Searching across hundreds of databases

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

25,005 Results - per page

Show More Columns | Download Top 1000 Results

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Functional Image Processing software Computational Olio
 
Resource Report
Resource Website
1+ mentions
Functional Image Processing software Computational Olio (RRID:SCR_001689) FIASCO image analysis software, software application, image processing software, data processing software, software resource Collection of software designed to analyze fMRI data using a series of processing steps. The input is the raw data, and the outputs are statistical brain maps showing regions of neural activation. Corrections for different systematic variations in the k-space (raw) data obtained from an fMRI session (head motion, ghosting, etc) are performed first. The image is then reconstructed (using the Fast Fourier Transform) and statistical analyses run. The user has a great deal of flexibility in choosing which corrections and statistics are executed. FIASCO emphasizes correct statistical models, for example for group comparisons. fmri, brain, neural activation, neuroimaging, function has parent organization: Carnegie Mellon University; Pennsylvania; USA PMID:22348882 nif-0000-00298 SCR_001689 2025-04-09 11:47:35 5
CNVrd2
 
Resource Report
Resource Website
1+ mentions
CNVrd2 (RRID:SCR_001723) software resource A software package that uses next-generation sequencing data to measure human gene copy number for multiple samples, indentify SNPs tagging copy number variants and detect copy number polymorphic genomic regions. standalone software, illumina, unix/linux, mac os x, windows, r, clustering., copy number variation, coverage, linkage disequilibrium, snp, sequencing is listed by: OMICtools
has parent organization: Bioconductor
PMID:23646200 GNU General Public License, v2 OMICS_03924 http://www.bioconductor.org/packages/release/bioc/html/CNVrd2.html
https://github.com/hoangtn/CNVrd2
SCR_001723 CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data 2025-04-09 11:47:39 5
TaLasso
 
Resource Report
Resource Website
1+ mentions
TaLasso (RRID:SCR_001726) TaLasso data analysis service, service resource, software resource, production service resource, analysis service resource Tool for quantification of human miRNA-mRNA Interactions. TaLasso is also available as Matlab or R code. mirna, mrna, matlab, r, gene expression, gene is listed by: OMICtools
has parent organization: Autonomous University of Madrid; Madrid; Spain
PMID:22348024 Acknowledgement requested OMICS_00417 SCR_001726 2025-04-09 11:47:39 1
Biological Pathways Exchange
 
Resource Report
Resource Website
50+ mentions
Biological Pathways Exchange (RRID:SCR_001681) project portal, controlled vocabulary, data or information resource, portal, ontology Community standard for pathway data sharing. Standard language that aims to enable integration, exchange, visualization and analysis of biological pathway data. Supports data exchange between pathway data groups and thus reduces complexity of interchange between data formats by providing accepted standard format for pathway data. Open and collaborative effort by community of researchers, software developers, and institutions. BioPAX is defined in OWL DL and is represented in RDF/XML format.Uses W3C standard Web Ontology Language, OWL. Standard language, community standard, pathway data sharing, biological pathway data, data exchange, W3C standard, Web Ontology Language, OWL, is listed by: BioPortal
is related to: cPath
is related to: Biofactoid
is related to: PathGuide: the pathway resource list
U.S. Department of Energy Workshop ;
NHGRI P41HG004118
PMID:20829833 SCR_009881, nlx_157327, nif-0000-10171 http://purl.bioontology.org/ontology/BP SCR_001681 BioPAX, BioPAX: Biological Pathways Exchange 2025-04-09 11:47:35 84
Brain Dynamics Centre
 
Resource Report
Resource Website
Brain Dynamics Centre (RRID:SCR_001685) topical portal, portal, data or information resource, database The Brain Dynamics Centre (BDC) is a network of centers and units. It achieves a unique exploration of the healthy brain and disorders of brain function. It translates these insights into new ways to tailor treatments to the individual. There approach is: "integrative neuroscience" - bringing together clinical observations, theory, and modern imaging technologies. And it's theoretical framework derives from linking physiology, psychology and evolution. Additionally, BDC also actively researches ADHD and conduct disorder, stress and trauma-related problems, depression and anxiety, anorexia nervosa, psychosis (including early onset) and conversion disorders. The research facilities DBC include assessment, rooms, two cognition-brain function laboratories, genotyping and an MRI Suite with 1.5 and 3T GE systems. BDC is the coordinating site for an international network - BRAINnet. It has over 180 members, and coordinates access to the first standardized database on the human brain for scientific purposes: Brain Resource International Database. evolution, function, genetics, adhd, anorexia nervosa, anxiety, behavior, brain, brain disorder, brain imaging, clinical, cognition, conduct disorder, conservation disorder, database, depression, disorder, genotyping, healthy, human, keywords: brain, laboratory, mental illness, mri, neuroscience, onset, physiology, post traumatic stress disorder (ptsd), psychology, psychosis, research, stress, technology, trauma, treatment nif-0000-10177 SCR_001685 BDC 2025-04-09 11:47:35 0
ezDICOM
 
