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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Authority Synonyms Record Last Update Mentions Count
University of Michigan Center for Gastrointestinal Research
 
Resource Report
Resource Website
University of Michigan Center for Gastrointestinal Research (RRID:SCR_015605) UMCGR data or information resource, organization portal, portal Center whose goal is to investigate signal transduction mechanisms regulating homeostasis and GI disorders. Their approach includes studies on genetics and gene regulation, cellular signaling pathways, receptors and ion channels. UMCGR, gastrointestinal research, GI functions, homeostasis, cellular signaling pathway, gene regulation is listed by: NIDDK Information Network (dkNET)
is parent organization of: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core
is parent organization of: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core
is parent organization of: University of Michigan Center for Gastrointestinal Research Molecular Biology Core
is parent organization of: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core
has organization facet: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core
has organization facet: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core
has organization facet: University of Michigan Center for Gastrointestinal Research Molecular Biology Core
has organization facet: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core
is organization facet of: Digestive Disease Centers
digestive disease NIDDK P30 DK034933 Available to affiliated researchers SCR_015605 SciCrunch Registry 2026-11-07 12:01:30 0
imctools
 
Resource Report
Resource Website
10+ mentions
Rating or validation data
imctools (RRID:SCR_017132) IMCtools data processing software, software application, software resource Software Python package that implements preprocessing pipeline for imaging mass cytometry data. Can convert IMC raw files to tiff files that are used as inputs into CellProfiller, Ilastik, Fiji etc. preprocessing, pipeline, imaging, mass, cytometry, data, convert, IMC, raw, file, TIFF has parent organization: University of Zurich; Zurich; Switzerland
is a plug in for: Fiji
European Research Council ;
NIDDK UC4 DK108132;
PhosphonetPPM and MetastasiX SystemsX grant ;
Roche Postdoctoral Fellowship ;
SNSF Assistant Professorship grant ;
Swiss National Science Foundation
PMID:29605184 Free, Available for download, Freely available https://bodenmillergroup.github.io/imctools/build/html/index.html SCR_017132 SciCrunch Registry imaging mass spectrometry tools 2026-11-07 12:01:34 25
Chemoproteomic identification and therapeutic validation of proteins of metabolic significance
 
Resource Report
Resource Website
Chemoproteomic identification and therapeutic validation of proteins of metabolic significance (RRID:SCR_015847) data or information resource, database, portal, project portal Database portal for a project that aims to discover and characterize new molecular pathways that can be targeted pharmacologically to revert obesity-linked adipocyte defects that drive systemic insulin resistance and type 2 diabetes. It works to identify in tandem physiologically-relevant proteins and chemical tools in order to expedite their functional annotation and therapeutic validation. diabetes, type II diabetes, compound, genetic model, metabolic disease, molecular pathway, obesity, adipocyte, insulin resistance has parent organization: Scripps Research Institute obesity, Diabetes, Type II Diabetes NIDDK DK099810;
NIDDK DK114785
Freely available, Public SCR_015847 SciCrunch Registry 2026-11-07 12:01:44 0
Monogenic Diabetes Registry
 
Resource Report
Resource Website
Monogenic Diabetes Registry (RRID:SCR_015883) MDR, NDR, MODYR data or information resource, database, portal, project portal Research project that aims to learn more about the number of people who have monogenic diabetes, why and how it happens, and how best to treat it. Any adult or child with a known genetic cause of diabetes may join the MODY Registry. monogenic, diabetes, neonatal, mody, diabetes research, genetic disease is listed by: NIDDK Information Network (dkNET)
is listed by: Diabetes Research Centers
has parent organization: University of Chicago; Illinois; USA
Diabetes, Monogenic Diabetes, Neonatal Diabetes, MODY NIDDK Public, Diagnosed individuals may register, Freely available SCR_015883 SciCrunch Registry MODY Registry, Neonatal Diabetes Registry 2026-11-07 12:01:38 0
National Glycohemoglobin Standardization Program
 
