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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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National Snow and Ice Data Center Resource Report Resource Website 50+ mentions |
National Snow and Ice Data Center (RRID:SCR_002220) | NSIDC | data or information resource, data repository, database, image collection, service resource, storage service resource | National data center / repository for snow and ice data including snow, ice, glaciers, frozen ground, and climate interactions that make up Earth's cryosphere. The center manages and distributes scientific data, creates tools for data access, supports data users, performs scientific research, and educates the public about the cryosphere. Users may explore the Earth's frozen places in the collection of photographs and images. Photographs from field research trips, images captured by satellites of the changing cryosphere, and photos and images are available. Data sets are organized into the following groups: sea ice, frozen ground, snow cover, snow hydrology, glaciers and ice sheets, arctic people. | polar, snow, ice, climate, photo, visualization, sea ice, arctic, meteorology, frozen, antarctica, arctic region, sea ice, satellite, ice sheet, global warming, glacier, frozen ground, cryosphere, climatology, arctic people, snow cover, snow hydrology, catalog, data set, interaction, FASEB list |
is listed by: CINERGI is listed by: re3data.org is listed by: DataCite is listed by: FAIRsharing has parent organization: University of Colorado Boulder; Colorado; USA is parent organization of: Antarctic Glaciological Data Center is parent organization of: ACADIS Gateway |
NASA ; NSF ; NOAA |
PMID:32116128 | Public, Unless specifically stated that the information has limitations for its use, Acknowledgement requested, Free, Photos come from a variety of sources, And may have different copyright restrictions and credits. | DOI:10.7265, nlx_154742, DOI:10.25504/FAIRsharing.k9vqye, DOI:10.17616/R3HP4V, DOI:10.5067/ | https://doi.org/10.17616/R31NJMJB, https://doi.org/10.17616/r3HP4V, https://doi.org/10.7265/, https://dx.doi.org/10.7265/, https://fairsharing.org/10.25504/FAIRsharing.k9vqye, https://doi.org/10.5067/, https://dx.doi.org/10.5067/ | SCR_002220 | SciCrunch Registry | National Snow & Ice Data Center | 2026-10-31 12:13:03 | 53 | ||||
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i2b2 Research Data Warehouse Resource Report Resource Website 1+ mentions |
i2b2 Research Data Warehouse (RRID:SCR_013276) | i2b2 | data or information resource, data repository, database, service resource, storage service resource | A data warehouse that integrates information on patients from multiple sources and consists of patient information from all the visits to Cincinnati Children''''s between 2003 and 2007. This information includes demographics (age, gender, race), diagnoses (ICD-9), procedures, medications and lab results. They have included extracts from Epic, DocSite, and the new Cerner laboratory system and will eventually load public data sources, data from the different divisions or research cores (such as images or genetic data), as well as the research databases from individual groups or investigators. This information is aggregated, cleaned and de-identified. Once this process is complete, it is presented to the user, who will then be able to query the data. The warehouse is best suited for tasks like cohort identification, hypothesis generation and retrospective data analysis. Automated software tools will facilitate some of these functions, while others will require more of a manual process. The initial software tools will be focused around cohort identification. They have developed a set of web-based tools that allow the user to query the warehouse after logging in. The only people able to see your data are those to whom you grant authorization. If the information can be provided to the general research community, they will add it to the warehouse. If it cannot, they will mark it so that only you (or others in your group with proper approval) can access it. | biomedical, computing, clinical data, platform, clinical, translational research, data sharing, framework, data analysis service, service resource, aging |
is listed by: Biositemaps is related to: SHRINE is related to: National Centers for Biomedical Computing |