Resource Report
Resource Website
1+ mentions
ezDICOM (RRID:SCR_001686) image analysis software, standalone software, software application, image processing software, data processing software, software resource Software designed to display most medical images, including MRI, CT, X-ray, and ultrasound. All versions of ezDICOM can automatically detect the format of a medical image and display it on the screen. The software is easy to use, mature, and can view a wide range of medical images including proprietary formats as well as images in the DICOM standard. The software will also automatically recognize and display Analyze, GE (LX, Genesis), Interfile, Siemens (Magnetom, Somatom) and NEMA images. image processing, image analysis, open source, standalone software is related to: DICOM standard Public, Free nif-0000-00296 SCR_001686 ezDICOM DICOM Viewer 2025-04-09 11:47:35 3
sSeq
 
Resource Report
Resource Website
10+ mentions
sSeq (RRID:SCR_001719) sSeq software resource Software package to discover the genes that are differentially expressed between two conditions in RNA-seq experiments. Gene expression is measured in counts of transcripts and modeled with the Negative Binomial (NB) distribution using a shrinkage approach for dispersion estimation. The method of moment (MM) estimates for dispersion are shrunk towards an estimated target, which minimizes the average squared difference between the shrinkage estimates and the initial estimates. The exact per-gene probability under the NB model is calculated, and used to test the hypothesis that the expected expression of a gene in two conditions identically follow a NB distribution. rna-seq, differential expression is listed by: OMICtools
has parent organization: Bioconductor
PMID:23589650 GNU General Public License, v3 or newer OMICS_01962 SCR_001719 sSeq - Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size 2025-04-09 11:47:38 41
Proteome 2D-PAGE Database
 
Resource Report
Resource Website
1+ mentions
Proteome 2D-PAGE Database (RRID:SCR_001678) 2D-PAGE storage service resource, data or information resource, service resource, database, software resource, data repository The Proteome 2D-PAGE Database system for microbial research is a curated database for storing and investigating proteomics data. Software tools are available and for data submission, please contact the Database Curator. Established at the Max Plank Institution for Infection Biology, this system contains four interconnected databases: i.) 2D-PAGE Database: Two dimensional electrophoresis (2-DE) and mass spectrometry of diverse microorganisms and other organisms. This database currently contains 4971 identified spots and 1228 mass peaklists in 44 reference maps representing experiments from 24 different organisms and strains. The data were submitted by 84 Submitters from 24 Institutes and 12 nations. It also contains various software tools that are important in formatting and analyzing gels and mass peaks; software include: *TopSpot: Scanning the gel, editing the spots and saving the information *Fragmentation: Fragmentation of the gel image into sections *MS-Screener: Perl script to compare the similarity of MALDI-PMF peaklists *MS-Screener update: MS-Screener can be used to compare mass spectra (MALDI-MS(/MS) as well as ESI-MS/MS spectra) on the basis of their peak lists (.dta, .pkm, .pkt, or .txt files), to recalibrate mass spectra, to determine and eliminate exogenous contaminant peaks, and to create matrices for cluster analyses. *GelCali: Online calibration of the Mr- and pI-axis of 2-DE gels with mathematical regression methods ii.)Isotope Coded Affinity Tag (ICAT)-LC/MS database: Isotope Coded Affinity Tag (ICAT)-LC/MS data for Mycobacterium tuberculosis strain BCG versus H37Rv. iii.) FUNC_CLASS database: Functional classification of diverse microorganism. This database also integrates genomic, proteomic, and metabolic data. iv.) DIFF database: Presentation of differently regulated proteins obtained by comparative proteomic experiments using computerized gel image analysis. microbial research, electrophoresis, mass spectrometry, mycobacterium tuberculosis, protein regulation has parent organization: Max Planck Institute for Infection Biology; Berlin; Germany BMBF 031U107A;
European Union QLRT-1999-31536;
European Union QLK2-CT-2001-02018
nif-0000-02523 SCR_001678 2025-04-09 11:47:34 5
Virtual Health Library
 
