Searching the RRID Resource Information Network
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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
Provides services including sequencing library preparation and sequencing on Illumina MiSeq and NovaSeq 6000 platforms. Supports single cell sequencing on 10X Genomics Chromium Controller. Provides Illumina Infinium Beadchips, which includes variety of whole genome genotyping arrays as well as Infinium MethylationEPIC BeadChip.
Proper citation: University of California at San Diego Institute for Genomic Medicine Genomics Center Core Facilitiy (RRID:SCR_022740) Copy
Supports leading edge research with free access to advanced computing hardware and software.
Proper citation: University of Pittsburgh Center for Research Computing Core Facility (RRID:SCR_022735) Copy
Center for high-throughput DNA sequence generation and the accompanying analysis. The sequence data generated by the center's machines are analyzed in a complex bioinformatics pipeline, and the data are deposited regularly in the public databases at the National Center for Biotechnology Information (NCBI).
Proper citation: Baylor College of Medicine Human Genome Sequencing Center (RRID:SCR_013605) Copy
Open source database used for analyzing and modeling compound interactions with human and animal organ models.Platform for experimental design, data management, and analysis, and to combine experimental data with reference data, to enable computational modeling. Resource for relating in vitro organ model data to multiple biochemical, preclinical, and clinical data sources on in vivo drug effects.
Proper citation: Microphysiology Systems Database (RRID:SCR_021126) Copy
https://github.com/KummerLab/SEQUIN
Analysis software for identification of synaptic loci from 3D image datasets.
Proper citation: SEQUIN:Synaptic Evaluation and QUantification by Imaging Nanostructure (RRID:SCR_026029) Copy
https://github.com/malonge/RagTag
Collection of software tools for scaffolding and improving modern genome assemblies. Reference-based scaffolder. Used for fast and flexible genome assembly scaffolding and improvement.
Proper citation: RagTag (RRID:SCR_027293) Copy
https://cephalopod.team/histotomography/Octo9/
Resource serves as a 'Digital Specimen' for Digital Organismal Biology, providing interactive Neuroglancer-based visualization and 3D segmentation masks for major organ systems, including the digestive, respiratory, vascular, and nervous systems. It specifically annotates novel neural tracts including the Intermediate Longitudinal Tracts (iLT) and Arm-to-Arm U-Tracts (AAUT) as well as ~300 additional tissue and organ level segmentations. Provides high-resolution (0.7 µm isotropic), whole-organism microCT reconstruction of an intact hatchling Octopus bimaculoides.
Proper citation: Octopus bimaculoides Histotomography Blueprint (RRID:SCR_027759) Copy
https://github.com/ReproNim/reproschema
Software standardized framework for creating, sharing, and reusing cognitive and clinical assessments. Standardized form generation and data collection schema to harmonize results by design across projects. Used for enhancing research reproducibility through standardized survey data collection.
Proper citation: ReproSchema (RRID:SCR_027848) Copy
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