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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
DBscorer
 
Resource Report
Resource Website
DBscorer (RRID:SCR_022334) data processing software, software application, software resource, data analysis software Open source, MATLAB based software for forced swim test and tail suspension test video analysis. OpenBehavior, forced swim test, tail suspension test, video analysis, measures of depressive like behavior in rodents is listed by: OpenBehavior DOI:10.1523/ENEURO.0305-21.2021 Free, Available for download, Freely available https://github.com/swanandlab/DBscorer SCR_022334 2026-08-04 09:44:59 0
Modular LED Displays project
 
Resource Report
Resource Website
Modular LED Displays project (RRID:SCR_022704) instrument resource, portal, data or information resource, project portal Provides customized display systems used in neuroscientific studies in insects and other small animals. System includes custom built modular LED panels and software. LED panels of various sizes can be arranged/grouped in different shapes for diverse setups. System provides millisecond refresh, precise synchronization, customizable color combinations, and varied display configurations and addresses most technical challenges of small animal vision experiments and is thoroughly documented for replicability. Instrument, OpenBehavior, fly vision, insects, behavioral neuroscience, customized display system, small animal vision experiments is listed by: OpenBehavior
has parent organization: Howard Hughes Medical Institute
DOI:10.1101/2022.08.02.502550 Free, Freely available https://reiserlab.github.io/Modular-LED-Display/, https://github.com/reiserlab/Modular-LED-Display SCR_022704 Modular LED Displays 2026-08-04 09:45:05 0
Pi USB Cam project
 
Resource Report
Resource Website
Pi USB Cam project (RRID:SCR_022834) instrument resource, portal, data or information resource, project portal Project related to video recording.Provides system for high throughput video capture. Pi USB Cam system includes low cost Raspberry Pi microcomputer, DIY electronics peripherals, freely available open-source firmware, and custom 3D-printed casings. OpenBehavior, Instrument, video capture, Raspberry Pi microcomputer, DIY electronics peripherals is listed by: OpenBehavior
has parent organization: University of Illinois at Chicago; Illinois; USA
DOI:10.1523/ENEURO.0224-22.2022 Free, Freely available SCR_022834 Pi USB Cam system, Pi USB Cam 2026-08-04 09:45:07 0
Histological E data Registration in rodent Brain Spaces
 
Resource Report
Resource Website
1+ mentions
Histological E data Registration in rodent Brain Spaces (RRID:SCR_022776) HERBS data processing software, data visualization software, software application, software resource Open source, extendable, intuitive and interactive software platform for image visualisation and image registration. Python based GUI for histological E-data registration in brain space. OpenBehavior, image visualisation, image registration, histological E-data registration, brain space is listed by: OpenBehavior DOI:10.1101/2021.10.01.462770 SCR_022781, https://edspace.american.edu/openbehavior/project/herbs/ SCR_022776 2026-08-04 09:45:09 1
3D Printed Superfusion Chamber
 
Resource Report
Resource Website
3D Printed Superfusion Chamber (RRID:SCR_022901) instrument resource, portal, data or information resource, project portal Project consists of suite of 3D-printed tools including superfusion chamber with independent brain presser and animal stand. Modular device that facilitates transfer of pharmacological agents and brain access for electrodes and/or lenses for imaging. Provides stable conditions for electrophysiological and neuroimaging recordings. Device can be print either in-house or through 3d-printing service. Open Behavior, electrophysiological and neuroimaging recordings, 3D-printed tools, superfusion chamber, brain presser, animal stand is listed by: OpenBehavior DOI:10.1523/ENEURO.0305-22.2022 https://gitlab.com/lab-equipment-assemblies1/superfusion-chamber/-/tree/master SCR_022901 3D Printed Superfusion Chamber project 2026-08-04 09:45:07 0
Attys project
 
Resource Report
Resource Website
Attys project (RRID:SCR_021461) instrument resource, portal, data or information resource, project portal Portal related to biomedical signals.Provides wearable data acquisition device with special focus on biomedical signals such as heart activity (ECG), muscle activity (EMG) and brain activity (EEG).Open source high precision bluetooth data acquisition device. Biomedical signals acquire, heart activity data acquire, muscle activity data acquire, brain activity data acquire, data acquisition device, bluetooth data acquisition device, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021461 Attys 2026-08-04 09:44:49 0
AutonoMouse project
 