Resource Report
Resource Website
1+ mentions
Virtual Health Library (RRID:SCR_001676) topical portal, portal, data or information resource VHL is a library, a decentralized and dynamic information-source collection, designed to provide equitable access to scientific knowledge on health. This collection operates as an Internet network of products and services, structured to progressively meet the need for information on health on the part of authorities, administrators, researchers, professors, students, professionals, the media and the general public. It sets itself apart from other information sources available on the Internet due to its selection criteria and quality control. The Virtual Health Library is envisioned as the broad of scientific and technical knowledge based in health-entered, organized, and stored in electronic format in the countries of the Region, universally accessible on the Internet and compatible with international databases. The VHL is a common space shared by information users, producers and intermediaries. It is based on the information paradigm set by the Internet, where users may interact with networks of information sources and with other users. The most important consequence of this paradigm is the convergence of functions and activities of production, intermediation and use of information sources. It will also be possible to enrich, schedule, reformulate, and/or translate the basic information sources into new information products and services, with value added, in order to meet more efficiently the information needs of users from specific communities. BIREME has established a plan of action to implement the Virtual Health Library based on 5 lines of action: promotion and marketing; realignment of traditional products and services; production of electronic publications; development of tools for integrating and locating information; and development of other Virtual Health Library components. Sponsors: VHL is supported by the Latin-American and Caribbean Center on Health Sciences Information. collection, database, health, information, internet, knowledge, library, product, professional, professor, researcher, scientific, service, student, virtual nif-0000-10164 http://www.who.int/library/databases/paho/en/ SCR_001676 VHL 2025-04-09 11:47:34 1
Ribosomal Mutation Database
 
Resource Report
Resource Website
1+ mentions
Ribosomal Mutation Database (RRID:SCR_001677) Ribosomal Mutation Database storage service resource, data or information resource, service resource, database, data repository This is a database of 16S and 23S ribosomal RNA mutations reported in literature, expanded to include mutations in ribosomal proteins and ribosomal factors. Access to the expanded versions of the 16S and 23S Ribosomal RNA Mutation Databases has been improved to permit searches of the lists of alterations for all the data from (1) one specific organism, (2) one specific nucleotide position, (3) one specific phenotype, or (4) a particular author. Please send bibliographic citations for published work to be included in The Ribosomal Mutation Database to the curator via email. The database currently consists of 1024 records, including 485 16S rRNA records from Escherichia coli, 37 16S-like rRNA records from other organisms, 421 23S rRNA records from E. coli, and 81 23S-like records from other organisms. The numbering of positions in all records corresponds to the numbering in E. coli. We welcome any suggested revisions to the database, as well as information about newly characterized 16S or 23S rRNA mutations. The expanded database will be renamed to The Ribosomal Mutation Database and will include mutations in ribosomal proteins and ribosomal factors. escherichia coli, mutation, nucleotide, phenotype, ribosomal factor, ribosomal protein, ribosomal rna, rna, rna sequence, rrna, rrna 16s, rrna 23s has parent organization: Franklin and Marshall College; Pennsylvania; USA NSF MCB-9726951 PMID:8594571
PMID:8594570
nif-0000-02522 SCR_001677 The Ribosomal Mutation Database 2025-04-09 11:47:34 2
Duke University Medical Center: Duke Image Analysis Laboratory
 
