Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Current Facets and Filters

  • Related Resources:omictools (facet)

Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

2,818 Results - per page

Show More Columns | Download Top 1000 Results

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
European Genome phenome Archive
 
Resource Report
Resource Website
500+ mentions
European Genome phenome Archive (RRID:SCR_004944) EGA data or information resource, data repository, data access protocol, data set, software resource, storage service resource, service resource, web service Web service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The repository allows you to explore datasets from numerous genotype experiments, supplied by a range of data providers. The EGA''s role is to provide secure access to the data that otherwise could not be distributed to the research community. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. As an example, only members of the EGA team are allowed to process data in a secure computing facility. Once processed, all data are encrypted for dissemination and the encryption keys are delivered offline. The EGA also supports data access only for the consortium members prior to publication. phenomenon, trait, sequence, genotype, experiment, case-control, population, family study, snp, cnv, phenotype, genomic, gold standard, bio.tools is used by: Blueprint Epigenome
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
lists: METABRIC
is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
has parent organization: European Bioinformatics Institute
PMID:34791407 Restricted BioTools:ega, biotools:ega, r3d100011242, OMICS_01028, nlx_91316 https://ega-archive.org/, https://bio.tools/ega, https://bio.tools/ega, https://doi.org/10.17616/R3W619 SCR_004944 , The European Genome-phenome Archive, The European Genome-phenome Archive (EGA), EGA 2026-08-05 10:44:08 605
PubMed
 
Resource Report
Resource Website
10000+ mentions
PubMed (RRID:SCR_004846) data or information resource, bibliography, database Public bibliographic database that provides access to citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full-text content from PubMed Central and publisher web sites. PubMed citations and abstracts include fields of biomedicine and health, covering portions of life sciences, behavioral sciences, chemical sciences, and bioengineering. Provides access to additional relevant web sites and links to other NCBI molecular biology resources. Publishers of journals can submit their citations to NCBI and then provide access to full-text of articles at journal web sites using LinkOut. biomedical, literature, publication, open, access, bibliography, gold standard is used by: Knowledgebase for Addiction Related Genes
is used by: Drug Related Gene Database
is used by: ChannelPedia
is used by: Molecular Imaging and Contrast Agent Database
is used by: Colwiz
is used by: Nowomics
is used by: PINT
is listed by: OMICtools
is listed by: FORCE11
is listed by: LabWorm
is related to: Chilibot: Gene and Protein relationships from MEDLINE
is related to: ImpactStory
is related to: Automated recognition of brain region mentions in neuroscience literature.
is related to: Information Hyperlinked Over Proteins
is related to: PubMed Central
is related to: PIE the search
is related to: Anne O'Tate
is related to: PubBrain
is related to: Europe PubMed Central
is related to: ResearchGate
is related to: CBioC
is related to: CiteAb
is related to: LitInspector
is related to: RefMED
is related to: Pubmed Commons
is related to: iBIOFind
is related to: Ensembl Variation
is related to: MEDLINE
is related to: XplorMed
is related to: Linked Neuron Data
is related to: NCBI Structure
is related to: MeSH
is related to: MEDLINE
is related to: EBIMed
is related to: Coremine Medical
is related to: NIF Literature
is related to: GoPubMed
is related to: Integrated Auto-Extracted Annotation
is related to: Polbase
is related to: Integrated Manually Extracted Annotation
is related to: DaTo
is related to: NIF Registry Automated Crawl Data
has parent organization: NCBI
works with: Open Regulatory Annotation Database
works with: rentrez
NLM Free, Freely available nlx_82958, OMICS_01195 http://www.force11.org/node/4652, http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed SCR_004846 Pub Med 2026-08-05 10:44:08 98390
SEQanswers Wiki
 