Resource Report
Resource Website
AutonoMouse project (RRID:SCR_021462) instrument resource, portal, data or information resource, project portal Project related to self initiated conditioning and behavior tracking in mice. Provides automated system that can track large numbers (over 25) of socially housed mice through implanted RFID chips on mice. With RFID trackers and other analyses, behavior of mice can be tracked as they train and are subsequently tested on (or self-initiate testing in) odor discrimination task over months with thousands of trials performed every day. AutonoMouse system control, PyQt5 control GUI, schedule ordering, experiment monitoring, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1371/journal.pone.0211571 Free, Freely available SCR_021462 AutonoMouse 2026-08-04 09:44:49 0
Autoreward2 project
 
Resource Report
Resource Website
Autoreward2 project (RRID:SCR_021460) instrument resource, portal, data or information resource, project portal Project related to detection and rewarding rodents in modified T-maze task. System designed to detect and reward rodents in modified T maze provided by Ruhr University Bochum, Germany scientists. Infrared triggered dual reward system, Autoreward2 system, detect rodents, reward rodents, Tmaze, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: Ruhr University Bochum; North Rhine-Westphalia; Germany
Free, Freely available SCR_021460 Autoreward2 2026-08-04 09:44:49 0
BPM Biosignals project
 
Resource Report
Resource Website
BPM Biosignals project (RRID:SCR_021459) instrument resource, portal, data or information resource, project portal Portal as educational resource regarding construction and implementation of bioamplifiers as well as interpretation of biosignals. Bioamplifier construction, bioamplifier implementation, biosignals interpretation, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021459 BPM Biosignals 2026-08-04 09:44:49 0
Automated mouse homecage two bottle choice test project
 
Resource Report
Resource Website
Automated mouse homecage two bottle choice test project (RRID:SCR_021457) instrument resource, portal, data or information resource, project portal Project related to assessing preferences by mice among fluids in their homecages.Provided system includes homecage fitted apparatus for automated, photobeam based detection of licks in two bottle choice task. Used for automated mouse homecage two bottle choice test. Homecage fitted apparatus, licks automated detection, licks photobeam based detection, two bottle choice task, instrument, equipment, USEDit, OpenBehavior, Instrument is listed by: OpenBehavior Free, Freely available SCR_021457 Automated mouse homecage two bottle choice test 2026-08-04 09:44:49 0
Closed Loop System project
 
Resource Report
Resource Website
Closed Loop System project (RRID:SCR_021475) instrument resource, portal, data or information resource, project portal Portal includes system for combined behavioral tracking, electrophysiology, and closed loop stimulation provided by University of Oslo scientists.Integrates Bonsai and Open Ephys with multiple modules.Provides guide for setting up this system. Combined behavioral tracking, electrophysiology, closed loop stimulation, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: University of Oslo; Oslo; Norway
DOI:10.1088/1741-2552/aacf45 Free, Freely available SCR_021475 Closed Loop System 2026-08-04 09:44:50 0
Ultrasonic Vocalizations Detector project
 
Resource Report
Resource Website
Ultrasonic Vocalizations Detector project (RRID:SCR_021471) instrument resource, portal, data or information resource, project portal Project related to ultrasonic vocalizations detection. Provides device designed for automatic detection of 50kHz ultrasonic vocalizations. Automated detection, 50 kHz, ultrasonic vocalizations, template matching in XBAT, Ultrasonic Vocalization Detector, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1016/j.jneumeth.2014.08.007 Free, Freely available SCR_021471 Ultrasonic Vocalizations Detector 2026-08-04 09:44:49 0
EthoWatcher
 
Resource Report
Resource Website
1+ mentions
EthoWatcher (RRID:SCR_021504) data processing software, software application, software resource, data analysis software Software tool for behavioral and video tracking analysis in laboratory animals. Used to support detailed ethography, video tracking, and extraction of kinematic variables from digital video files of laboratory animals. Video tracking, kinematic variables extraction. digital video files, laboratory animals, OpenBehavior is listed by: OpenBehavior
is related to: EthoWatcher project
DOI:10.1016/j.compbiomed.2011.12.002 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/ethowatcher/ SCR_021504 ETHOWATCHER 2026-08-04 09:44:49 2
Feldman Lab Lickometer project
 