NIH | Must login., Work with investigators on a case-by-case basis., The community can contribute to this resource | nif-0000-33024 | SCR_013276 | SciCrunch Registry | Informatics for Integrating Biology and the Bedside, Informatics for Integrating Biology and the Bedside Research Data Warehouse | 2026-10-31 12:15:55 | 1 | ||||||
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Pennsieve Data Management Platform Resource Report Resource Website 1+ mentions |
Pennsieve Data Management Platform (RRID:SCR_018999) | data repository, service resource, storage service resource | Open platform that accepts data from peripheral nervous system data. It was previously the Blackfynn data platform. Pennsieve provides advanced functionality to organize files and complex metadata describing datasets and allows users to interact, search, and analyze these data through web application or programmatically using Python client. Provides end-to-end solution for publishing datasets through Pennsieve Discover, assigning DOIs and ensuring that published data becomes available to larger academic community in sustainable and FAIR manner. | Organize files and metadata, data analysis, dataset publishing, assigning DOI, FAIR data, collaborative research, SPARC |
is used by: SPARC Portal is related to: Blackfynn Discover is organization facet of: SPARC Portal |
Registration required | https://www.blackfynn.com/academia/ | SCR_018999 | SciCrunch Registry | Blackfynn Data Management Platform | 2026-10-31 12:18:42 | 5 | ||||||||
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Distributed Archives for Neurophysiology Data Integration Resource Report Resource Website 50+ mentions |
Distributed Archives for Neurophysiology Data Integration (RRID:SCR_017571) | DANDI | data repository, service resource, storage service resource | Free, cloud-based platform for publishing, sharing, and processing standardized neurophysiology data, primarily using the Neurodata Without Borders (NWB) format. Supported by the BRAIN Initiative, it enables researchers to collaborate, reuse datasets, and adhere to FAIR data principles. | publishing data, sharing data, processing data, neurophysiology data, BRAIN Initiative, |
is used by: BICCN is recommended by: BRAIN Initiative is listed by: DataCite is listed by: FAIRsharing is related to: BRAIN Initiative is related to: Allen Institute for Brain Science is related to: NeuroSift is related to: Ecosystem for Multi-modal Brain-behavior Experimentation and Research |
NIH R24 MH117295 | Free, Freely available | DOI:10.25504/FAIRsharing.f2c119, DOI:10.48324, r3d100013638 | https://doi.org/10.48324/, https://dx.doi.org/10.48324/, https://fairsharing.org/10.25504/FAIRsharing.f2c119, https://doi.org/10.17616/R31NJN0M | SCR_017571 | SciCrunch Registry | 2026-10-31 12:16:53 | 58 | ||||||
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Proteomic Data Commons Resource Report Resource Website 100+ mentions |
Proteomic Data Commons (RRID:SCR_018273) | PDC | analysis service resource, data or information resource, data repository, database, production service resource, service resource, storage service resource | Portal to make cancer related proteomic datasets easily accessible to public. Facilitates multiomic integration in support of precision medicine through interoperability with other resources. Developed to advance our understanding of how proteins help to shape risk, diagnosis, development, progression, and treatment of cancer. One of several repositories within NCI Cancer Research Data Commons which enables researchers to link proteomic data with other data sets (e.g., genomic and imaging data) and to submit, collect, analyze, store, and share data throughout cancer data ecosystem. PDC provides access to highly curated and standardized biospecimen, clinical, and proteomic data, intuitive interface to filter, query, search, visualize and download data and metadata. Provides common data harmonization pipeline to uniformly analyze all PDC data and provides advanced visualization of quantitative information. Cloud based (Amazon Web Services) infrastructure facilitates interoperability with AWS based data analysis tools and platforms natively. Application programming interface (API) provides cloud-agnostic data access and allows third parties to extend functionality beyond PDC. Structured workspace that serves as private user data store and also data submission portal. Distributes controlled access data, such as patient-specific protein fasta sequence databases, with dbGaP authorization and eRA Commons authentication. | Cancer, proteomic, data, precision medicine, diagnosis, treatment, analysis, biospeciment, clinical data, metadata |