Resource Report
Resource Website
1+ mentions
SEQanswers Wiki (RRID:SCR_004810) SEQwiki data or information resource, narrative resource, wiki, software repository, software resource Wiki forum providing an extensive catalogue of manually categorized analysis tools, technologies and information about service providers, maintained by the members of the SEQanswers community. * Minimum Information about a high-throughput Sequencing Experiment * Software Hub: The place to add to, edit or browse the software database on SEQwiki. * Service Providers: Browse or edit the list of NGS service facilities. * How-to Hub: Mini reviews for the most used tools broken down by common tasks. * Developers Hub: The place to discuss the development of the SEQwiki site and its associated data. See also publishing SEQ*. * Publications: Publication about SEQwiki and selected citations. sequencing, high-throughput sequencing, service provider, next generation sequencing, next-generation genomics, genomics, data set, wiki, software is listed by: 3DVC
is listed by: OMICtools
has parent organization: SEQanswers
PMID:22086956 The community can contribute to this resource OMICS_01743, nlx_143911 SCR_004810 2026-08-05 10:44:07 1
NCBI Sequence Read Archive (SRA)
 
Resource Report
Resource Website
5000+ mentions
NCBI Sequence Read Archive (SRA) (RRID:SCR_004891) SRA data or information resource, data repository, database, storage service resource, service resource Repository of raw sequencing data from next generation of sequencing platforms including including Roche 454 GS System, Illumina Genome Analyzer, Applied Biosystems SOLiD System, Helicos Heliscope, Complete Genomics, and Pacific Biosciences SMRT. In addition to raw sequence data, SRA now stores alignment information in form of read placements on reference sequence. Data submissions are welcome. Archive of high throughput sequencing data,part of international partnership of archives (INSDC) at NCBI, European Bioinformatics Institute and DNA Database of Japan. Data submitted to any of this three organizations are shared among them. sequence, blast, next-generation sequence, alignment, read placement, reference sequence, roche 454 gs system, illumina genome analyzer, applied biosystems solid system, helicos heliscope, complete genomics, pacific biosciences smrt, high-throughput sequencing, data analysis service, gold standard is recommended by: National Library of Medicine
is recommended by: NIDDK Information Network (dkNET)
is listed by: OMICtools
is related to: European Nucleotide Archive (ENA)
is related to: RecountDB
is related to: SRAdb
is related to: DDBJ Sequence Read Archive
is related to: Bgee: dataBase for Gene Expression Evolution
is related to: NCBI BioSample
is related to: DDBJ Sequence Read Archive
is related to: METAGENOTE
has parent organization: NCBI
works with: SARS-CoV-2-Sequences
works with: Signaling Pathways Project
NLM PMID:22009675
PMID:21062823
Free, Available for download, Freely available OMICS_01031, nlx_86174, r3d100010775 https://doi.org/10.17616/R31S69 SCR_004891 Sequence Read Archive, , SRA, NCBI SRA 2026-08-05 10:44:08 6671
Classifier for Metagenomic Sequences
 
Resource Report
Resource Website
100+ mentions
Classifier for Metagenomic Sequences (RRID:SCR_004929) ClaMS software resource, data processing software, software application, data analysis software THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 2nd, 2023. Sequence composition based classifier for metagenomic sequences. It works by capturing signatures of each sequence based on the sequence composition. Each sequence is modeled as a walk in a de Bruijn graph with underlying Markov chain properties. ClaMS captures stationary parameters of the underlying Markov chain as well as structural parameters of the underlying de Bruijn graph to form this signature. In practice, for each sequence to binned, such a signature is computed and matched to similar signatures computed for the training sets. The best match that also qualifies the normalized distance cut-off wins. In the case that the best match does not qualify this cut-off, the sequence remains un-binned. metagenome, classification, sequence is listed by: OMICtools
has parent organization: DOE Joint Genome Institute
DOE contract DE-AC02-05CH11231 THIS RESOURCE IS NO LONGER IN SERVICE SCR_005519, nlx_144629, OMICS_01452 SCR_004929 2026-08-05 10:44:08 150
GASVPro
 
