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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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DBscorer Resource Report Resource Website |
DBscorer (RRID:SCR_022334) | data processing software, software application, software resource, data analysis software | Open source, MATLAB based software for forced swim test and tail suspension test video analysis. | OpenBehavior, forced swim test, tail suspension test, video analysis, measures of depressive like behavior in rodents | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-21.2021 | Free, Available for download, Freely available | https://github.com/swanandlab/DBscorer | SCR_022334 | 2026-08-04 09:44:59 | 0 | ||||||||
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Modular LED Displays project Resource Report Resource Website |
Modular LED Displays project (RRID:SCR_022704) | instrument resource, portal, data or information resource, project portal | Provides customized display systems used in neuroscientific studies in insects and other small animals. System includes custom built modular LED panels and software. LED panels of various sizes can be arranged/grouped in different shapes for diverse setups. System provides millisecond refresh, precise synchronization, customizable color combinations, and varied display configurations and addresses most technical challenges of small animal vision experiments and is thoroughly documented for replicability. | Instrument, OpenBehavior, fly vision, insects, behavioral neuroscience, customized display system, small animal vision experiments |
is listed by: OpenBehavior has parent organization: Howard Hughes Medical Institute |
DOI:10.1101/2022.08.02.502550 | Free, Freely available | https://reiserlab.github.io/Modular-LED-Display/, https://github.com/reiserlab/Modular-LED-Display | SCR_022704 | Modular LED Displays | 2026-08-04 09:45:05 | 0 | |||||||
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Pi USB Cam project Resource Report Resource Website |
Pi USB Cam project (RRID:SCR_022834) | instrument resource, portal, data or information resource, project portal | Project related to video recording.Provides system for high throughput video capture. Pi USB Cam system includes low cost Raspberry Pi microcomputer, DIY electronics peripherals, freely available open-source firmware, and custom 3D-printed casings. | OpenBehavior, Instrument, video capture, Raspberry Pi microcomputer, DIY electronics peripherals |
is listed by: OpenBehavior has parent organization: University of Illinois at Chicago; Illinois; USA |
DOI:10.1523/ENEURO.0224-22.2022 | Free, Freely available | SCR_022834 | Pi USB Cam system, Pi USB Cam | 2026-08-04 09:45:07 | 0 | ||||||||
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Histological E data Registration in rodent Brain Spaces Resource Report Resource Website 1+ mentions |
Histological E data Registration in rodent Brain Spaces (RRID:SCR_022776) | HERBS | data processing software, data visualization software, software application, software resource | Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space. | OpenBehavior, image visualisation, image registration, histological E-data registration, brain space | is listed by: OpenBehavior | DOI:10.1101/2021.10.01.462770 | SCR_022781, https://edspace.american.edu/openbehavior/project/herbs/ | SCR_022776 | 2026-08-04 09:45:09 | 1 | ||||||||
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3D Printed Superfusion Chamber Resource Report Resource Website |
3D Printed Superfusion Chamber (RRID:SCR_022901) | instrument resource, portal, data or information resource, project portal | Project consists of suite of 3D-printed tools including superfusion chamber with independent brain presser and animal stand. Modular device that facilitates transfer of pharmacological agents and brain access for electrodes and/or lenses for imaging. Provides stable conditions for electrophysiological and neuroimaging recordings. Device can be print either in-house or through 3d-printing service. | Open Behavior, electrophysiological and neuroimaging recordings, 3D-printed tools, superfusion chamber, brain presser, animal stand | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0305-22.2022 | https://gitlab.com/lab-equipment-assemblies1/superfusion-chamber/-/tree/master | SCR_022901 | 3D Printed Superfusion Chamber project | 2026-08-04 09:45:07 | 0 | ||||||||
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Attys project Resource Report Resource Website |
Attys project (RRID:SCR_021461) | instrument resource, portal, data or information resource, project portal | Portal related to biomedical signals.Provides wearable data acquisition device with special focus on biomedical signals such as heart activity (ECG), muscle activity (EMG) and brain activity (EEG).Open source high precision bluetooth data acquisition device. | Biomedical signals acquire, heart activity data acquire, muscle activity data acquire, brain activity data acquire, data acquisition device, bluetooth data acquisition device, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021461 | Attys | 2026-08-04 09:44:49 | 0 | |||||||||
|
AutonoMouse project Resource Report Resource Website |