is related to: Cancer Research Data Commons has parent organization: National Cancer Institute |
cancer | Restricted | SCR_018273 | SciCrunch Registry | 2026-10-31 12:16:59 | 102 | ||||||||
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Open Data Commons for Traumatic Brain Injury Resource Report Resource Website 10+ mentions |
Open Data Commons for Traumatic Brain Injury (RRID:SCR_021736) | ODC-TBI | data or information resource, data repository, disease-related portal, portal, service resource, storage service resource, topical portal | Software as cloud based community driven repository to store, share, and publish traumatic brain injury research data. Aims to increase transparency with individual level data, enhance collaboration, facilitate advanced analytics, and conform to increasing mandates by funders and publishers to make data accessible. Members of ODC-TBI have access to private digital lab space managed by PI or multi-PIs for dataset storage and sharing. PIs can share their labs’ datasets with registered members of ODC-TBI community and make their datasets public and citable. ODC-TBI implements stewardship principles that scientific data be made FAIR (Findable, Accessible, Interoperable and Reusable). | Data Commons, traumatic brain injury data, traumatic brain injury, brain injury data, FAIR |
uses: DataCite has parent organization: University of California at San Diego; California; USA has parent organization: FAIR Data Informatics Laboratory is organization facet of: PRE Clinical Interagency Research Resource TBI |
Restricted | r3d100014124 | https://doi.org/10.34945/, https://dx.doi.org/10.34945/, https://doi.org/10.17616/R31NJNE4 | SCR_021736 | SciCrunch Registry | 2026-10-31 12:18:24 | 38 | |||||||
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ICGC Data Portal Resource Report Resource Website 500+ mentions |
ICGC Data Portal (RRID:SCR_021722) | data or information resource, data repository, disease-related portal, portal, service resource, storage service resource, topical portal | Portal provides tools for visualizing, querying, and downloading cancer data, which is released on quarterly schedule. | Cancer data, visualizing cancer data, querying cancer data, downloading cancer data, cancer | Cancer | Restricted | SCR_021722 | SciCrunch Registry | International Cancer Genome Consortium Data Portal | 2026-10-31 12:18:19 | 891 | |||||||||
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Polar Data Catalogue Resource Report Resource Website 1+ mentions |
Polar Data Catalogue (RRID:SCR_023131) | data repository, service resource, storage service resource | Repository of metadata and data that describes and provides access to diverse data sets generated by Arctic and Antarctic researchers. The metadata records follow ISO 19115 and Federal Geographic Data Committee (FGDC) standard formats to provide exchange with other data centres. The records cover a wide range of disciplines from natural sciences and policy, to health and social sciences. The PDC Geospatial Search tool is available to the public and researchers alike and allows searching data using a mapping interface and other parameters. | Arctic and Antarctic researcher data, Federal Geographic Data Committee standard format, |
is listed by: DataCite is listed by: re3data.org |
Free, Freely available | DOI:10.17616/R3QK86, r3d100010953, DOI:10.5884 | https://doi.org/10.5884, https://dx.doi.org/10.5884, http://doi.org/10.17616/R3QK86, https://doi.org/10.17616/R3QK86 | SCR_023131 | SciCrunch Registry | ArcticNet | 2026-10-31 12:18:46 | 1 | |||||||
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Data Sharing for Demographics Research (DSDR) Resource Report Resource Website |
Data Sharing for Demographics Research (DSDR) (RRID:SCR_016310) | data repository, service resource, storage service resource | DSDR disseminates, archives, and preserves data for population-based studies. By providing access to data on topics including mortality and health, fertility, family and household structure, and children and youth, DSDR aims to facilitate demographic research. | NICHD | r3d100010256 | https://doi.org/10.17616/R36K6S | SCR_016310 | SciCrunch Registry | , Data Sharing For Demographic Research, DSDR | 2026-10-31 12:16:34 | 0 | |||||||||
