Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
YHap Resource Report Resource Website 1+ mentions |
YHap (RRID:SCR_007951) | YHap | software resource | Software for identifying haplogroups from low coverage sequence data. |
is listed by: OMICtools has parent organization: Imperial College London; London; United Kingdom |
PMID:24252171 | OMICS_00304 | SCR_007951 | 2026-09-19 12:51:33 | 2 | |||||||||
|
AmpliconNoise Resource Report Resource Website 50+ mentions |
AmpliconNoise (RRID:SCR_007814) | AmpliconNoise | software resource | A collection of programs for the removal of noise from 454 sequenced PCR amplicons. This project also includes the Perseus algorithm for chimera removal. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Google Code |
DOI:10.1186/1471-2105-12-38 | biotools:pyronoise, OMICS_01112 | https://bio.tools/pyronoise, https://sources.debian.org/src/anfo/ | SCR_007814 | 2026-09-19 12:51:32 | 91 | |||||||
|
polyaPeak Resource Report Resource Website 1+ mentions |
polyaPeak (RRID:SCR_007687) | polyaPeak | software resource | An R package for ranking ChIP-seq peaks with shape information. |
is listed by: OMICtools has parent organization: Emory University; Georgia; USA |
OMICS_00456 | SCR_007687 | 2026-09-19 12:51:32 | 2 | ||||||||||
|
Variant Effect Predictor Resource Report Resource Website 1000+ mentions |
Variant Effect Predictor (RRID:SCR_007931) | VEP | analysis service resource, data analysis service, production service resource, service resource, software resource | Data analysis service to predict the functional consequences of known and unknown variants. | perl, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Ensembl |
biotools:ensembl_variant_effect_predictor | https://bio.tools/ensembl_variant_effect_predictor | SCR_007931 | Ve!P | 2026-09-19 12:51:33 | 2073 | |||||||
|
Anno-J Resource Report Resource Website 1+ mentions |
Anno-J (RRID:SCR_008192) | Anno-J | data access protocol, software resource, source code, web service | A REST-based web application designed for visualizing deep sequencing data and other genome annotation data. | is listed by: OMICtools | Creative Commons Attribution-NonCommercial-ShareAlike License, v3 | OMICS_00901 | SCR_008192 | 2026-09-19 12:51:36 | 9 | |||||||||
|
DADA Resource Report Resource Website 10+ mentions |
DADA (RRID:SCR_008205) | DADA | software resource | Infers both the sample genotypes and error parameters that produced a metagenome data set. | is listed by: OMICtools | PMID:23113967 | OMICS_01117 | SCR_008205 | Divisive Amplicon Denoising Algorithm | 2026-09-19 12:51:36 | 46 | ||||||||
|
MMSEQ Resource Report Resource Website 50+ mentions |
MMSEQ (RRID:SCR_008184) | MMSEQ | software resource | Software package that contains a collection of statistical tools for analysing RNA-seq expression data. | is listed by: OMICtools | PMID:24281695 | OMICS_01280 | SCR_008184 | 2026-09-19 12:51:36 | 66 | |||||||||
|
Seven Bridges Genomics Resource Report Resource Website 1+ mentions |
Seven Bridges Genomics (RRID:SCR_008308) | Seven Bridges | service resource | A cloud platform for next-generation sequencing analysis. | next generation sequencing, cloud computing | is listed by: OMICtools | OMICS_01222 | SCR_008308 | 2026-09-19 12:51:37 | 4 | |||||||||
|
ChroMoS Resource Report Resource Website 1+ mentions |
ChroMoS (RRID:SCR_008320) | ChroMoS | software resource | Combines genetic and epigenetic data to facilitate SNP classification, prioritization and prediction of their functional effect. | Chromatin, modified SNPs, SNPs, genetic and epigenetic data combination | is listed by: OMICtools | PMID:23782616 | Free, Freely available | OMICS_00145 | SCR_008320 | Chromatin Modified SNPs | 2026-09-19 12:51:38 | 5 | ||||||
|
VAMP Resource Report Resource Website 50+ mentions |
VAMP (RRID:SCR_008527) | VAMP | software resource | Software for visualization and Analysis of CGH arrays, transcriptome and other Molecular Profiles. |