AutonoMouse project (RRID:SCR_021462) | instrument resource, portal, data or information resource, project portal | Project related to self initiated conditioning and behavior tracking in mice. Provides automated system that can track large numbers (over 25) of socially housed mice through implanted RFID chips on mice. With RFID trackers and other analyses, behavior of mice can be tracked as they train and are subsequently tested on (or self-initiate testing in) odor discrimination task over months with thousands of trials performed every day. | AutonoMouse system control, PyQt5 control GUI, schedule ordering, experiment monitoring, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1371/journal.pone.0211571 | Free, Freely available | SCR_021462 | AutonoMouse | 2026-08-04 09:44:49 | 0 | ||||||||
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Autoreward2 project Resource Report Resource Website |
Autoreward2 project (RRID:SCR_021460) | instrument resource, portal, data or information resource, project portal | Project related to detection and rewarding rodents in modified T-maze task. System designed to detect and reward rodents in modified T maze provided by Ruhr University Bochum, Germany scientists. | Infrared triggered dual reward system, Autoreward2 system, detect rodents, reward rodents, Tmaze, OpenBehavior, Instrument |
is listed by: OpenBehavior has parent organization: Ruhr University Bochum; North Rhine-Westphalia; Germany |
Free, Freely available | SCR_021460 | Autoreward2 | 2026-08-04 09:44:49 | 0 | |||||||||
|
BPM Biosignals project Resource Report Resource Website |
BPM Biosignals project (RRID:SCR_021459) | instrument resource, portal, data or information resource, project portal | Portal as educational resource regarding construction and implementation of bioamplifiers as well as interpretation of biosignals. | Bioamplifier construction, bioamplifier implementation, biosignals interpretation, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021459 | BPM Biosignals | 2026-08-04 09:44:49 | 0 | |||||||||
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Automated mouse homecage two bottle choice test project Resource Report Resource Website |
Automated mouse homecage two bottle choice test project (RRID:SCR_021457) | instrument resource, portal, data or information resource, project portal | Project related to assessing preferences by mice among fluids in their homecages.Provided system includes homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. Used for automated mouse homecage two bottle choice test. | Homecage fitted apparatus, licks automated detection, licks photobeam based detection, two bottle choice task, instrument, equipment, USEDit, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021457 | Automated mouse homecage two bottle choice test | 2026-08-04 09:44:49 | 0 | |||||||||
|
Closed Loop System project Resource Report Resource Website |
Closed Loop System project (RRID:SCR_021475) | instrument resource, portal, data or information resource, project portal | Portal includes system for combined behavioral tracking, electrophysiology, and closed loop stimulation provided by University of Oslo scientists.Integrates Bonsai and Open Ephys with multiple modules.Provides guide for setting up this system. | Combined behavioral tracking, electrophysiology, closed loop stimulation, OpenBehavior, Instrument |
is listed by: OpenBehavior has parent organization: University of Oslo; Oslo; Norway |
DOI:10.1088/1741-2552/aacf45 | Free, Freely available | SCR_021475 | Closed Loop System | 2026-08-04 09:44:50 | 0 | ||||||||
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Ultrasonic Vocalizations Detector project Resource Report Resource Website |
Ultrasonic Vocalizations Detector project (RRID:SCR_021471) | instrument resource, portal, data or information resource, project portal | Project related to ultrasonic vocalizations detection. Provides device designed for automatic detection of 50kHz ultrasonic vocalizations. | Automated detection, 50 kHz, ultrasonic vocalizations, template matching in XBAT, Ultrasonic Vocalization Detector, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1016/j.jneumeth.2014.08.007 | Free, Freely available | SCR_021471 | Ultrasonic Vocalizations Detector | 2026-08-04 09:44:49 | 0 | ||||||||
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EthoWatcher Resource Report Resource Website 1+ mentions |
EthoWatcher (RRID:SCR_021504) | data processing software, software application, software resource, data analysis software | Software tool for behavioral and video tracking analysis in laboratory animals. Used to support detailed ethography, video tracking, and extraction of kinematic variables from digital video files of laboratory animals. | Video tracking, kinematic variables extraction. digital video files, laboratory animals, OpenBehavior |
is listed by: OpenBehavior is related to: EthoWatcher project |
DOI:10.1016/j.compbiomed.2011.12.002 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/ethowatcher/ | SCR_021504 | ETHOWATCHER | 2026-08-04 09:44:49 | 2 | |||||||
|
Feldman Lab Lickometer project Resource Report Resource Website |
Feldman Lab Lickometer project (RRID:SCR_021469) | instrument resource, portal, data or information resource, project portal | Project related to function of cerebral cortex. Included model system for studying cortical function is provided by UC Berkeley scientists. System includes lickometer which employs infrared beam and sensor to minimize electrical noise artifacts during neurophysiology experiments and can be easily mounted in micromanipulator for precise and repeatable positioning.Open source lickometer was designed in conjunction with open source water delivery system.Together, these provide basic hardware for DIY behavioral assay and reward system for mice. | Infrared beam, infrared sensor, neurophysiology experiment, DIY behavioral assay device, reward system for mice, OpenBehavior, Instrument |