Resource Report
Resource Website
500+ mentions
National Glycohemoglobin Standardization Program (RRID:SCR_015885) NGSP data or information resource, portal, project portal Project that aims to standardize Hemoglobin A1c test results to those of the Diabetes Control and Complications Trial (DCCT) and United Kingdom Prospective Diabetes Study (UKPDS) which established the direct relationships between HbA1c levels and outcome risks in patients with diabetes. glycohemoglobin, diabetes, dcct, ukpds, hba1c, diabetes patient, hemoglobin, a1c is listed by: NIDDK Information Network (dkNET)
is listed by: Diabetes Research Centers
Diabetes NIDDK UC4 DK096587 Public SCR_015885 SciCrunch Registry NGSP: National Glycohemoglobin Standardization Program 2026-11-07 12:01:35 932
mgatk
 
Resource Report
Resource Website
1+ mentions
mgatk (RRID:SCR_021159) data processing software, software application, software resource, software toolkit Software python-based command line interface for processing .bam files with mitochondrial reads and generating high-quality heteroplasmy estimation from sequencing data. This package places a special emphasis on mitochondrial genotypes generated from single-cell genomics data, primarily mtscATAC-seq, but is generally applicable across other assays. processing .bam files, mitochondrial reads, heteroplasmy estimation, sequencing data, mitochondrial genotypes, mtscATAC-seq NCI F31 CA232670;
NCI P01 CA206978;
NCI R01 CA208756;
NCI U10 CA180861;
NHLBI R33 HL120791;
NIDDK R01 DK103794
DOI:10.1038/s41587-020-0645-6 Free, Available for download, Freely available SCR_021159 SciCrunch Registry mitochondrial genome analysis toolkit 2026-11-07 12:01:41 4
Digestive Diseases Statistics for the United States
 
Resource Report
Resource Website
Digestive Diseases Statistics for the United States (RRID:SCR_006703) Digestive Diseases Statistics for the United States data or information resource, resource A collection of statistics about specific digestive diseases, including prevalence, mortality, care delivery and cost. epidemiology, prevalence, mortality, care delivery, cost, statistics, ambulatory care visit, hospitalization, inpatient procedure, surgical procedure is related to: NIDDK Information Network (dkNET)
has parent organization: National Digestive Diseases Information Clearinghouse
Digestive disease, Viral Hepatitis, Hepatitis B, Hepatitis A, Hepatitis C, Peptic Ulcer Disease, Pancreatitis, Liver disease, Irritable Bowel Syndrome, Ulcerative colitis, Hemorrhoid, Gastrointestinal infection, Gastroesophageal reflux disease, Gallstone, Diverticular disease, Chronic constipation, Abdominal wall hernia NIDDK nlx_152697 SCR_006703 SciCrunch Registry Digestive Diseases in the United States: Epidemiology and Impact 2026-11-07 12:02:14 0
Exon Array Browser
 
Resource Report
Resource Website
1+ mentions
Exon Array Browser (RRID:SCR_008712) Exon Array Browser data or information resource, database, service resource Transcriptome database of acutely isolated purified astrocytes, neurons, and oligodendrocytes. Provides improved cell-type-specific markers for better understanding of neural development, function, and disease. mature mouse, forebrain, transcriptome, astrocyte, neuron, oligodendrocyte, brain development, brain function, molecular neuroanatomy resource, visualization has parent organization: Stanford University; Stanford; California NINDS R01NS045621;
NEI R01EY10257;
NEI EY07033;
Medical Scientist Training Program Grant MSTP GM07365;
Australian National Health and Medical Research Council CJ Martin Fellowship 400438;
NIDDK DK54388;
NCI CA095030
PMID:18171944 Free, Freely available nlx_143565 SCR_008712 SciCrunch Registry 2026-11-07 12:03:10 1
Acute Liver Failure Study Group
 