Resource Report
Resource Website
1+ mentions
GASVPro (RRID:SCR_005259) GASVPro data processing software, software application, sequence analysis software, data analysis software, software resource Software tool combining both paired read and read depth signals into probabilistic model which can analyze multiple alignments of reads. Used to find structural variation in both normal and cancer genomes using data from variety of next-generation sequencing platforms. Used to predict structural variants directly from aligned reads in SAM/BAM format.Combines read depth information along with discordant paired read mappings into single probabilistic model two common signals of structural variation. When multiple alignments of read are given, GASVPro utilizes Markov Chain Monte Carlo procedure to sample over the space of possible alignments. structural variation, genome, genomics, alignment, sequencing, variant, variation, detection, dna, paired, end, read, sequence is listed by: OMICtools
is related to: GASV
has parent organization: Brown University; Rhode Island; USA
NHGRI R01 HG5690;
Burroughs Wellcome Career Award at the Scientific Interface
PMID:22452995 Free, Available for download, Freely available OMICS_00317 http://code.google.com/p/gasv/downloads/list SCR_005259 GASVPro: Geometric Analysis of Structural Variants 2026-08-05 10:44:12 8
PRISM (Stanford database)
 
Resource Report
Resource Website
10000+ mentions
PRISM (Stanford database) (RRID:SCR_005375) PRISM data or information resource, database, data analysis service, production service resource, service resource, analysis service resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5,2022.Tool that predicts interactions between transcription factors and their regulated genes from binding motifs. Understanding vertebrate development requires unraveling the cis-regulatory architecture of gene regulation. PRISM provides accurate genome-wide computational predictions of transcription factor binding sites for the human and mouse genomes, and integrates the predictions with GREAT to provide functional biological context. Together, accurate computational binding site prediction and GREAT produce for each transcription factor: 1. putative binding sites, 2. putative target genes, 3. putative biological roles of the transcription factor, and 4. putative cis-regulatory elements through which the factor regulates each target in each functional role., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. genomic, transcription factor, function, transcription factor binding site, transcription factor regulator, biological role, target gene, target genomic region, genome, FASEB list is listed by: OMICtools
is listed by: SoftCite
is related to: GREAT: Genomic Regions Enrichment of Annotations Tool
has parent organization: Stanford University School of Medicine; California; USA
PMID:23382538 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_00489 SCR_005375 Predicting Regulatory Information from Single Motifs 2026-08-05 10:44:14 40813
RSeQC
 
Resource Report
Resource Website
1000+ mentions
RSeQC (RRID:SCR_005275) RSeQC data processing software, software application, sequence analysis software, data analysis software, software resource Software package to comprehensively evaluate different aspects of RNA-seq experiments, such as sequence quality, GC bias, polymerase chain reaction bias, nucleotide composition bias, sequencing depth, strand specificity, coverage uniformity and read distribution over the genome structure. RSeQC takes both SAM and BAM files as input, which can be produced by most RNA-seq mapping tools as well as BED files, which are widely used for gene models. python, qc, rna-seq, high throughput sequencing is listed by: OMICtools PMID:22743226 OMICS_01235 SCR_005275 rseqc - RNA-seq quality control package 2026-08-05 10:44:13 1302
Hmmer
 
Resource Report
Resource Website
5000+ mentions
Hmmer (RRID:SCR_005305) HMMER data processing software, software application, data analysis software, software resource, data analysis service, production service resource, service resource, analysis service resource Tool for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST. homolog, protein sequence, source code, FASEB list is used by: Mantis
is listed by: OMICtools
is listed by: Genetic Analysis Software
is listed by: Debian
is listed by: SoftCite
is related to: VectorBase
has parent organization: Janelia Research
Howard Hughes Medical Institute PMID:21593126
DOI:10.1093/bioinformatics/14.9.755
OMICS_00996, nlx_144358 https://sources.debian.org/src/hmmer/ SCR_005305 HMMER - biosequence analysis using profile hidden Markov models 2026-08-05 10:44:13 8774
SpliceSeq
 