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Research Data Management Platform Resource Report Resource Website 1+ mentions |
Research Data Management Platform (RRID:SCR_016268) | RDMP | data management software, data or information resource, data repository, service resource, software application, software resource, software toolkit, storage service resource | Software toolkit which automates the loading, storage, linkage and provision of data sets. It also cleans, transforms and documents provenance meta-data and domain knowledge to make data sets “research ready”. | metadata, reproducibility, anonymization, security, audit, clinical, dataset, translational, research, data, management, catalogue, health, informatics, linkage | has parent organization: University of Dundee; Scotland; United Kingdom | EU Horizon 2020 633983; Medical Research Council (MRC) MR/M501633/1; Wellcome Trust WT086113 |
Free, Available for download | https://hic.dundee.ac.uk/Installers/RDMP/Stable/ | SCR_016268 | SciCrunch Registry | 2026-10-31 12:16:42 | 2 | |||||||
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Data Archive BRAIN Initiative Resource Report Resource Website 10+ mentions |
Data Archive BRAIN Initiative (RRID:SCR_017114) | DABI | data or information resource, data repository, service resource, storage service resource | Organize, Store, Disseminate, Analyze and Visualize Invasive Neurophysiology Data. Shared archive and resource for human invasive neurophysiology data that have been established by Brain Research through Advancing Innovative Neurotechnologies (BRAIN) Initiative along with software tools for data uploading, visualization and analysis. Users can view and query datasets through online interface but cannot access raw data. Platform utilizes centralized and federated model. Investigators may upload data to central archive or house it themselves. | shared, archive, human, invasive, neurophysiology, data, brain, neurotechnology, dataset, BRAIN Initiative |
is recommended by: National Library of Medicine is recommended by: BRAIN Initiative has parent organization: University of Southern California; Los Angeles; USA has parent organization: BRAIN Initiative |
BRAIN Initiative | Restricted | SCR_017114 | SciCrunch Registry | Data Archive Brain Initiative, DABI | 2026-10-31 12:16:46 | 17 | |||||||
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electronic Data Archive Library Resource Report Resource Website 1+ mentions |
electronic Data Archive Library (RRID:SCR_019017) | access service resource, data management software, data or information resource, data repository, service resource, software application, software resource, storage service resource | Software tool as Java based framework to store, share and publish research data. Free software infrastructure to FAIRly maintain and publish in-house stored research data. Used for version tracking, metadata management, information retrieval, journal and founding agency proven registration of persistent identifiers (DOI), embedded HTTP(S) server for public data access, access as network file system, and scalable storage backend. | Data storage, data sharing, version tracking, metadata management, information retrieval | has parent organization: Leibniz Institute of Plant Genetics and Crop Plant Research; Saxony-Anhalt; Germany | European Commission ; German Federal Ministry of Education and Research |
PMID:24958009 | Free, Available for download, Freely available | SCR_019017 | SciCrunch Registry | e!DAL | 2026-10-31 12:17:11 | 5 | |||||||
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NCI Imaging Data Commons Resource Report Resource Website 1+ mentions |
NCI Imaging Data Commons (RRID:SCR_019127) | NCI IDC | data or information resource, data repository, disease-related portal, portal, service resource, storage service resource, topical portal | Portal for finding and analyzing cancer imaging data. Part of Cancer Research Data Commons to support cancer imaging research. Provides cloud based access to medical imaging data and library of analytical tools and workflows to share, analyze, and visualize multi modal imaging data from both clinical and basic cancer research studies. | Imaging Data Commons Data, cloud based data analysis, FAIR data, cancer imaging data, metadata |
uses: DICOM standard is related to: FAIRsharing is related to: Cancer Imaging Archive (TCIA) is related to: Cancer Research Data Commons |