is listed by: OMICtools has parent organization: Curie Institute; Paris; France |
PMID:16820431 | OMICS_00738 | SCR_008527 | VAMP: Visualization and Analysis of CGH arrays transcriptome and other Molecular Profiles, Visualization and Analysis of array-CGH transcriptome and other Molecular Profiles | 2026-09-19 12:51:41 | 71 | ||||||||
|
DEGseq Resource Report Resource Website 1000+ mentions |
DEGseq (RRID:SCR_008480) | DEGseq | software resource | R package to identify differentially expressed genes from RNA-Seq data. |
is listed by: OMICtools has parent organization: Bioconductor |
OMICS_01305 | SCR_008480 | 2026-09-19 12:51:40 | 1729 | ||||||||||
|
EMBOSS Resource Report Resource Website 1000+ mentions |
EMBOSS (RRID:SCR_008493) | EMBOSS | data analysis software, data processing software, sequence analysis software, software application, software resource, software toolkit | Software analysis package for molecular biology community. Automatically copes with data in variety of formats and allows transparent retrieval of sequence data from web. Libraries are provided with package. Provides toolkit for creating bioinformatics applications or workflows. Provides set of sequence analysis programs. Provided programs cover areas such as sequence alignment, rapid database searching with sequence patterns, protein motif identification, nucleotide sequence pattern analysis, codon usage analysis for small genomes, rapid identification of sequence patterns in large scale sequence sets, and presentation tools for publication. | FASEB list |
is listed by: Debian is listed by: OMICtools is listed by: SoftCite is related to: BioExtract is related to: pepwheel |
DOI:10.1016/S0168-9525(00)02024-2 | Free, Freely available | OMICS_21165, nif-0000-30488 | https://sources.debian.org/src/emboss/ | http://www.emboss.org | SCR_008493 | The European Molecular Biology Open Software Suite, European Molecular Biology Open Software Suite | 2026-09-19 12:51:40 | 4742 | ||||
|
World Health Organization Resource Report Resource Website 1000+ mentions |
World Health Organization (RRID:SCR_008505) | WHO | nonprofit organization | The directing and coordinating authority responsible for public health within the United Nations system. The WHO Regional Office for Europe (WHO/Europe) is one of the six regional offices around the world. It serves the WHO European Region, which comprises 53 countries from the Atlantic to the Pacific oceans. WHO/Europe collaborates with a range of public health stakeholders in the Region and globally, to ensure that coordinated action is taken to develop and implement efficient health policies and to strengthen health systems. WHO/Europe is made up of public health, scientific, and technical experts. |
is listed by: OMICtools is parent organization of: World Health Organization: The Global Health Library is parent organization of: WHO International Clinical Trials Registry Platform is parent organization of: International Agency for Research on Cancer is parent organization of: World Health Organization Statistical Information System is parent organization of: WHO Adverse Reaction Terminology is parent organization of: WHO World Health Mental Health Surveys |
Wikidata: Q7817, grid.3575.4, ISNI: 121633745, nif-0000-30534, Crossref funder ID: 100004423 | https://ror.org/01f80g185 | SCR_008505 | 2026-09-19 12:51:41 | 3572 | |||||||||
|
tRNAscan-SE Resource Report Resource Website 1000+ mentions |
tRNAscan-SE (RRID:SCR_008637) | analysis service resource, data analysis service, production service resource, service resource, software resource, web application | Web server to search for tRNA genes in genomic sequence. If you would like to run tRNAscan-SE locally, you can get the UNIX source code (gzip''d tar file). | bio.tools, tRNA genes, genomic sequence |