Resource Report
Resource Website
100+ mentions
SpliceSeq (RRID:SCR_005267) SpliceSeq software resource, data processing software, software application, data analysis software A Java application to investigate alternative mRNA splicing patterns in data from high-throughput mRNA sequencing studies. Sequence reads are mapped to splice graphs that unambiguously quantify the inclusion level of each exon and splice junction. The graphs are then traversed to predict the protein isoforms that are likely to result from the observed exon and splice junction reads. UniProt annotations are mapped to each protein isoform to identify potential functional impacts of alternative splicing. This tool may be used on a single RNASeq sample to identify genes with multiple spliceforms, on a pair of samples to identify differential splicing between the two, or on groups of samples to identify statistically significant group level differences in splicing patterns. SpliceSeq can be run from the install page as a java web start application to explore the sequencing data on their server or can be installed locally to analyze your own mRNA-Seq data. rna-seq, mrna splicing pattern is listed by: OMICtools
has parent organization: University of Texas MD Anderson Cancer Center
OMICS_01267 SCR_005267 2026-08-05 10:44:12 169
becas
 
Resource Report
Resource Website
10+ mentions
becas (RRID:SCR_005337) data access protocol, service resource, software resource, web service Web application, API and widget able to recognize and annotate biomedical concepts in text.Provides annotations for isolated, nested and intersected entities.Identifies concepts from multiple semantic groups, providing preferred names and enriching them with references to public knowledge resources. Annotation, biomedical concept recognition, annotate biomedical concepts, text, bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
has parent organization: University of Aveiro; Aveiro; Portugal
Free, Freely available biotools:becas, OMICS_01173 https://bioinformatics.ua.pt/software/becas/, https://bio.tools/becas SCR_005337 2026-08-05 10:44:13 12
NCBO Annotator
 
Resource Report
Resource Website
1+ mentions
NCBO Annotator (RRID:SCR_005329) NCBO Annotator data access protocol, software resource, production service resource, service resource, web service A Web service that annotates textual metadata (e.g. journal abstract) with relevant ontology concepts. NCBO uses this Web service to annotate resources in the NCBO Resource Index. They also provide this Web service as a stand-alone service for users. This Web service can be accessed through BioPortal or used directly in your software. Currently, the annotation workflow is based on syntactic concept recognition (using concept names and synonyms) and on a set of semantic expansion algorithms that leverage the semantics in ontologies (e.g., is_a relations). Their service methodology leverages ontologies to create annotations of raw text and returns them using semantic web standards. ontology, annotation, bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
is related to: STOP
has parent organization: BioPortal
has parent organization: National Centers for Biomedical Computing
has parent organization: Stanford University; Stanford; California
NHGRI U54 HG004028 PMID:19483092 biotools:bioportal, nlx_144389, OMICS_01172 https://bio.tools/bioportal SCR_005329 Open Biomedical Annotator, NCBO BioPortal Annotator 2026-08-05 10:44:13 6
CoPub
 
Resource Report
Resource Website
1+ mentions
CoPub (RRID:SCR_005327) CoPub data access protocol, service resource, software resource, web service Text mining tool that detects co-occuring biomedical concepts in abstracts from the MedLine literature database. It allows batch input of multiple human, mouse or rat genes and produces lists of keywords from several biomedical thesauri that are significantly correlated with the set of input genes. These lists link to Medline abstracts in which the co-occurring input genes and correlated keywords are highlighted. Furthermore, CoPub can graphically visualize differentially expressed genes and over-represented keywords in a network, providing detailed insight in the relationships between genes and keywords, and revealing the most influential genes as highly connected hubs. microarray, gene, literature, enrich, annotate, network, database, differential expression, bio.tools uses: MEDLINE
uses: Gene Ontology
is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
has parent organization: Netherlands Bioinformatics Centre
Netherlands Bioinformatics Centre PMID:18442992 Free, Public, Acknowledgement requested OMICS_01178, biotools:copub https://bio.tools/copub http://services.nbic.nl/cgi-bin/copub/CoPub.pl SCR_005327 2026-08-05 10:44:13 5
UnoSeq
 