Resource Report
Resource Website
Acute Liver Failure Study Group (RRID:SCR_001463) ALFSG biomaterial supply resource, material resource Clinical research network for gathering prospective data and bio-samples on acute liver failure in adults since 1998. Clinical histories and laboratory and outcome data are available. Sample types include serum, plasma, urine, DNA, and liver tissue. clinical network, research network, adult acute liver failure is listed by: One Mind Biospecimen Bank Listing
is listed by: NIDDK Information Network (dkNET)
is related to: Pediatric Acute Liver Failure Study
has parent organization: University of Texas Southwestern Medical Center; Texas; USA
Acute liver failure, Acute liver injury NIDDK 2U01DK058369 PMID:19524577 Free, Freely Available nlx_152690 http://www8.utsouthwestern.edu/utsw/cda/dept25203/files/89624.html SCR_001463 SciCrunch Registry Acute Liver Failure Study Group (ALFSG), UT Southwestern Acute Liver Failure Study Group, Adult Acute Liver Failure Study Group 2026-11-07 12:03:25 0
Nuclear Receptor Signaling Atlas
 
Resource Report
Resource Website
100+ mentions
Nuclear Receptor Signaling Atlas (RRID:SCR_003287) NURSA biomaterial supply resource, material resource THIS RESOURCE IS NO LONGER IN SERVICE.Documented on February 25, 2022.Software tool as knowledge environment resource that accrues, develops, and communicates information that advances understanding of structure, function, and role in disease of nuclear receptors (NRs) and coregulators. It specifically seeks to elucidate roles played by NRs and coregulators in metabolism and development of metabolic disorders. Includes large validated data sets, access to reagents, new findings, library of annotated prior publications in field, and journal covering reviews and techniques.As of March 20, 2020, NURSA is succeeded by the Signaling Pathways Project (SPP). nuclear receptor, coregulator, metabolism, metabolic disorder, type 2 diabetes, obesity, osteoporosis, lipid dysregulation, cardiovascular disease, oncology, regenerative medicine, environmental agent, genomics, proteomics, reagent, ligand, microarray, gene expression, data set, data analysis service, nuclear receptor signaling, signaling, high through put screening, receptor, ligand, journal, molecule, affinity purification, q-pcr, chip-chip, animal model, antibody, cell line, primer, transcriptomine, clinical trial, disease, drug, data set is used by: NIF Data Federation
is used by: NIDDK Information Network (dkNET)
is recommended by: National Library of Medicine
lists: NURSA Transcriptomine
lists: STRING
lists: Nuclear Receptor Cistrome
is listed by: NIH Data Sharing Repositories
is listed by: NIDDK Research Resources
is listed by: NIDDK Information Network (dkNET)
is related to: dkCOIN
is related to: Integrated Manually Extracted Annotation
has parent organization: Baylor College of Medicine; Houston; Texas
Metabolic disorder, Type 2 diabetes mellitus, Obesity, Osteoporosis, Lipid dysregulation, Cardiovascular disease, Diabetes, Cancer NHLBI ;
NICHD ;
NIDDK DK097748;
NIEHS
DOI:10.1101/401729 Free, Freely available nif-0000-03208 https://dknet.org/about/NURSA_Archive http://www.nursa.org SCR_003287 SciCrunch Registry NURSA - Nuclear Receptor Signaling Atlas, NURSA - The Nuclear Receptor Signaling Atlas 2026-11-07 12:03:34 135
Chronic Renal Insufficiency Cohort Study
 
