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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
demuxlet Resource Report Resource Website |
demuxlet (RRID:SCR_027855) | software resource, software application, source code | Software tool that harnesses natural genetic variation to determine the sample identity of each droplet containing a single cell (singlet) and detect droplets containing two cells (doublets). Genetic multiplexing of barcoded single cell RNA-seq. | Genetic multiplexing of barcoded single cell RNA-seq, harnesses natural genetic variation, | NIAMSD R01AR071522; NIAID R21AI133337; NIDDK F30DK115167; NHLBI K25HL121295; NIDCR R03DE025665 |
PMID:29227470 | Free, Available for download, Freely available | SCR_027855 | 2026-08-03 09:39:15 | 0 | |||||||||
|
Scooby Resource Report Resource Website |
Scooby (RRID:SCR_028110) | software resource, source code, software application | Software aplication to predict scRNA-seq coverage and scATAC-seq insertion profiles along the genome at single-cell resolution. It leverages the pre-trained multi-omics profile predictor Borzoi as a foundation model, equips it with a cell-specific decoder, and fine-tunes its sequence embeddings. | convolutional neural networks, predict RNA-seq coverage, scATAC-seq insertion profiles, Borzoi, cell-specific decoder, | European Research Council ; Gene Regulation Observatory at the Broad Institute of MIT & Harvard ; NHLBI 5P01HL131477; NHGRI UM1 HG011986; NHLBI DP2 HL151353; German Research Foundation |
PMID:41125796 | Free, Available for download, Freely available | SCR_028110 | 2026-08-03 09:39:26 | 0 | |||||||||
|
HLAthena Resource Report Resource Website |
HLAthena (RRID:SCR_028691) | software resource, web application | Web tool and predictive model used by researchers to identify which small protein fragments (peptides) will be presented by human leukocyte antigen (HLA) proteins on the surface of cells. It is heavily used in the development of cancer immunotherapies and personalized | HLA-I presentation prediction, identify small protein fragments, human leukocyte antigen (HLA) proteins, surface of cells, | NCI RO1CA155010; NHLBI R01HL103532; NCI U24 CA224331; NCI R21 CA216772; NHGRI T32HG002295; NCI 5T32CA009172; NCI U24-CA210986; NCI U01 CA214125 |
PMID:31844290 | Free, Freely available | SCR_028691 | 2026-08-03 09:39:38 | 0 |
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