Resource Report
Resource Website
1+ mentions
UnoSeq (RRID:SCR_005116) UnoSeq software toolkit, software library, software resource A Java library to analyze next generation sequencing data and especially perform expression profiling in organisms where no well-annotated reference genome exists. java, expression profile, next generation sequencing is listed by: OMICtools
has parent organization: SourceForge
PMID:20194116 OMICS_01296 SCR_005116 UnoSeq - Expression profiling with next generation sequencing without a reference genome 2026-08-05 10:44:11 1
Genomic Datasharing
 
Resource Report
Resource Website
1+ mentions
Genomic Datasharing (RRID:SCR_005233) GDS data or information resource, narrative resource, standard specification, listserv, feed NIH established expectations for sharing data obtained through NIH-funded genome-wide association studies (GWAS) with the implementation of the GWAS Policy. Information and resources related to the GWAS Policy can be found on this website. genome-wide association study, genome, data sharing is listed by: OMICtools
has parent organization: National Institutes of Health
NIH OMICS_00272 SCR_005233 GWAS, Genome-Wide Association Studies 2026-08-05 10:44:12 5
VARIANT
 
Resource Report
Resource Website
1000+ mentions
VARIANT (RRID:SCR_005194) VARIANT data processing software, software application, data analysis software, software resource, data analysis service, production service resource, service resource, analysis service resource Analysis tool that can report the functional properties of any variant in all the human, mouse or rat genes (and soon new model organisms will be added) and the corresponding neighborhoods. Also other non-coding extra-genic regions, such as miRNAs are included in the analysis. It not only reports the obvious functional effects in the coding regions but also analyzes noncoding SNVs situated both within the gene and in the neighborhood that could affect different regulatory motifs, splicing signals, and other structural elements. These include: Jaspar regulatory motifs, miRNA targets, splice sites, exonic splicing silencers, calculations of selective pressures on the particular polymorphic positions, etc. Software analysis pipelines used in the analysis of NGS data are highly modular, heterogeneous, and rapidly evolving. VARIANT can easily be incorporated into a NGS resequencing pipeline either as a CLI or invoked a webservice. It inputs data directly from the most widely used programs for SNV detection., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. functional property, variant, gene, non-coding region, mirna, function, single nucleotide variant, next generation sequencing, command line is listed by: OMICtools
has parent organization: Principe Felipe Research Centre; Valencia; Spain
Spanish Ministry of Science and Innovation BIO2011-27069 PMID:22693211 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_00193 SCR_005194 Variant effect, VARIant ANalysis Tool 2026-08-05 10:44:12 1366
SNPdbe
 
Resource Report
Resource Website
1+ mentions
SNPdbe (RRID:SCR_005190) SNPdbe data or information resource, data repository, database, storage service resource, service resource A database to fill the annotation gap left by the high cost of experimental testing for functional significance of protein variants. It joins related bits of knowledge, currently distributed throughout various databases, into a consistent, easily accessible, and updatable resource. It currently covers over 155,000 protein sequences which come from more than 2,600 organisms. Overall more than one million single amino acid substitutions (SAASs) are referenced consisting of natural variants, SAASs from mutagenesis experiments and sequencing conflicts. SNPdbe offers the following pieces of information (if available) on each SAAS: * Experimentally derived functional and structural impact * Predicted functional effect * Associated disease * Average heterozygosity * Experimental evidence of the nsSNP * Evolutionary conservation of wildtype and mutant amino acid * Link-outs to external databases A convenient webinterface to query SAASs on the following levels is offered: * Protein and gene identifiers and keywords * Disease keywords * Protein sequence on different sequence identity thresholds * Variant identifier (dbSNP rs, SwissVar, PMD) or specific mutant like XposY and specified sequence They offer the possibility to submit protein sequences along with experimentally substantiated mutations in order to predict their functional effect and inclusion into our database. single amino acid substitution, protein variant, protein, variant, protein sequence, natural variant, mutagenesis, sequencing, mutation is listed by: OMICtools
has parent organization: ROSTLAB
PMID:22210871 Free for academic use, Non-commercial, Commercial use with permission, The community can contribute to this resource OMICS_00185 SCR_005190 SNPdbe - nsSNP database of functional effects, nsSNP database of functional effects 2026-08-05 10:44:12 4
SINA
 