Resource Report
Resource Website
1+ mentions
Chronic Renal Insufficiency Cohort Study (RRID:SCR_009016) CRIC Study, CRIC biomaterial supply resource, material resource A prospective observational national cohort study poised to make fundamental insights into the epidemiology, management, and outcomes of chronic kidney disease (CKD) in adults with intended long-term follow up. The major goals of the CRIC Study are to answer two important questions: * Why does kidney disease get worse in some people, but not in others? * Why do persons with kidney disease commonly experience heart disease and stroke? The CRIC Scientific and Data Coordinating Center at Penn receives data and provides ongoing support for a number of Ancillary Studies approved by the CRIC Cohort utilizing both data collected about CRIC study participants as well as their biological samples. The CRIC Study has enrolled over 3900 men and women with CKD from 13 recruitment sites throughout the country. Following this group of individuals over the past 10 years has contributed to the knowledge of kidney disease, its treatment, and preventing its complications. The NIDDKwill be extending the study for an additional 5 years, through 2018. An extensive set of study data is collected from CRIC Study participants. With varying frequency, data are collected in the domains of medical history, physical measures, psychometrics and behaviors, biomarkers, genomics/metabolomics, as well as renal, cardiovascular and other outcomes. Measurements include creatinine clearance and iothalamate measured glomerular filtration rate. Cardiovascular measures include blood pressure, ECG, ABI, ECHO, and EBCT. Clinical CV outcomes include MI, ischemic heart disease-related death, acute coronary syndromes, congestive heart failure, cerebrovascular disease, peripheral vascular disease, and composite outcomes. The CRIC Study has delivered in excess of 150,000 bio-samples and a dataset characterizing all 3939 CRIC participants at the time of study entry to the NIDDKnational repository. The CRIC Study will also be delivering a dataset to NCBI''''s Database for Genotypes and Phenotypes. clinical, epidemiology, management, outcome, adult human, medical history, physical measure, psychometrics, behavior, renal, biomarker, genomics, gwas, kidney, data sharing, bibliography, observational cohort study, male, female, cardiovascular, heart, kidney, risk factor, metabolomics is listed by: One Mind Biospecimen Bank Listing
is listed by: NIDDK Information Network (dkNET)
is listed by: NIDDK Research Resources
is listed by: Diabetes Research Centers
is related to: NCBI database of Genotypes and Phenotypes (dbGap)
is related to: NIDDK Central Repository
is related to: AASK Clinical Trial and Cohort Study
has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA
Chronic kidney disease, Cardiovascular disease NIDDK Proposals to carry out ancillary studies are welcome nlx_152758 SCR_009016 SciCrunch Registry Chronic Renal Insufficiency Cohort (CRIC) Study 2026-11-07 12:03:40 2
Harvard Digestive Diseases Center Biomedical CORE D: Gnotobiotic Mice, Microbiology and Metagenomics
 
Resource Report
Resource Website
Harvard Digestive Diseases Center Biomedical CORE D: Gnotobiotic Mice, Microbiology and Metagenomics (RRID:SCR_012319) Harvard Gnotobiotic and Microbiology Core access service resource, core facility, service resource Core facility that assists investigators evaluating host microbiota and its role in normal physiology and disease. It includes a number of resources for groups studying the role of the microbiota in human health and disease. host microbiota, physiology, human health is listed by: ScienceExchange
is listed by: NIDDK Information Network (dkNET)
is related to: Harvard University Labs and Facilities
has parent organization: Harvard University; Cambridge; United States
has parent organization: Harvard Digestive Disease Center
is organization facet of: Harvard Digestive Disease Center
digestive disease NIDDK P30 DK034854 Available to the research community, Available to Harvard Medical School SciEx_11652 SCR_012319 SciCrunch Registry Harvard University Gnotobiotic and Microbiology Core, Harvard University Gnotobiotic and Microbiology Core (CHB), Harvard Gnotobiotic and Microbiology Core (CHB), Harvard Digestive Disease Center Gnotobiotics and Microbiology Core 2026-11-07 12:04:50 0
University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Diet and Physical Activity Core
 