is listed by: OpenBehavior has parent organization: University of California at Berkeley; Berkeley; USA |
Free, Freely available | SCR_021469 | Feldman Lab Lickometer | 2026-08-04 09:44:50 | 0 | |||||||||
|
Mousecam Resource Report Resource Website |
Mousecam (RRID:SCR_021503) | data processing software, software application, software resource, data analysis software | Software Python package with functions for extracting and analyzing data recorded using camera system.Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity. | Lightweight head mounted camera system, head movement sensors, monitor eye position, monitor pupil dilation, monitor whisking, monitor pinna movements, monitor head motion, unrestrained mice, freely behaving mice, multichannel electrophysiology, OpenBehavior |
is listed by: OpenBehavior is related to: Mousecam project |
DOI:10.1016/j.neuron.2018.09.020 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/mousecam/ | SCR_021503 | 2026-08-04 09:44:50 | 0 | ||||||||
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Hao Chen Lab Repository project Resource Report Resource Website |
Hao Chen Lab Repository project (RRID:SCR_021467) | instrument resource, portal, data or information resource, project portal | Project aims to establish computing platform for rodent behavior research using Raspberry Pi computer. They have built several devices for conducting operant conditioning and monitoring environmental data. | Computing platform, rodent behavior, Raspberry Pi computer, OpenBehavior, Instrument | is listed by: OpenBehavior | SCR_021467 | Hao Chen Lab Repository | 2026-08-04 09:44:49 | 0 | ||||||||||
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PiDose project Resource Report Resource Website |
PiDose project (RRID:SCR_021441) | instrument resource, portal, data or information resource, project portal | Project related to oral drug administration to group housed mice. Provides open source system for oral drug administration to group housed mice. System includes home cage attached device that weighs individual animals and administers daily dosage of drug solution based on each animal bodyweight through their drinking water. Group housed mice are identified through use of RFID tagging and receive both regular water and drug solution drops by licking at spout within PiDose module. | Oral drug administration, group housed mice, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1038/s41598-020-68477-2 | Free, Freely available | SCR_021441 | PiDose | 2026-08-04 09:44:48 | 0 | ||||||||
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openEyeTrack project Resource Report Resource Website |
openEyeTrack project (RRID:SCR_021399) | instrument resource, portal, data or information resource, project portal | Project related to measurement of fast eye movement dynamics.Tracking eye position in head fixed applications system created by scientists from Boston University. Includes software tool as part of multithreaded eye tracker and Teledyne DALSA Camera with GigE-V framework APIs for Linux. | Multithreaded eye tracker, tracking eye position system, head fixed application, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: openEyeTrack has parent organization: Boston University; Massachusetts; USA |
DOI:10.21105/joss.01631 | Free, Freely available | SCR_021399 | openEyeTrack | 2026-08-04 09:44:48 | 0 | ||||||||
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Actifield project Resource Report Resource Website 1+ mentions |
Actifield project (RRID:SCR_021452) | instrument resource, portal, data or information resource, project portal | Project related to measuring locomotor activity.System includes infrared motion detection and arduino to record activity in variety of chamber set ups. Provides actimeter and software tool to measure and record locomotor activity. | Measure locomotor activity, record locomotor activity, rodent locomotor activity, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1016/j.ohx.2018.e00047 | Free, Freely available | SCR_021452 | Actifield | 2026-08-04 09:44:49 | 1 | ||||||||
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Rodent Activity Detector project Resource Report Resource Website |
Rodent Activity Detector project (RRID:SCR_021451) | RAD | instrument resource, portal, data or information resource, project portal | Project related to tracking and recording activity in rodent home cages.Provides device that utilizes passive infrared (PIR) sensor to detect movement in cages and logs data to microSD card. Device is wireless and battery powered, and can record data for about 3 weeks on charge. | Passive infrared sensor, detect movement in cages, logs data to microSD card, wireless device, battery powered device, record data, instrument, equipment, USEDit, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.1523/eneuro.0160-19.2019 | Free, Freely available | SCR_021451 | Rodent Activity Detector | 2026-08-04 09:44:49 | 0 |
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