Cancer | NIH | Free, Freely available | r3d100014074 | https://doi.org/10.17616/R31NJNCQ | SCR_019127 | SciCrunch Registry | National Cancer Institute Imaging Data Commons | 2026-10-31 12:17:13 | 9 | ||||
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Cancer Research Data Commons Resource Report Resource Website 10+ mentions |
Cancer Research Data Commons (RRID:SCR_019128) | CRDC | data or information resource, data repository, disease-related portal, portal, service resource, storage service resource, topical portal | Cloud based data science infrastructure that provides secure access to cancer research data from NCI programs and key external cancer programs. Serves as coordinated resource for public data sharing of NCI funded programs. Users can explore and use analytical and visualization tools for data analysis. Enables to search and aggregate data across repositories including Cancer Data Service, Clinical Trial Data Commons, Genomic Data Commons, Imaging Data Commons, Integrated Canine Data Commons, Proteomic Data Commons. |
is related to: NCI Imaging Data Commons is related to: FAIRsharing is related to: The Cancer Genome Atlas is related to: Cancer Cell Line Encyclopedia is related to: Genomic Data Commons Data Portal (GDC Data Portal) is related to: Proteomic Data Commons |
Cancer | NIH | Restricted | SCR_019128 | SciCrunch Registry | NCI Cancer Research Data Commons, NCI CRDC | 2026-10-31 12:17:13 | 13 | |||||||
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SPARC Data Standard Resource Report Resource Website |
SPARC Data Standard (RRID:SCR_027028) | data or information resource, data repository, narrative resource, service resource, standard specification, storage service resource | SPARC data structure is consistent file structure and naming convention, based on the Brain Imaging Data Structure (BIDS) to ensure that the diverse types of data in SPARC is organized in similar manner. | SPARC data structure, data standard, consistent file structure, consistent naming convention, Brain Imaging Data Structure, BIDs, SPARC, science data repository, |
uses: Brain Imaging Data Structure (BIDs) works with: SPARC Portal |
Free, Freely available, | SCR_027028 | SciCrunch Registry | 2026-10-31 12:24:16 | 0 | ||||||||||
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National Neighborhood Data Archive Resource Report Resource Website 1+ mentions |
National Neighborhood Data Archive (RRID:SCR_027451) | data repository, service resource, storage service resource | Open data repository to facilitate research on the relationship between neighborhoods and health, especially within the context of large federally funded surveys and cohort studies. Used to explore topics of interest to neighborhoods and communities. NaNDA measures can be readily linked to survey data, cohort studies, electronic medical records, or other microdata, via geographic identifiers, or combined and explored on their own. NaNDA datasets are created by researchers in the Social Environment and Health program at the University of Michigan Institute for Social Research. | data archive, physical, economic, demographic, social environment, spatial scale, data | is related to: University of Michigan; Ann Arbor; USA | NIDILRR 90RTHF0001; NIMHD U01NR020556 |
Free, Freely available | SCR_027451 | SciCrunch Registry | 2026-10-31 12:24:33 | 1 | |||||||||
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Protein Circular Dichroism Data Bank (PCDDB) Resource Report Resource Website 1+ mentions |
Protein Circular Dichroism Data Bank (PCDDB) (RRID:SCR_017428) | PCDDB | data or information resource, data repository, database, service resource, storage service resource | Public repository for archiving circular dichroism spectroscopic data and associated bioinformatics and experimental metadata. For authors to deposit experimental data as well as detailed information on methods and calculations associated with published work. Includes links for each entry to bioinformatics databases. Data are freely available to accessors either as single files or as complete data bank downloads. |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has parent organization: Birkbeck University of London; London; United Kingdom has parent organization: Queen Mary University of London; London; United Kingdom |
International Union of Pure and Applied Chemistry ; U.K. Biotechnology and Biological Research Council |