Resource Report
Resource Website
University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Diet and Physical Activity Core (RRID:SCR_012588) UNC NORC - Diet Physical Activity and Body Composition Core access service resource, core facility, resource, service resource Core that provides diet, physical activity, or statistical analysis consultation, as well as consultation for the design and development of diet and physical activity data collection protocols. diet analysis, physical activity analysis, statistical analysis consultation, experimental design consultation, data collection consultation is listed by: ScienceExchange
is listed by: NIDDK Information Network (dkNET)
is related to: University of North Carolina at Chapel Hill Labs and Facilities
has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA
has parent organization: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center
is organization facet of: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center
Obesity NIDDK DK056350 Available to the research community SciEx_5107 SCR_012588 SciCrunch Registry University of North Carolina at Chapel Hill NORC - Diet Physical Activity and Body Composition Core, UNC Nutrition Obesity Research Center - Diet Physical Activity and Body Composition Core, UNC-Chapel Hill NORC - Diet Physical Activity and Body Composition Core, University of North Carolina at Chapel Hill Nutrition Obesity Research Center - Diet Physical Activity and Body Composition Core 2026-11-07 12:04:54 0
Einstein-Mount Sinai Diabetes Research Center Translational Research Core Facility
 
Resource Report
Resource Website
Einstein-Mount Sinai Diabetes Research Center Translational Research Core Facility (RRID:SCR_015068) access service resource, core facility, service resource Core services include consultation, technical support and training and mentoring in clinical and translational research methods that are specifically applicable to diabetes, its complications and related metabolic disorders. Personel provides expertise in first-in-human and mechanistic studies in integrative physiology, in clinical trials of diabetes and obesity, and in application of new technologies. translational research, data interpretation, diabetes research is listed by: NIDDK Information Network (dkNET)
is listed by: ABRF CoreMarketplace
has parent organization: Einstein-Mount Sinai Diabetes Research Center
is organization facet of: Einstein-Mount Sinai Diabetes Research Center
Diabetes New York Obesity Research Center ;
Center for the Study of Diabetic Complications ;
Montefiore Clinical Diabetes Center ;
NIDDK P30DK020541
Open ABRF_2861 https://coremarketplace.org/?FacilityID=2861&citation=1 http://www.einstein.yu.edu/centers/diabetes-research/research-areas/biomedical-cores/translational-research-core/ SCR_015068 SciCrunch Registry Einstein-Mount Sinai Diabetes Research Center Translational Research Core 2026-11-07 12:04:47 0
University of California San Francisco Diabetes Research Center Mouse Metabolism Core
 
Resource Report
Resource Website
University of California San Francisco Diabetes Research Center Mouse Metabolism Core (RRID:SCR_015101) access service resource, core facility, resource, service resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 10,2024. Core which provides technical support for UCSF investigators to conduct metabolic studies using a 12-chambered Comprehensive Lab Animal Monitoring System (CLAMS), an EchoMRI, and Dual energy X-ray absorptiometry, which together allow measurement of food intake, water intake, motor activities, core temperature, and body composition in live mice. It also helps to identify emerging technologies that will enhance multiple research programs and coordinates the acquisition and maintenance of those facilities. mouse metabolism, obesity, metabolic diseases is listed by: NIDDK Information Network (dkNET)
has parent organization: University of California at San Francisco; California; USA
has parent organization: University of California San Francisco Diabetes Research Center
is organization facet of: University of California San Francisco Diabetes Research Center
Diabetes NIDDK P30DK063720 THIS RESOURCE IS NO LONGER IN SERVICE http://drc.ucsf.edu/mouse-metabolism-core SCR_015101 SciCrunch Registry 2026-11-07 12:05:03 0
Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology Core Facility
 
Resource Report
Resource Website
Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology Core Facility (RRID:SCR_015069) access service resource, core facility, service resource Services provided include tissue preparation, embedding and sectioning for electron microscopy, use of electron microscope and photography of thin sections, immunogold staining for electron microscopy, preparation and incubation of samples (cells and tissues) for immunofluorescence microscopy, confocal microscopy and digital imaging. microscopy, immunofluorescence, immunogold, morphology, confocal microscopy, electron microscopy, digital imaging, is listed by: NIDDK Information Network (dkNET)
is listed by: ABRF CoreMarketplace
is organization facet of: Boston Area Diabetes Endocrinology Research Center
Diabetes NIDDK P30DK057521 Restricted ABRF_2860 https://coremarketplace.org/?FacilityID=2860&citation=1 http://www.baderc.org/cores/CBMCore.html SCR_015069 SciCrunch Registry Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology 2026-11-07 12:05:35 0
University of California San Francisco Diabetes Research Center Islet Production Core Facility
 