Resource Report
Resource Website
100+ mentions
SINA (RRID:SCR_005067) SINA software resource, data analysis service, production service resource, service resource, analysis service resource Service to align and optionally taxonomically classify your rRNA gene sequences. The results can be combined with any other sequences aligned by SINA or taken from the SILVA databases by concatenation of FASTA files or using the ARB MERGE tool. Note: Submission is currently limited to at most 1000 sequences of at most 6000 bases each. If your requirements exceed this limitation, get Opens internal link in current windowSINA for local installation. alignment, taxonomic classification, rrna, gene sequence, fasta, bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
is related to: SILVA
is related to: ARB project
has parent organization: Max Planck Institute for Marine Microbiology; Bremen; Germany
PMID:22556368 Free, Available for download, Freely available OMICS_01438, biotools:sina https://bio.tools/sina, https://sources.debian.org/src/sina/, https://github.com/epruesse/SINA SCR_005067 SINA Alignment Service, SILVA Incremental Aligner 2026-08-05 10:44:10 369
SeqAnt
 
Resource Report
Resource Website
1+ mentions
SeqAnt (RRID:SCR_005186) SeqAnt software resource, data analysis service, production service resource, service resource, analysis service resource A free web service and open source software package that performs rapid, automated annotation of DNA sequence variants (single base mutations, insertions, deletions) discovered with any sequencing platform. Variant sites are characterized with respect to their functional type (Silent, Replacement, 5' UTR, 3' UTR, Intronic, Intergenic), whether they have been previously submitted to dbSNP, and their evolutionary conservation. Annotated variants can be viewed directly on the web browser, downloaded in a tab delimited text file, or directly uploaded in a Browser Extended Data (BED) format to the UCSC genome browser. SeqAnt further identifies all loci harboring two or more coding sequence variants that help investigators identify potential compound heterozygous loci within exome sequencing experiments. In total, SeqAnt resolves a significant bottleneck by allowing an investigator to rapidly prioritize the functional analysis of those variants of interest. annotation, dna sequence variant, single base mutation, insertion, deletion, sequencing, mutation, variant, sequence variant, perl, sequence, genome is listed by: OMICtools
has parent organization: Emory University; Georgia; USA
has parent organization: SourceForge
PMID:20854673 GNU General Public License, v2 OMICS_00182 SCR_005186 SeqAnt - Sequence Annotator 2026-08-05 10:44:11 2
PAZAR
 
Resource Report
Resource Website
10+ mentions
PAZAR (RRID:SCR_005410) PAZAR data or information resource, data repository, database, software resource, storage service resource, service resource Database that unites independently created and maintained data collections of transcription factor and regulatory sequence annotation. The flexible PAZAR schema permits the representation of diverse information derived from experiments ranging from biochemical protein-DNA binding to cellular reporter gene assays. Data collections can be made available to the public, or restricted to specific system users. The data ''boutiques'' within the shopping-mall-inspired system facilitate the analysis of genomics data and the creation of predictive models of gene regulation., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. transcription factor, target gene, regulatory sequence, transcription factor profile, annotation, sequence, profile, transcription factor binding profile, chip, chip-seq, gene, cis-regulatory element, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
has parent organization: University of British Columbia; British Columbia; Canada
has parent organization: SourceForge
PMID:18971253 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_00540, biotools:pazar https://bio.tools/pazar SCR_005410 2026-08-05 10:44:14 32

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. RRID Portal Resources

    Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.