Resource Report
Resource Website
Feldman Lab Lickometer project (RRID:SCR_021469) instrument resource, portal, data or information resource, project portal Project related to function of cerebral cortex. Included model system for studying cortical function is provided by UC Berkeley scientists. System includes lickometer which employs infrared beam and sensor to minimize electrical noise artifacts during neurophysiology experiments and can be easily mounted in micromanipulator for precise and repeatable positioning.Open source lickometer was designed in conjunction with open source water delivery system.Together, these provide basic hardware for DIY behavioral assay and reward system for mice. Infrared beam, infrared sensor, neurophysiology experiment, DIY behavioral assay device, reward system for mice, OpenBehavior, Instrument is listed by: OpenBehavior
has parent organization: University of California at Berkeley; Berkeley; USA
Free, Freely available SCR_021469 Feldman Lab Lickometer 2026-08-04 09:44:50 0
Mousecam
 
Resource Report
Resource Website
Mousecam (RRID:SCR_021503) data processing software, software application, software resource, data analysis software Software Python package with functions for extracting and analyzing data recorded using camera system.Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity. Lightweight head mounted camera system, head movement sensors, monitor eye position, monitor pupil dilation, monitor whisking, monitor pinna movements, monitor head motion, unrestrained mice, freely behaving mice, multichannel electrophysiology, OpenBehavior is listed by: OpenBehavior
is related to: Mousecam project
DOI:10.1016/j.neuron.2018.09.020 Free, Available for download, Freely Available https://edspace.american.edu/openbehavior/project/mousecam/ SCR_021503 2026-08-04 09:44:50 0
Hao Chen Lab Repository project
 
Resource Report
Resource Website
Hao Chen Lab Repository project (RRID:SCR_021467) instrument resource, portal, data or information resource, project portal Project aims to establish computing platform for rodent behavior research using Raspberry Pi computer. They have built several devices for conducting operant conditioning and monitoring environmental data. Computing platform, rodent behavior, Raspberry Pi computer, OpenBehavior, Instrument is listed by: OpenBehavior SCR_021467 Hao Chen Lab Repository 2026-08-04 09:44:49 0
PiDose project
 
Resource Report
Resource Website
PiDose project (RRID:SCR_021441) instrument resource, portal, data or information resource, project portal Project related to oral drug administration to group housed mice. Provides open source system for oral drug administration to group housed mice. System includes home cage attached device that weighs individual animals and administers daily dosage of drug solution based on each animal bodyweight through their drinking water. Group housed mice are identified through use of RFID tagging and receive both regular water and drug solution drops by licking at spout within PiDose module. Oral drug administration, group housed mice, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1038/s41598-020-68477-2 Free, Freely available SCR_021441 PiDose 2026-08-04 09:44:48 0
openEyeTrack project
 
Resource Report
Resource Website
openEyeTrack project (RRID:SCR_021399) instrument resource, portal, data or information resource, project portal Project related to measurement of fast eye movement dynamics.Tracking eye position in head fixed applications system created by scientists from Boston University. Includes software tool as part of multithreaded eye tracker and Teledyne DALSA Camera with GigE-V framework APIs for Linux. Multithreaded eye tracker, tracking eye position system, head fixed application, OpenBehavior, Instrument is listed by: OpenBehavior
is related to: openEyeTrack
has parent organization: Boston University; Massachusetts; USA
DOI:10.21105/joss.01631 Free, Freely available SCR_021399 openEyeTrack 2026-08-04 09:44:48 0
Actifield project
 
Resource Report
Resource Website
1+ mentions
Actifield project (RRID:SCR_021452) instrument resource, portal, data or information resource, project portal Project related to measuring locomotor activity.System includes infrared motion detection and arduino to record activity in variety of chamber set ups. Provides actimeter and software tool to measure and record locomotor activity. Measure locomotor activity, record locomotor activity, rodent locomotor activity, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1016/j.ohx.2018.e00047 Free, Freely available SCR_021452 Actifield 2026-08-04 09:44:49 1
Rodent Activity Detector project
 
Resource Report
Resource Website
Rodent Activity Detector project (RRID:SCR_021451) RAD instrument resource, portal, data or information resource, project portal Project related to tracking and recording activity in rodent home cages.Provides device that utilizes passive infrared (PIR) sensor to detect movement in cages and logs data to microSD card. Device is wireless and battery powered, and can record data for about 3 weeks on charge. Passive infrared sensor, detect movement in cages, logs data to microSD card, wireless device, battery powered device, record data, instrument, equipment, USEDit, OpenBehavior, Instrument is listed by: OpenBehavior DOI:10.1523/eneuro.0160-19.2019 Free, Freely available SCR_021451 Rodent Activity Detector 2026-08-04 09:44:49 0

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