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http://phylopythias.bifo.helmholtz-hzi.de/index.php?phase=wait
Web Server for Taxonomic Assignment of Metagenome Sequences that is a fast and accurate sequence composition-based classifier that utilizes the hierarchical relationships between clades. Taxonomic assignments with the web server can be made with a generic model, or with sample-specific models that users can specify and create. Several interactive visualization modes and multiple download formats allow quick and convenient analysis and downstream processing of taxonomic assignments.
Proper citation: PhyloPythiaS (RRID:SCR_011923) Copy
Database access to information services, educational opportunities, and resources in print and electronic format to faculty, students, and researchers in the schools of the health sciences.
Proper citation: University of Pittsburgh, Health Sciences Library System (RRID:SCR_011975) Copy
http://omabrowser.org/cgi-bin/gateway.pl
A database that identifies orthologs among publicly available, complete genomes. It offers a comprehensive search and numerous display options for 4.7 million proteins from 1000 species. The main features are the orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed.
Proper citation: OMA Browser (RRID:SCR_011978) Copy
http://compbio.med.harvard.edu/CGHweb/
Data analysis service enabling users to analyse their array-CGH data with multiple algorithms simultaneously.
Proper citation: CGHweb (RRID:SCR_010923) Copy
A web-based platform for functional interpretation of gene sets with features such as cross-species Gene Set Analysis (GSA), Flexible and Interactive GSA, simultaneous GSA for multiple gene set, and and a fully integrated network viewer for both visualizing GSA results and molecular networks.
Proper citation: gsGator (RRID:SCR_012035) Copy
Database of orthologous protein coding genes across vertebrates, arthropods, fungi, basal metazoans, and bacteria.
Proper citation: OrthoDB (RRID:SCR_011980) Copy
http://core-genomics.blogspot.de/
This blog focusses on next-generation sequencing and microarray technologies.
Proper citation: CoreGenomics (RRID:SCR_011985) Copy
http://cosmoss.org/bm/plantapdb
A phylogeny-based comprehensive database of plant transcription associated proteins.
Proper citation: PlanTAPDB (RRID:SCR_010897) Copy
A leading source of news on technology and innovation in life sciences IT, informatics, genomics, next-gen, drug discovery, development, and clinical trials.
Proper citation: Bio-IT World (RRID:SCR_011986) Copy
http://hyperbrowser.uio.no/hb/
A generic web-based system, providing statistical methodology and computing power to handle a variety of biological inquires on genomic datasets.
Proper citation: Genomic HyperBrowser (RRID:SCR_010909) Copy
https://genome-cancer.ucsc.edu/
A suite of web-based tools to visualize, integrate and analyze cancer genomics and its associated clinical data. It is possible to display your own clinical data within one of their datasets.
Proper citation: UCSC Cancer Genomics Browser (RRID:SCR_011796) Copy
http://weizhong-lab.ucsd.edu/metagenomic-analysis/
A customizable web server for fast metagenomic analysis.
Proper citation: WebMGA (RRID:SCR_011951) Copy
A sequence verification pipeline where users can submit trace files to verify if a clone''s physical sequence matches its reference sequence.
Proper citation: GenoREAD (RRID:SCR_012007) Copy
A genomics database project is an academic research program to identify molecular features of cancers that predict response to anti-cancer drugs.
Proper citation: Genomics of Drug Sensitivity in Cancer (RRID:SCR_011956) Copy
http://cdwscience.blogspot.fr/
A blog about genetics, genomics, and medical research.
Proper citation: My Biomedical Informatics Blog (RRID:SCR_012011) Copy
http://cbbiweb.uthscsa.edu/KMethylomes/
Datbase and web-based system for visualization and analysis of genome-wide methylation data of human cancers.
Proper citation: Cancer Methylome System (RRID:SCR_012013) Copy
http://54.235.254.95/histonehits/
A database for histone mutations and their phenotypes.
Proper citation: Histone Systematic Mutation Database (RRID:SCR_012015) Copy
A database of CpG islands and analytical tools for identifying comprehensive methylation profiles in cancer cells.
Proper citation: DBCAT (RRID:SCR_012014) Copy
A web-based application designed with an easy-to-use interface to facilitate the high-throughput assessment and prioritization of genes and missense alterations important for cancer tumorigenesis.
Proper citation: CRAVAT (RRID:SCR_012776) Copy
http://appris.bioinfo.cnio.es/
A database that houses annotations of human splice isoforms. It adds reliable protein structural and functional data and information from cross-species conservation. A visual representation of the annotations for each gene allows users to easily identify functional changes brought about by splicing events. In addition to collecting, integrating and analyzing reliable predictions of the effect of splicing events, it also selects a single reference sequence for each gene, termed the principal isoform, based on the annotations of structure, function and conservation for each transcript.
Proper citation: APPRIS (RRID:SCR_012019) Copy
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