Resource Report
Resource Website
10+ mentions
Duke University Medical Center: Duke Image Analysis Laboratory (RRID:SCR_001716) topical portal, portal, data or information resource, database THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. The Duke Image Analysis Laboratory (DIAL) is committed to providing comprehensive imaging support in research studies and clinical trials to various agencies. The capabilities of the lab include protocol development, site training and certification, and image archival and analysis for a variety of modalities including magnetic resonance imaging, magnetic resonance spectroscopy, computed tomography and nuclear medicine. DIAL uses the latest technologies to analyze Magnetic Resonance Imaging (MRI) data sets of the brain. Currently the lab is engaged in measurement of the hippocampus, amygdala, caudate, ventricular system, and other brain regional volumes. Each of these techniques have undergone a rigorous validation process. The measurements of brain structures provide a useful means of non-invasively testing for changes in the brain of the patient. Changes over time in the brain can be detected, and evaluated with respect to the treatment that the patient is receiving. Magnetic Resonance Spectroscopy (MRS) allows DIAL to obtain an accurate profile of the chemical content of the brain. This sensitive technique can detect small changes in the metabolic state of the brain; changes that vary in response to administration of therapeutic agents. The ability to detect these subtle shifts in brain chemistry allows DIAL to identify changes in the brain with more sensitivity than allowed by image analysis. In this respect, NMR spectroscopy can provide early detection of changes in the brain, and serves to compliment the data obtained from image analysis. Additionally, DIAL also contains SQUID (Scalable Query Utility and Image Database). It is an image management system developed to facilitate image management in research and clinical trials: SQUID offers secure, redundant image storage and organizational functions for sorting and searching digital images for a variety of modalities including MRI, MRS, CAT Scan, X-Ray and Nuclear Medicine. SQUID can access images directly from DUMC scanners. Data can also be loaded via DICOM CDs academic, amygdala, analysis, biotechnology, brain, cat scan, caudate, chemical, clinical, computed, development, digital, hippocampus, imaging, lab, laboratory, magnetic resonance imaging, magnetic resonance spectroscopy, medical, medicine, metabolic, mri, mrs, nmr, nuclear, nuclear medicine, pharmaceutical, research, spectroscopy, structure, technology, therapeutic, tomography, treatment, trial, ventricular, ventricular system, volume, x-ray, FASEB list has parent organization: Duke University; North Carolina; USA THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-10213 SCR_001716 DMC DIAL 2025-04-09 11:47:38 33
King's College London; London; United Kingdom
 
Resource Report
Resource Website
King's College London; London; United Kingdom (RRID:SCR_001744) KCL university Public research university located in London, United Kingdom that offers undergraduate, graduate, and professional degree programs in medicine, economics, social sciences, etc. public, research, london, medical school, undergraduate, graduate uses: ReadCube
is related to: AddNeuroMed
is related to: EU-AIMS
is related to: NEWMEDS
is related to: ONE Study
is related to: EMIF
is parent organization of: Pliny
is parent organization of: TRANSFoRm
is parent organization of: Kings College London Infectious Diseases BioBank
is parent organization of: Major depressive disorder neuroimaging database
is parent organization of: Bipolar Disorder Neuroimaging Database
is parent organization of: Marker And Gene Interpolation and Correlation
is parent organization of: Brain Segmentation Testing Protocol
is parent organization of: MSbind
is parent organization of: Pharmacological Imaging and Pattern Recognition toolbox
is parent organization of: Neuromuscular disease outcome measures
is parent organization of: Haemophilia B Mutation Database
is parent organization of: Brain and Body Genetic Resource Exchange
is parent organization of: LIGand Attachment SITE Database
is parent organization of: Rodent Brain Extraction Tool
is parent organization of: AddNeuroMed
is parent organization of: NEWMEDS
is parent organization of: MRC London Neurodegenerative Diseases Brain Bank
is parent organization of: Kings College London Microscopy Innovation Centre Core Facility
grid.13097.3c, nlx_60659, Crossref funder ID:100009360, ISNI:0000 0001 2322 6764, Wikidata:Q245247 https://ror.org/0220mzb33 SCR_001744 King's College 2025-04-09 11:47:41 0
Internet Atlas of Histology
 
Resource Report
Resource Website
Internet Atlas of Histology (RRID:SCR_001745) training material, narrative resource, data or information resource, curriculum material, slide, topical portal, portal This portal leads to the Internet Atlas of Histology. This atlas allows you to explore the complete set of histological specimens that features many excellent plastic sections prepared by Aulikki Kokko-Cunningham, M.D. Also called University of Illnois at Urbana-Champaign, the College of Medicine: Internet Atlas of Histology Over 1000 labeled histological features are labeled and have accompanying functional descriptions. All of this information is accessible though an alphabetical index and a search engine. This resource has images categorized in: - Slides: Links to all of the specimens - Objects:Index of histological features Sponsors: This resource is supported by UIUC. electron micrograph, electron microscopy, endocrine, epithelium, female reproductive system, blood, bone, bone marrow, cell, circulatory system, connective tissue, cross section, digestive tract, histology, immune system, light microscopy, male reproductive system, muscle, nervous system, object, respiratory system, scanning electron microscopy (sem), sense organ, skin, specimen, tissue, transmission electron microscopy (tem), urinary system, image has parent organization: University of Illinois at Urbana-Champaign; Illinois; USA nif-0000-10251 SCR_001745 UICU Histology Atlas 2025-04-09 11:47:41 0
Animal QTLdb
 