Resource Report
Resource Website
University of California San Francisco Diabetes Research Center Islet Production Core Facility (RRID:SCR_015106) access service resource, core facility, service resource Core that enables clinical and basic research that analyzes the function of isolated pancreatic islets. It coordinates and delivers purified human islets to investigators when research need matches the availability of a human pancreas. islet isolation, pancreatic islets has parent organization: University of California at San Francisco; California; USA
has parent organization: University of California San Francisco Diabetes Research Center
is organization facet of: University of California San Francisco Diabetes Research Center
Diabetes NIDDK P30DK063720 Restricted http://drc.ucsf.edu/islet-production-core SCR_015106 SciCrunch Registry 2026-11-07 12:05:26 0
University of California San Francisco Diabetes Research Center Microscopy Core Facility
 
Resource Report
Resource Website
University of California San Francisco Diabetes Research Center Microscopy Core Facility (RRID:SCR_015103) access service resource, core facility, service resource Core that consolidates, enhances and disseminates Diabetes Center resources and expertise in tissue and cell imaging technologies. Confocal fluorescence, widefield fluorescence, high throughput fluorescence and brightfield microscopes are available directly within the DRC Microscopy Core. Image quantification and analysis is performed at dedicated workstations. tissue imaging, cell imaging, fluorescence, brightfield microscopes, microscopy is listed by: NIDDK Information Network (dkNET)
has parent organization: University of California at San Francisco; California; USA
has parent organization: University of California San Francisco Diabetes Research Center
is organization facet of: University of California San Francisco Diabetes Research Center
Diabetes NIDDK P30DK063720 Restricted http://drc.ucsf.edu/microscopy-core SCR_015103 SciCrunch Registry , DRC Microscopy Core 2026-11-07 12:04:48 0
University of California San Francisco Diabetes Research Center Lentiviral RNAi Core Facility
 
Resource Report
Resource Website
University of California San Francisco Diabetes Research Center Lentiviral RNAi Core Facility (RRID:SCR_015104) access service resource, core facility, service resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 5,2024. Core that provides reagents, equipment, training, supervision, and monitoring of investigators wishing to ensure the proper compliance with biosafety containment required for lentiviral-based research, lentiviral preparation services for investigators, and education on RNAi experimentation, through the lentiviral core website, and through protocols available at the facility. lentivirus, RNA interference, short hairpin RNAs, shRNA is listed by: NIDDK Information Network (dkNET)
has parent organization: University of California at San Francisco; California; USA
has parent organization: University of California San Francisco Diabetes Research Center
is organization facet of: University of California San Francisco Diabetes Research Center
Diabetes NIDDK P30DK063720 THIS RESOURCE IS NO LONGER IN SERVICE SCR_015104 SciCrunch Registry 2026-11-07 12:05:36 0
Boston Area Diabetes Endocrinology Research Center Molecular Biology
 
Resource Report
Resource Website
Boston Area Diabetes Endocrinology Research Center Molecular Biology (RRID:SCR_015079) access service resource, core facility, service resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 24,2024. Core that provides services for DNA sequencing and oligonucleotide synthesis, as well as support for projects that require research laboratory automation, such as siRNA screens and transcript abundance profiling. It also offers experimental design and advice for automation and high throughput screening of siRNA collections based on the Ambion siRNA collection. DNA sequencing, siRNA collection, research laboratory automation is listed by: NIDDK Information Network (dkNET)
has parent organization: Boston Area Diabetes Endocrinology Research Center
is organization facet of: Boston Area Diabetes Endocrinology Research Center
Diabetes NIDDK P30DK057521 THIS RESOURCE IS NO LONGER IN SERVICE SCR_015079 SciCrunch Registry 2026-11-07 12:04:47 0

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