Data repository for connections between different cortical areas in marmoset monkeys. Allows access to data set and enables other interpretations of data, in light of future evolution of knowledge about marmoset cortex. | cortex, marmoset, monkey, cerebral, brain, architecture, primate |
has parent organization: Monash University; Melbourne; Australia has parent organization: Nencki Institute of Experimental Biology; Warsaw; Poland works with: Nencki-Monash template |
Australian Research Council CE140100007; Australian Research Council DP140101968; European Regional Development Fund ; International Neuroinformatics Coordinating Facility ; NIDA R01 DA036400; NIMH R01 MH087988 |
DOI:10.1038/s41467-020-14858-0 PMID:27099164 |
Free, Freely available | http://marmoset.braincircuits.org, http://analysis.marmosetbrain.org | SCR_015964 | Marmoset Monkey Cerebral Cortex Connectivity Atlas | 2026-09-12 12:58:33 | 26 | ||||||
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redcap-completion Resource Report Resource Website |
redcap-completion (RRID:SCR_016019) | data management software, software application, software resource | Software to measure item level completion in a large REDCap project. It provides a web-interface to review data and it is used in the ABCD project to assess data collection sites for the reached level of completion. | measure, item, level, completion, large, electronic, data, capture, research, review, data, collection |
is related to: University of California at San Diego; California; USA works with: REDCap |
NIDA U24 DA041123 | Free, Available for download | SCR_016019 | 2026-09-12 12:58:34 | 0 | |||||||||
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timeline-followback Resource Report Resource Website |
timeline-followback (RRID:SCR_016017) | data acquisition software, data processing software, software application, software resource, standalone software | Software to capture subject information about substance use using local copies of external files provided by the abcd-report framework of ABCD. No connection to REDCap is attempted to get events and participant names but local files are read in to supply this information. | capture, subject, information, drug, abuse, local, copy, event, abcd, participant | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016017 | 2026-09-12 12:58:34 | 0 | |||||||||
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aux-file-upload Resource Report Resource Website |
aux-file-upload (RRID:SCR_016026) | data management software, data processing software, data transfer software, software application, software resource | Software application to upload functional MR imaging runs produce auxilary data that can be collected centrally. Connects to a subject database research electronic data capture (REDCap). | upload, data, transmitted, addition, basic, calculation, subject, database, research, electronic, capture, imaging, session, abcd |
is related to: University of California at San Diego; California; USA works with: ABCD Study works with: REDCap |
NIDA U24 DA041123 | Free, Available for download | SCR_016026 | 2026-09-12 12:58:34 | 0 | |||||||||
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FIONA-QC-PHANTOM Resource Report Resource Website 1+ mentions |
FIONA-QC-PHANTOM (RRID:SCR_016024) | data analysis software, data processing software, software application, software resource | Software for online quality control operations performed on Phantom MRI data. It checks the accuracy and reproducibility of data. | application, quality, control, operation, phantom, MRI, data, accurate, reproducible, online, qc |
is related to: University of California at San Diego; California; USA is related to: ABCD Study works with: Diffusion MRI - In-vivo and Phantom Data |
NIDA U24 DA041123 | Free, Available for download | SCR_016024 | 2026-09-12 12:58:34 | 1 | |||||||||
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nih-ipad-app-end-point Resource Report Resource Website |
nih-ipad-app-end-point (RRID:SCR_016029) | data acquisition software, data processing software, data storage software, software application, software resource | Data collection software for centrally and securely storing data from the NIH iPad application. It allows users to capture results from multiple iPads at a central location. | abcd, collect, tool, central, storing, data, NIH, iPad, application, secure, capture, result, multiple, location | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016029 | 2026-09-12 12:58:34 | 0 |
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