Resource Report
Resource Website
10+ mentions
Animal QTLdb (RRID:SCR_001748) Animal QTLdb storage service resource, data or information resource, service resource, database, data repository Database of trait mapping data, i.e. QTL (phenotype / expression, eQTL), candidate gene and association data (GWAS) and copy number variations (CNV) mapped to livestock animal genomes, to facilitate locating and comparing discoveries within and between species. New data and database tools are continually developed to align various trait mapping data to map-based genome features, such as annotated genes. QTLdb is open to house QTL/association date from other animal species where feasible. Most scientific journals require that any original QTL/association data be deposited into public databases before paper may be accepted for publication. User curator accounts are provided for direct data deposit. Users can download QTLdb data from each species or individual chromosome. chromosome, comparative genomics, dna sequence, genome, livestock, quantitative trait locus, non-human animal, structural genomics, single-nucleotide polymorphism, gene association, genomics, trait, copy number variation, trait, phenotype, expression, eqtl, genome wide association study, candidate gene, genotype uses: Entrez Gene
uses: Ensembl
is used by: NIF Data Federation
is used by: MONARCH Initiative
is listed by: re3data.org
is related to: Ensembl Variation
is related to: Vertebrate Trait Ontology
has parent organization: Iowa State University; Iowa; USA
has parent organization: NAGRP Bioinformatics Coordination Program
USDA NRSP-8;
USDA 2007-04187
PMID:23180796
PMID:17245610
Free, Freely available nif-0000-02550 http://www.animalgenome.org/QTLdb/ SCR_001748 Animal QTL database, Animal Quantitative Trait Loci database, AnimalQTLdb, Animal Quantitative Trait Loci (QTL) database 2025-04-09 11:47:41 48
George Mason University: Krasnow Institute for Advanced Study
 
Resource Report
Resource Website
George Mason University: Krasnow Institute for Advanced Study (RRID:SCR_001741) data or information resource, training resource, postdoctoral program resource, portal, organization portal The Krasnow Institute seeks to expand understanding of mind, brain, and intelligence by conducting research at the intersection of the separate fields of cognitive psychology, neurobiology, and the computer-driven study of artificial intelligence and complex adaptive systems. These separate disciplines increasingly overlap and promise progressively deeper insight into human thought processes. The Institute also examines how new insights from cognitive science research can be applied for human benefit in the areas of mental health, neurological disease, education, and computer design. It is this informed access to mind and brain that is the core of the mission of The Krasnow Institute. While their goals and tools are scientific, they also are fully cognizant of the applications of the results for the benefit of mankind, in areas like mental health, neurological diseases, and computer design. In asking the major questions they realized the necessity of being flexible, innovative, and trans-disciplinary. Therefore, they became dedicated to bringing together scholars from a wide variety of specialties and providing a milieu where they can be both productive and interactive. This institute will provide these researchers with the tools required to move ahead and create an environment of optimal scientific integrity coupling innovation with risk taking. The Krasnow institute is especially attuned to the deep insights from evolutionary biology, which is at the root of understanding all organismic functions including cognition; computer studies of complex systems, which present a revolution in our ability to deal with the world of interactive agents; and a long history of cognitive psychology, which provides a huge data base of human abilities and responses. It also continues to develop its long-term research program based on the contributions of George Mason University faculty holding joint appointments at Krasnow and other GMU academic departments. Additionally, the Krasnow Institute Department of Molecular Neuroscience, together with the College of Science (COS) and the College of Humanities and Social Sciences (CHSS), oversees the campus-wide Neuroscience Council in developing the Neuroscience PhD curriculum. Research groups in the Krasnow institute include: - Adaptive Systems Laboratory - Center for Neural Dynamics - Center for Social Complexity - Center for the Study of Neuroeconomics o Neuroeconomics Laboratory - Comparative Vertebrate Neurobiology Research Group - Center for Neuroinformatics, Neural Structures, and Neuroplasticity (CN3) o Computational and Experimental Neuroplasticity (CENlab) o Computational Neuroanatomy Group o Physiological and Behavioral Neuroscience in Juveniles (PBNJ) Lab - Receptor Complexes and Signaling Lab - Krasnow Investigations of Developmental Learning and Behavior (KIDLAB) - Neuro Imaging Core of the Krasnow Institute dynamics, education, emotion, evolutionary, function, adaptive, artificial, behavior, behavioral, biology, biomedical, brain, cognition, cognitive, cognitive science, complex, computational, computer, design, disease, happiness, homo sapiens, human, imaging, intelligence, learning, mental health, mind, nature, neural, neuroanatomy, neurobiology, neuroeconomics, neuroinformatics, neurological, neuroplasticity, organismic, physiological, psychology, receptor, research, signaling, social, structure, system, theological, thought, vertebrate has parent organization: George Mason University; Virginia; USA
is parent organization of: BraVa
is parent organization of: Computational Neuroanatomy Group
nif-0000-10239 SCR_001741 GMU Kransnow 2025-04-09 11:47:41 0
RNASeqBias
 