is listed by: bio.tools is listed by: Debian is listed by: OMICtools has parent organization: University of California at Santa Cruz; California; USA |
PMID:15980563 PMID:9023104 DOI:10.1093/nar/25.5.0955 |
Free, Freely available | SCR_010835, OMICS_00385, nif-0000-32031, biotools:trnascan-se | https://bio.tools/trnascan-se, https://sources.debian.org/src/trnascan-se/ | SCR_008637 | Lowe Lab tRNAscan-SE | 2026-09-19 12:51:43 | 2855 | ||||||
|
DMI Resource Report Resource Website |
DMI (RRID:SCR_008599) | DMI | software resource | Computational tool developed to help identify cancer-associated ''driver'' mutations from ''passenger'' ones in a cancer genome. | is listed by: OMICtools | Cancer | OMICS_00148 | SCR_008599 | Driver Mutation Identification | 2026-09-19 12:51:42 | 0 | ||||||||
|
Ingenuity Pathway Analysis Resource Report Resource Website 5000+ mentions Rating or validation data |
Ingenuity Pathway Analysis (RRID:SCR_008653) | IPA | pathway analysis tool | A web-based software application that enables users to analyze, integrate, and understand data derived from gene expression, microRNA, and SNP microarrays, metabolomics, proteomics, and RNA-Seq experiments, and small-scale experiments that generate gene and chemical lists. Users can search for targeted information on genes, proteins, chemicals, and drugs, and build interactive models of experimental systems. IPA allows exploration of molecular, chemical, gene, protein and miRNA interactions, creation of custom molecular pathways, and the ability to view and modify metabolic, signaling, and toxicological canonical pathways. In addition to the networks and pathways that can be created, IPA can provide multiple layering of additional information, such as drugs, disease genes, expression data, cellular functions and processes, or a researchers own genes or chemicals of interest. | software, drug, gene, analysis, chemical, metabolic, model, pathway, protein, signal, molecular signaling, genomic, pathway analysis tool |
uses: Ingenuity Pathways Knowledge Base is listed by: Biositemaps is listed by: OMICtools is listed by: SoftCite |
Commercial license | nif-0000-33144, OMICS_00399 | http://www.ingenuity.com/products/ipa, http://www.ingenuity.com/products/ipa/microrna-research | SCR_008653 | QIAGEN Ingenuity Pathway Analysis | 2026-09-19 12:51:43 | 6828 | ||||||
|
Tute Genomics Resource Report Resource Website |
Tute Genomics (RRID:SCR_008672) | Tute Genomics | service resource | A robust, secure, medical-grade, web application that lives in the cloud and has the ability to analyze and annotate entire human genomes in a rapid and cost-effective way. | genome, cloud computing | is listed by: OMICtools | OMICS_01223 | SCR_008672 | 2026-09-19 12:51:43 | 0 | |||||||||
|
eXtasy Resource Report Resource Website 1+ mentions |
eXtasy (RRID:SCR_008671) | eXtasy | software resource | A pipeline for ranking nonsynonymous single nucleotide variants given a specific phenotype. | is listed by: OMICtools | OMICS_00150 | SCR_008671 | 2026-09-19 12:51:43 | 4 | ||||||||||
|
Condel Resource Report Resource Website 100+ mentions |
Condel (RRID:SCR_008584) | Condel | software resource | A method to assess the outcome of nonsynonymous SNVs using a consensus deleteriousness score that combines various tools (e.g. SIFT, Polyphen2, MutationAssessor). | is listed by: OMICtools | OMICS_00146 | SCR_008584 | CONsensus DELeteriousness score of missense SNVs | 2026-09-19 12:51:42 | 222 | |||||||||
|
DWD Resource Report Resource Website |
DWD (RRID:SCR_008760) | DWD | software resource | This software package provides the implementation of distance weighted discrimination (DWD) using an interior point method for the solution of second order cone programming problems. | is listed by: OMICtools | OMICS_00858 | SCR_008760 | 2026-09-19 12:51:45 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