DOI:10.1093/nar/gkw796 | Restricted | r3d100010890 | http://pcddb.cryst.bbk.ac.uk/, https://doi.org/10.17616/R36W5H | SCR_017428 | SciCrunch Registry | Protein Circular Dichroism Data Bank, PCDDB, Protein Circular Dichroism Data Bank (PCDDB) | 2026-10-31 12:16:51 | 5 | |||||
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Koch Institute at MIT Data Science and Multimodal Integration Core Facility Resource Report Resource Website |
Koch Institute at MIT Data Science and Multimodal Integration Core Facility (RRID:SCR_017894) | access service resource, core facility, service resource | Core provides central hub to help leverage bioinformatics and data science methods in research projects. Services include Transcriptomics: bulk RNA-Seq, single-cell RNA-Seq, and spatial RNA-Seq; Genomics: SNP, structural variants (SV), and copy number variation (CNV) analyses; Regulatory genomics: ChIP-Seq, ATAC-Seq, CUT&RUN, and Hi-C; Functional genomics: CRISPR-based loss-of-function screens;Image and metadata analysis: AI/ML-based approaches including knowledge graphs. Offers training, education, collaboration, consultation,custom guidance on study design and analysis approaches. Provides classroom and custom training sessions on computational, data science, bioinformatics topics, tailored workshops for requested specialized topics. Offers technical infrastructure and support, computing resource optimization and facilitation, bioinformatics software deployment (conda environments and Docker containers), version control and reproducible science (Git repositories), data management support and submission to public repositories. | Data Science, Bioinformatics, support, training, data, analysis, storage, service, core, ABRF, USEDit |
is listed by: ABRF CoreMarketplace has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
Restricted | SCR_017155, ABRF_769 | https://coremarketplace.org/?FacilityID=769 | SCR_017894 | SciCrunch Registry | Barbara K. Ostrom Bioinformatics Facility, Data Science & Multimodal Integration Core (DSMI), The Barbara K. Ostrom (1978) Bioinformatics and Computing Facility, Bioinformatics and Computing Core | 2026-10-31 12:22:53 | 0 | |||||||
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Global Initiative on Sharing All Influenza Data Resource Report Resource Website 1000+ mentions |
Global Initiative on Sharing All Influenza Data (RRID:SCR_018251) | GISAID | data or information resource, database, disease-related portal, portal, topical portal | Portal to share hCoV-19 genome sequences. Collection of genome sequences and related clinical and epidemiological data associated with coronavirus hCoV-19. Global repository of SARS-CoV-2 genomes. Initiative involves public-private-partnerships between Freunde of GISAID and governments of Federal Republic of Germany, Singapore and United States of America, with support from private and corporate philanthropy.International database of hCoV-19 genome sequences and related clinical and epidemiological data. Resource for influenza and hCoV-19 data. | hCoV19, hCoV-19 genome sequence, data, coronavirus, SARS coronavirus, Coronavirus, genome, genome database, influenza, SARS-CoV infection, SARS-CoV-2, COVID-19 |
lists: Health Data Research UK COVID-19 Initiative is listed by: Data and Computational Resources to Address COVID-19 is related to: SARS-CoV-2 mutation effects and 3D structure prediction from sequence covariation works with: Nextstrain |
CoV19, COVID19, COVID-19 | PMID:28382917 | Restricted | SCR_018279, r3d100010126, SCR_018318 | https://doi.org/10.17616/R3Q59F | SCR_018251 | SciCrunch Registry | 2026-10-31 12:17:03 | 2596 | |||||
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DE-ID Data Corp Resource Report Resource Website 1+ mentions |
DE-ID Data Corp (RRID:SCR_008668) | software resource | A commercial organization that suppplies software which creates separate HIPAA-compliant repositories of de-identified patient records and reports. This software allows clinicians, researchers, and administrative leadership to safely access, search, share, and analyze de-identified patient-level data. DE-ID can be acquired as stand-alone tool or integrated with data networks or clinical information systems. | clinical, data, patient protection, surgical report | nif-0000-33387 | SCR_008668 | SciCrunch Registry | DE-ID Data Corp | 2026-10-31 12:14:51 | 1 |
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