Resource Report
Resource Website
RNASeqBias (RRID:SCR_001739) RNASeqBias software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 10th,2023. An R software package for detecting and correcting biases in RNA-Sequencing data. rna-seq is listed by: OMICtools
has parent organization: Yale School of Medicine; Connecticut; USA
THIS RESOURCE IS NO LONGER IN SERVICE. OMICS_01957 SCR_001739 2025-04-09 11:47:41 0
pairedBayes
 
Resource Report
Resource Website
1+ mentions
pairedBayes (RRID:SCR_001738) pairedBayes software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 10th,2023. An R code for Bayesian modeling of paired RNA-seq experiments. r, rna-seq is listed by: OMICtools
has parent organization: Yale School of Medicine; Connecticut; USA
THIS RESOURCE IS NO LONGER IN SERVICE. OMICS_01958 SCR_001738 2025-04-09 11:47:40 1
Sea Urchin Genome Project
 
Resource Report
Resource Website
1+ mentions
Sea Urchin Genome Project (RRID:SCR_001735) project portal, portal, data or information resource Provides informationa about Genome of California Purple Sea Urchin, one species (Strongylocentrotus purpuratus) of which has been sequenced and annotated by Sea Urchin Genome Sequencing Consortium led by HGSC. Reports sequence and analysis of genome of sea urchin Strongylocentrotus purpuratus, a model for developmental and systems biology. echinoderm, evolutionary, fragile urchin, gene, genome, allocentrotus fragilis, bacterial artificial chromosome (bac), biology, chromosome, clone, core facility, deuterostome, developmental biology, heterozygosity, metabase, model, sea urchin, sequence, shotgun, strongylocentrotus franciscanus, strongylocentrotus purpuratus, systems biology, vertebrate has parent organization: Baylor University; Texas; USA nif-0000-25606, SCR_002841, nif-0000-10253 http://www.hgsc.bcm.tmc.edu/project-species-o-Strongylocentrotus%20purpuratus.hgsc?pageLocation=Strongylocentrotus%20purpuratus SCR_001735 Sea Urchin, HGSC Sea Urchin Genome Project 2025-04-09 11:47:40 1
Melvin Yahr International Parkinson's Disease Foundation
 
Resource Report
Resource Website
Melvin Yahr International Parkinson's Disease Foundation (RRID:SCR_001652) MYIPDF funding resource THIS RESOURCE IS NO LONGER IN SERVICE, documented on March 28, 2017. Foundation that helps junior physicians and neuroscientists continue their research on Parkinson's Disease and related disorders, with financial support for professional and intellectual development. It promotes an international community of researchers, focusing on the young enthusiastic investigators and clinicians who might otherwise be forced to abandon their ideas and efforts. Parkinson's disease THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-11666 http://www.myipdf.org SCR_001652 Melvin Yahr International Parkinson's Disease Foundation, Melvin Yahr Foundation, The Melvin Yahr International Parkinson's Disease Foundation 2025-04-09 11:47:32 0
DNACLUST
 
Resource Report
Resource Website
1+ mentions
DNACLUST (RRID:SCR_001771) software resource Software program for clustering large number of short similar DNA sequences. It was originally designed for clustering targeted 16S rRNA pyrosequencing reads. cluster, dna sequence, gene, 16s rrna pyrosequencing read, microbiome is listed by: OMICtools
is listed by: Human Microbiome Project
is listed by: Debian
has parent organization: SourceForge
PMID:21718538
DOI:10.1186/1471-2105-12-271
Free OMICS_01955 https://sources.debian.org/src/dnaclust/ SCR_001771 DNAClust 2025-04-09 11:47:44 8

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. RRID Portal Resources

    Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.